Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030808 Camellia sinensis var. sinensis HOM05D001808 ORTHO05D033866 4.3e-22 107.1 53 100.0
CSS0012815 Camellia sinensis var. sinensis HOM05D001808 ORTHO05D033866 1.2e-19 99.0 53 92.5
CSS0027408 Camellia sinensis var. sinensis HOM05D053810 ORTHO05D033866 1.1e-17 92.4 50 88.0
FAN08G3030 Fragaria x ananassa HOM05D001808 ORTHO05D001747 2.0e-11 71.6 48 70.8
Dinv09798 Davidia involucrata HOM05D001808 ORTHO05D001747 2.6e-11 71.2 48 68.8
RcHm_v2.0_Chr7g0185361 Rosa chinensis HOM05D001808 ORTHO05D001747 7.6e-11 69.7 48 70.8
FAN04G0848 Fragaria x ananassa HOM05D001808 ORTHO05D001747 9.9e-11 69.3 48 68.8
FvH4_5g12220 Fragaria vesca HOM05D001808 ORTHO05D001747 2.2e-10 68.2 48 66.7
CiPaw.15G130100 Carya illinoinensis HOM05D001808 ORTHO05D001747 2.9e-10 67.8 48 66.7
Duzib084G0243 Durio zibethinus HOM05D001808 ORTHO05D001747 4.9e-10 67.0 48 64.6
MD06G1215700 Malus domestica HOM05D001808 ORTHO05D001747 6.4e-10 66.6 48 66.7
FAN18G2764 Fragaria x ananassa HOM05D001808 ORTHO05D001747 1.1e-09 65.9 48 64.6
QL10p025230 Quercus lobata HOM05D001808 ORTHO05D001747 1.9e-09 65.1 48 64.6
TAR622G1100 Trochodendron aralioides HOM05D001808 ORTHO05D001747 1.9e-09 65.1 48 60.4
Lj5P148T18 Lonicera japonica HOM05D001808 ORTHO05D001747 3.2e-09 64.3 48 60.4
Prupe.5G220900 Prunus persica HOM05D001808 ORTHO05D001747 3.2e-09 64.3 48 64.6
Atru.chr9.836 Acer truncatum HOM05D001808 ORTHO05D001747 4.2e-09 63.9 48 60.4
Nn3g17827 Nelumbo nucifera HOM05D001808 ORTHO05D001747 7.1e-09 63.2 48 60.4
Manes.05G137700 Manihot esculenta HOM05D001808 ORTHO05D001747 9.3e-09 62.8 48 64.6
Thecc.03G034500 Theobroma cacao HOM05D001808 ORTHO05D001747 9.3e-09 62.8 48 66.7
arahy.Tifrunner.gnm1.ann1.FZ18G1 Arachis hypogaea HOM05D001808 ORTHO05D001747 1.6e-08 62.0 48 62.5
arahy.Tifrunner.gnm1.ann1.ZH37XF Arachis hypogaea HOM05D001808 ORTHO05D001747 1.6e-08 62.0 48 60.4
COL.COLO4_05973 Corchorus olitorius HOM05D001808 ORTHO05D001747 1.6e-08 62.0 48 60.4
GSVIVG01008279001 Vitis vinifera HOM05D001808 ORTHO05D001747 2.1e-08 61.6 48 60.4
Glyma.08G041000 Glycine max HOM05D001808 ORTHO05D001747 2.7e-08 61.2 48 60.4
Lj4g0019706 Lotus japonicus HOM05D001808 ORTHO05D001747 7.9e-08 59.7 48 54.2
Phvul.002G316000 Phaseolus vulgaris HOM05D001808 ORTHO05D001747 7.9e-08 59.7 48 58.3
Nitab4.5_0000974g0040 Nicotiana tabacum HOM05D001808 ORTHO05D001747 2.3e-07 58.2 48 54.2
Lalb_Chr05g0222531 Lupinus albus HOM05D001808 ORTHO05D001747 5.1e-07 57.0 46 56.5
Nitab4.5_0009734g0020 Nicotiana tabacum HOM05D001808 ORTHO05D001747 6.7e-07 56.6 48 52.1
Solyc03g119550.3 Solanum lycopersicum HOM05D001808 ORTHO05D001747 6.7e-07 56.6 48 50.0
Sopen03g038380 Solanum pennellii HOM05D001808 ORTHO05D001747 6.7e-07 56.6 48 50.0
VMungo0251G3693 Vigna mungo HOM05D001808 ORTHO05D001747 8.7e-07 56.2 48 52.1
CAN.G438.136 Capsicum annuum HOM05D001808 ORTHO05D001747 1.9e-06 55.1 46 52.2
Peaxi162Scf00015g00937 Petunia axillaris HOM05D001808 ORTHO05D001747 2.5e-06 54.7 48 50.0
TWI81G1032 Tripterygium wilfordii HOM05D001808 ORTHO05D001747 3.3e-06 54.3 48 50.0
ATR0686G175 Amborella trichopoda HOM05D001808 ORTHO05D001747 5.6e-06 53.5 48 52.1
PGSC0003DMG400005632 Solanum tuberosum HOM05D001808 ORTHO05D001747 5.6e-06 53.5 48 47.9
ATR0684G128 Amborella trichopoda HOM05D001808 ORTHO05D001747 9.6e-06 52.8 48 47.9
Cpa.g.sc3.517 Carica papaya HOM05D001808 ORTHO05D001747 9.6e-06 52.8 47 53.2
MBI16_g05928_MAGBIO Magnolia biondii HOM05D001808 ORTHO05D001747 9.6e-06 52.8 48 54.2


User provided reference genes

Program Settings