Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 4.2e-30 134.0 68 100.0
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.6e-29 131.0 68 97.1
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.0e-28 129.4 68 95.6
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.4e-27 124.0 65 96.9
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 9.7e-27 122.9 65 95.4
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.1e-25 119.4 80 81.2
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 2.2e-23 111.7 65 84.6
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 5.0e-23 110.5 65 83.1
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 6.5e-23 110.2 65 84.6
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 8.5e-23 109.8 65 83.1
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 8.5e-23 109.8 65 84.6
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 8.5e-23 109.8 65 83.1
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.1e-22 109.4 65 83.1
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 1.1e-22 109.4 65 83.1
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.1e-22 109.4 65 83.1
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.1e-22 109.4 65 83.1
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.5e-22 109.0 65 81.5
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.5e-22 109.0 65 84.6
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 1.9e-22 108.6 65 83.1
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 1.9e-22 108.6 65 81.5
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.5e-22 108.2 65 83.1
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.5e-22 108.2 65 81.5
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 2.5e-22 108.2 63 82.5
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 2.5e-22 108.2 65 80.0
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 2.5e-22 108.2 65 80.0
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 2.5e-22 108.2 65 81.5
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.2e-22 107.8 65 81.5
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 3.2e-22 107.8 65 81.5
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 3.2e-22 107.8 65 83.1
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.2e-22 107.8 65 81.5
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 4.2e-22 107.5 65 80.0
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 4.2e-22 107.5 65 78.5
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 4.2e-22 107.5 65 78.5
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 4.2e-22 107.5 65 81.5
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 4.2e-22 107.5 65 81.5
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 4.2e-22 107.5 65 81.5
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 4.2e-22 107.5 65 80.0
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 4.2e-22 107.5 64 81.2
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 4.2e-22 107.5 64 81.2
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 4.2e-22 107.5 64 81.2
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 4.2e-22 107.5 64 82.8
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 5.5e-22 107.1 65 80.0
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 5.5e-22 107.1 65 80.0
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 5.5e-22 107.1 64 79.7
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 5.5e-22 107.1 65 80.0
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 5.5e-22 107.1 64 81.2
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 5.5e-22 107.1 64 82.8
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 7.2e-22 106.7 65 78.5
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 7.2e-22 106.7 65 78.5
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 7.2e-22 106.7 65 80.0
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 7.2e-22 106.7 65 80.0
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 7.2e-22 106.7 65 80.0
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 9.4e-22 106.3 65 81.5
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 9.4e-22 106.3 65 80.0
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 9.4e-22 106.3 65 81.5
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 9.4e-22 106.3 65 76.9
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.2e-21 105.9 65 78.5
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 1.2e-21 105.9 65 78.5
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.2e-21 105.9 65 78.5
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 1.2e-21 105.9 65 80.0
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.2e-21 105.9 65 78.5
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 1.2e-21 105.9 65 80.0
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 1.2e-21 105.9 65 80.0
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.2e-21 105.9 65 76.9
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.6e-21 105.5 65 80.0
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.6e-21 105.5 65 80.0
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.6e-21 105.5 65 78.5
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.6e-21 105.5 65 76.9
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 1.6e-21 105.5 65 80.0
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 1.6e-21 105.5 65 78.5
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 1.6e-21 105.5 65 78.5
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.6e-21 105.5 65 78.5
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.1e-21 105.1 65 81.5
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 2.1e-21 105.1 65 78.5
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 2.1e-21 105.1 65 81.5
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 2.7e-21 104.8 65 76.9
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 2.7e-21 104.8 65 76.9
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.7e-21 104.8 65 80.0
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 2.7e-21 104.8 65 80.0
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 2.7e-21 104.8 64 79.7
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 2.7e-21 104.8 65 73.8
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 2.7e-21 104.8 64 79.7
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 3.6e-21 104.4 65 76.9
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 3.6e-21 104.4 64 79.7
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 3.6e-21 104.4 64 78.1
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 4.7e-21 104.0 65 76.9
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 4.7e-21 104.0 65 80.0
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 6.1e-21 103.6 65 76.9
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 8.0e-21 103.2 65 75.4
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 8.0e-21 103.2 64 78.1
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 8.0e-21 103.2 65 78.5
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 8.0e-21 103.2 65 78.5
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 8.0e-21 103.2 65 80.0
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 1.0e-20 102.8 65 78.5
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 1.0e-20 102.8 65 75.4
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.0e-20 102.8 65 75.4
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.0e-20 102.8 64 78.1
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.0e-20 102.8 65 76.9
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.0e-20 102.8 65 76.9
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 1.0e-20 102.8 65 75.4
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.4e-20 102.4 65 75.4
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 1.4e-20 102.4 65 73.8
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 1.4e-20 102.4 65 80.0
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.8e-20 102.1 65 75.4
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.8e-20 102.1 65 76.9
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 2.3e-20 101.7 65 75.4
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 2.3e-20 101.7 65 78.5
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 2.3e-20 101.7 65 76.9
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 2.3e-20 101.7 65 75.4
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 2.3e-20 101.7 65 72.3
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 3.0e-20 101.3 65 75.4
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 3.0e-20 101.3 65 75.4
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 4.0e-20 100.9 65 73.8
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 5.2e-20 100.5 64 75.0
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 5.2e-20 100.5 65 73.8
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 5.2e-20 100.5 65 73.8
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 5.2e-20 100.5 65 72.3
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 8.8e-20 99.8 65 72.3
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.2e-19 99.4 65 75.4
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.2e-19 99.4 65 75.4
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-19 99.4 65 75.4
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-19 99.4 65 75.4
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-19 99.4 65 75.4
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-19 99.4 65 75.4
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-19 99.4 65 75.4
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 2.0e-19 98.6 64 73.4
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.0e-19 98.6 63 76.2
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 2.6e-19 98.2 64 71.9
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 2.6e-19 98.2 65 76.9
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 2.6e-19 98.2 65 73.8
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 3.4e-19 97.8 65 69.2
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 4.4e-19 97.4 65 72.3
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 7.5e-19 96.7 65 73.8
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 1.3e-18 95.9 65 73.8
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.3e-18 95.9 64 67.2
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 1.7e-18 95.5 65 75.4
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 2.8e-18 94.7 64 73.4
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 3.7e-18 94.4 65 66.2
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 4.8e-18 94.0 65 64.6
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 6.3e-18 93.6 65 64.6
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 1.8e-17 92.0 64 68.8
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 2.4e-17 91.7 65 72.3
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 3.1e-17 91.3 65 73.8
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 5.3e-17 90.5 65 70.8
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 7.0e-17 90.1 65 64.6
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 9.1e-17 89.7 65 66.2
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.1e-17 89.7 63 69.8
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.2e-16 89.4 65 66.2
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 7.7e-16 86.7 65 61.5
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 7.2e-14 80.1 65 58.5
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.6e-13 79.0 65 56.9
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 1.4e-12 75.9 42 81.0
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 2.3e-12 75.1 58 65.5
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 7.7e-08 60.1 61 54.1
Zm00001eb170120 Zea mays HOM05D000137 ORTHO05D014725 1.9e-06 55.5 42 61.9
Zm00001eb388940 Zea mays HOM05D004043 ORTHO05D002193 1.9e-06 55.5 42 61.9
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 4.2e-06 54.3 37 75.7


User provided reference genes

Program Settings