Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030762 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.1e-128 463.4 243 100.0
CSS0043842 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 8.7e-86 320.9 241 75.5
CSS0043104 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 3.7e-84 315.5 230 76.5
CSS0035896 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 6.4e-81 304.7 224 76.8
CSS0028580 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 6.7e-78 294.7 218 75.7
Hma1.2p1_0744F.1_g211701 Hydrangea macrophylla HOM05D003462 ORTHO05D003946 2.1e-76 289.7 245 66.1
Dinv38623 Davidia involucrata HOM05D003462 ORTHO05D003946 3.7e-76 288.9 198 77.8
Nn4g23600 Nelumbo nucifera HOM05D003462 ORTHO05D003946 3.7e-76 288.9 245 64.5
GSVIVG01008179001 Vitis vinifera HOM05D003462 ORTHO05D003946 1.4e-75 287.0 245 65.3
Duzib084G0277 Durio zibethinus HOM05D003462 ORTHO05D003946 1.8e-75 286.6 245 65.7
Actinidia35059 Actinidia chinensis HOM05D003462 ORTHO05D003946 4.0e-75 285.4 245 66.1
Sed0016449 Sechium edule HOM05D003462 ORTHO05D003946 4.0e-75 285.4 245 63.7
ClCG06G015340 Citrullus lanatus HOM05D003462 ORTHO05D003946 5.3e-75 285.0 245 64.1
CiPaw.15G117200 Carya illinoinensis HOM05D003462 ORTHO05D003946 9.0e-75 284.3 245 64.5
Gohir.D09G245000 Gossypium hirsutum HOM05D003462 ORTHO05D003946 9.0e-75 284.3 245 64.5
Thecc.03G111900 Theobroma cacao HOM05D003462 ORTHO05D003946 1.2e-74 283.9 245 64.9
PGR083G2784 Punica granatum HOM05D003462 ORTHO05D003946 2.0e-74 283.1 245 64.1
Gohir.A09G244100 Gossypium hirsutum HOM05D003462 ORTHO05D003946 2.6e-74 282.7 245 64.1
Gorai.006G269300 Gossypium raimondii HOM05D003462 ORTHO05D003946 2.6e-74 282.7 245 64.1
QL10p021514 Quercus lobata HOM05D003462 ORTHO05D003946 2.6e-74 282.7 244 63.9
TAR371G0026 Trochodendron aralioides HOM05D003462 ORTHO05D003946 7.6e-74 281.2 245 64.9
Ciclev10019214m.g Citrus clementina HOM05D003462 ORTHO05D003946 1.3e-73 280.4 245 62.9
CSS0029569 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.7e-73 280.0 217 73.3
CSS0013858 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 2.2e-73 279.6 246 65.9
CSS0048759 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 2.2e-73 279.6 246 65.9
Cc04_g07970 Coffea canephora HOM05D003462 ORTHO05D003946 2.9e-73 279.3 245 63.3
Lj5A138T59 Lonicera japonica HOM05D003462 ORTHO05D003946 2.9e-73 279.3 245 62.9
Haze_18545 Corylus avellana HOM05D003462 ORTHO05D003946 8.4e-73 277.7 242 63.6
FvH4_5g13110 Fragaria vesca HOM05D003462 ORTHO05D003946 1.1e-72 277.3 245 62.9
FAN18G1062 Fragaria x ananassa HOM05D003462 ORTHO05D003946 1.1e-72 277.3 245 62.9
Aqoxy3G00588 Aquilegia oxysepala HOM05D003462 ORTHO05D003946 1.4e-72 276.9 245 62.4
Rhsim12G0146800 Rhododendron simsii HOM05D003462 ORTHO05D003946 1.4e-72 276.9 245 63.3
Lalb_Chr23g0274061 Lupinus albus HOM05D003462 ORTHO05D003946 1.9e-72 276.6 245 64.1
MD14G1217600 Malus domestica HOM05D003462 ORTHO05D003946 2.5e-72 276.2 245 61.6
DCAR_010190 Daucus carota HOM05D003462 ORTHO05D003946 3.2e-72 275.8 245 62.4
Manes.01G024300 Manihot esculenta HOM05D003462 ORTHO05D003946 3.2e-72 275.8 245 62.9
Cpa.g.sc3.203 Carica papaya HOM05D003462 ORTHO05D003946 4.2e-72 275.4 245 63.3
Atru.chr9.644 Acer truncatum HOM05D003462 ORTHO05D003946 5.5e-72 275.0 245 62.4
Glyma.17G082700 Glycine max HOM05D003462 ORTHO05D003946 7.1e-72 274.6 245 63.3
Phvul.003G181400 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 7.1e-72 274.6 245 62.9
RcHm_v2.0_Chr7g0184041 Rosa chinensis HOM05D003462 ORTHO05D003946 7.1e-72 274.6 245 61.2
vmacro16468 Vaccinium macrocarpon HOM05D003462 ORTHO05D003946 1.2e-71 273.9 245 62.9
Ca_21746_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 2.1e-71 273.1 245 62.0
PSO017G3345 Papaver somniferum HOM05D003462 ORTHO05D003946 2.1e-71 273.1 245 60.8
TPR.G2020 Trifolium pratense HOM05D003462 ORTHO05D003946 2.1e-71 273.1 245 62.0
Lj4g0004217 Lotus japonicus HOM05D003462 ORTHO05D003946 2.7e-71 272.7 242 62.0
TWI81G0217 Tripterygium wilfordii HOM05D003462 ORTHO05D003946 3.5e-71 272.3 245 64.1
PSO478G2116 Papaver somniferum HOM05D003462 ORTHO05D003946 6.1e-71 271.6 245 60.0
VMungo1215G0716 Vigna mungo HOM05D003462 ORTHO05D003946 1.0e-70 270.8 245 62.0
CANSAT80G0024 Cannabis sativa HOM05D003462 ORTHO05D003946 3.9e-70 268.9 245 60.8
COL.COLO4_28809 Corchorus olitorius HOM05D003462 ORTHO05D003946 5.1e-70 268.5 281 56.6
Sopen03g033710 Solanum pennellii HOM05D003462 ORTHO05D003946 1.1e-69 267.3 245 62.4
Potri.015G047500 Populus trichocarpa HOM05D003462 ORTHO05D003946 1.5e-69 266.9 245 62.0
AUR62032156 Chenopodium quinoa HOM05D003462 ORTHO05D003946 2.5e-69 266.2 245 61.2
AUR62044517 Chenopodium quinoa HOM05D003462 ORTHO05D003946 2.5e-69 266.2 242 62.0
Peaxi162Scf00017g03131 Petunia axillaris HOM05D003462 ORTHO05D003946 2.5e-69 266.2 245 60.4
arahy.Tifrunner.gnm1.ann1.8883SE Arachis hypogaea HOM05D003462 ORTHO05D003946 3.3e-69 265.8 245 60.0
arahy.Tifrunner.gnm1.ann1.HJ4MYC Arachis hypogaea HOM05D003462 ORTHO05D003946 3.3e-69 265.8 245 60.0
MD06G1207100 Malus domestica HOM05D003462 ORTHO05D003946 4.3e-69 265.4 245 60.4
Medtr4g112860 Medicago truncatula HOM05D003462 ORTHO05D003946 4.3e-69 265.4 243 60.9
Sc24g0002690 Simmondsia chinensis HOM05D003462 ORTHO05D003946 7.4e-69 264.6 243 59.7
Solyc03g114640.4 Solanum lycopersicum HOM05D003462 ORTHO05D003946 7.4e-69 264.6 245 61.6
Hund02540 Selenicereus undatus HOM05D003462 ORTHO05D003946 1.3e-68 263.8 245 60.4
HanXRQChr05g0157841 Helianthus annuus HOM05D003462 ORTHO05D003946 1.6e-68 263.5 245 59.2
CAN.G982.30 Capsicum annuum HOM05D003462 ORTHO05D003946 2.2e-68 263.1 245 60.8
MELO3C017261.2 Cucumis melo HOM05D003462 ORTHO05D003946 2.8e-68 262.7 245 59.6
Lalb_Chr12g0197421 Lupinus albus HOM05D003462 ORTHO05D003946 4.8e-68 261.9 245 58.4
Glyma.04G158100 Glycine max HOM05D003462 ORTHO05D003946 6.3e-68 261.5 245 61.2
Oeu031926.1 Olea europaea HOM05D003462 ORTHO05D003946 1.1e-67 260.8 241 61.8
Sabra15G0079500 Salix brachista HOM05D003462 ORTHO05D003946 1.4e-67 260.4 265 57.4
EL10Ac5g11203 Beta vulgaris HOM05D003462 ORTHO05D003946 2.4e-67 259.6 244 59.8
Phvul.009G204100 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 3.1e-67 259.2 245 59.2
Psat1g028640 Pisum sativum HOM05D003462 ORTHO05D003946 1.2e-66 257.3 245 59.6
MSTRG.4505 Avicennia marina HOM05D003462 ORTHO05D003946 1.5e-66 256.9 245 60.8
Glyma.06G207100 Glycine max HOM05D003462 ORTHO05D003946 1.0e-65 254.2 245 59.6
Medtr2g058970 Medicago truncatula HOM05D003462 ORTHO05D003946 2.9e-65 252.7 245 59.2
SalBow1G8183 Salvia bowleyana HOM05D003462 ORTHO05D003946 5.0e-65 251.9 245 59.2
Ca_02712_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 6.5e-65 251.5 245 59.6
Eucgr.K02831 Eucalyptus grandis HOM05D003462 ORTHO05D003946 3.2e-64 249.2 245 57.6
Lsat_1_v5_gn_5_24441 Lactuca sativa HOM05D003462 ORTHO05D003946 3.2e-64 249.2 245 55.5
CDE06G1115 Ceratophyllum demersum HOM05D003462 ORTHO05D003946 6.1e-63 245.0 244 56.1
MSTRG.9572 Avicennia marina HOM05D003462 ORTHO05D003946 1.0e-62 244.2 245 57.1
THA.LOC104812124 Tarenaya hassleriana HOM05D003462 ORTHO05D003946 1.8e-62 243.4 244 55.7
Migut.D01481 Erythranthe guttata HOM05D003462 ORTHO05D003946 3.9e-62 242.3 245 56.3
Aa31LG4G4310 Aethionema arabicum HOM05D003462 ORTHO05D003946 4.3e-61 238.8 244 55.7
Carub.0002s2077 Capsella rubella HOM05D003462 ORTHO05D003946 9.7e-61 237.7 244 55.7
Actinidia18966 Actinidia chinensis HOM05D003462 ORTHO05D003946 1.3e-60 237.3 232 60.8
AL2G33830 Arabidopsis lyrata HOM05D003462 ORTHO05D003946 1.3e-60 237.3 244 55.7
HPP92_017961 Vanilla planifolia HOM05D003462 ORTHO05D003946 1.3e-60 237.3 245 53.9
Thhalv10018225m.g Eutrema salsugineum HOM05D003462 ORTHO05D003946 1.7e-60 236.9 244 55.3
A07p39860 Brassica napus HOM05D003462 ORTHO05D003946 2.2e-60 236.5 244 55.3
BraA07t31532Z Brassica rapa HOM05D003462 ORTHO05D003946 2.2e-60 236.5 244 55.3
BcaC08g46829 Brassica carinata HOM05D003462 ORTHO05D003946 2.8e-60 236.1 244 55.7
C06p48090 Brassica napus HOM05D003462 ORTHO05D007870 2.8e-60 236.1 244 55.3
BolC6t39846H Brassica oleracea HOM05D003462 ORTHO05D003946 2.8e-60 236.1 244 55.3
AT1G73990 Arabidopsis thaliana HOM05D003462 ORTHO05D003946 1.1e-59 234.2 244 54.9
Sp5g29190 Schrenkiella parvula HOM05D003462 ORTHO05D003946 1.1e-59 234.2 244 54.9
SalBow1G4644 Salvia bowleyana HOM05D003462 ORTHO05D003946 1.4e-59 233.8 245 54.3
Migut.D01480 Erythranthe guttata HOM05D003462 ORTHO05D003946 9.1e-59 231.1 245 53.9
TPR.G15309 Trifolium pratense HOM05D003462 ORTHO05D003946 9.1e-59 231.1 245 53.9
Zm00001eb189850 Zea mays HOM05D003462 ORTHO05D003946 1.5e-58 230.3 242 54.1
CARHR067120 Cardamine hirsuta HOM05D003462 ORTHO05D003946 1.3e-57 227.3 244 53.3
ECA246G0130 Erigeron canadensis HOM05D003462 ORTHO05D003946 1.1e-56 224.2 215 58.1
SEGI_03657 Sequoiadendron giganteum HOM05D003462 ORTHO05D003946 1.4e-56 223.8 251 55.4
arahy.Tifrunner.gnm1.ann1.MSU6B8 Arachis hypogaea HOM05D003462 ORTHO05D003946 2.7e-55 219.5 220 57.7
arahy.Tifrunner.gnm1.ann1.V9YTQ9 Arachis hypogaea HOM05D003462 ORTHO05D003946 3.6e-55 219.2 220 57.7
Hund09973 Selenicereus undatus HOM05D003462 ORTHO05D003946 1.0e-54 217.6 244 53.3
ATR0691G062 Amborella trichopoda HOM05D003462 ORTHO05D003946 3.9e-54 215.7 245 50.6
Actinidia01422 Actinidia chinensis HOM05D003462 ORTHO05D003946 6.7e-54 214.9 206 60.7
ATR0691G201 Amborella trichopoda HOM05D003462 ORTHO05D003946 7.0e-51 204.9 245 50.6
FAN08G2364 Fragaria x ananassa HOM05D003462 ORTHO05D003946 4.5e-50 202.2 243 51.4
Prupe.5G211500 Prunus persica HOM05D003462 ORTHO05D003946 2.9e-49 199.5 121 85.1
Duzib205G0774 Durio zibethinus HOM05D003462 ORTHO05D003946 1.1e-48 197.6 210 54.8
HanXRQChr05g0157891 Helianthus annuus HOM05D003462 ORTHO05D003946 1.1e-48 197.6 245 48.2
SGA_v2.0_scaffold171G38939 Striga asiatica HOM05D003462 ORTHO05D003946 1.1e-48 197.6 246 50.4
unitig_22.g6154 Utricularia gibba HOM05D003462 ORTHO05D003946 1.5e-48 197.2 187 61.0
Nitab4.5_0002805g0140 Nicotiana tabacum HOM05D003462 ORTHO05D003946 5.5e-48 195.3 125 81.6
CSS0043461 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 9.4e-48 194.5 218 56.0
Lj1g0015888 Lotus japonicus HOM05D003462 ORTHO05D003946 2.7e-47 193.0 125 81.6
AUR62036912 Chenopodium quinoa HOM05D003462 ORTHO05D003946 3.6e-47 192.6 119 84.0
Lsat_1_v5_gn_5_24760 Lactuca sativa HOM05D003462 ORTHO05D003946 3.6e-47 192.6 245 49.8
ECA246G4431 Erigeron canadensis HOM05D003462 ORTHO05D003946 2.3e-46 189.9 241 48.1
Nitab4.5_0000646g0270 Nicotiana tabacum HOM05D003462 ORTHO05D003946 3.0e-46 189.5 245 49.4
Lsat_1_v5_gn_5_24941 Lactuca sativa HOM05D003462 ORTHO05D003946 1.1e-45 187.6 245 48.6
FAN13G0008 Fragaria x ananassa HOM05D003462 ORTHO05D003946 1.5e-45 187.2 124 78.2
QL10p021433 Quercus lobata HOM05D003462 ORTHO05D003946 1.7e-44 183.7 125 76.8
SMO147G0360 Selaginella moellendorffii HOM05D003462 ORTHO05D003946 1.7e-44 183.7 234 49.6
unitig_749.g14105 Utricularia gibba HOM05D003462 ORTHO05D003946 2.4e-43 179.9 123 75.6
Cc00_g05440 Coffea canephora HOM05D003462 ORTHO05D003946 5.5e-40 168.7 210 49.5
RcHm_v2.0_Chr7g0184031 Rosa chinensis HOM05D003462 ORTHO05D003946 2.7e-39 166.4 150 63.3
Mapoly0008s0093 Marchantia polymorpha HOM05D003462 ORTHO05D003946 4.7e-39 165.6 119 71.4
AagrBONN_evm.TU.Sc2ySwM_117.3359 Anthoceros agrestis HOM05D003462 ORTHO05D003946 1.2e-37 161.0 125 67.2
Pp3c3_13550 Physcomitrium patens HOM05D003462 ORTHO05D003946 1.5e-37 160.6 172 54.7
Pp3c3_13555 Physcomitrium patens HOM05D003462 ORTHO05D003946 1.5e-37 160.6 172 54.7
CsaV3_1G003220 Cucumis sativus L. HOM05D003462 ORTHO05D003946 1.3e-36 157.5 90 90.0
Cre10.g444550 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 3.1e-35 152.9 121 69.4
Medtr4g134260 Medicago truncatula HOM05D003462 ORTHO05D003946 2.7e-34 149.8 170 51.2
FAN18G1391 Fragaria x ananassa HOM05D003462 ORTHO05D003946 3.8e-33 146.0 152 57.9
Psat4g045480 Pisum sativum HOM05D003462 ORTHO05D003946 7.2e-32 141.7 91 79.1
Medtr4g112820 Medicago truncatula HOM05D003462 ORTHO05D003946 9.4e-32 141.4 125 62.4
AagrBONN_evm.TU.Sc2ySwM_368.89 Anthoceros agrestis HOM05D003462 ORTHO05D003946 4.0e-30 136.0 125 58.4
Os02g0728100 Oryza sativa ssp. japonica HOM05D003462 ORTHO05D003946 1.2e-29 134.4 91 76.9
HanXRQChr09g0240321 Helianthus annuus HOM05D003462 ORTHO05D003946 2.2e-28 130.2 112 59.8
HanXRQChr09g0240811 Helianthus annuus HOM05D003462 ORTHO05D003946 1.1e-27 127.9 106 62.3
RcHm_v2.0_Chr6g0264331 Rosa chinensis HOM05D003462 ORTHO05D003946 5.4e-27 125.6 74 86.5
AUR62039689 Chenopodium quinoa HOM05D003462 ORTHO05D003946 7.0e-27 125.2 138 52.9
Actinidia27195 Actinidia chinensis HOM05D003462 ORTHO05D003946 2.7e-26 123.2 171 49.7
ECA236G4192 Erigeron canadensis HOM05D003462 ORTHO05D003946 5.0e-25 119.0 78 76.9
RcHm_v2.0_Chr2g0126491 Rosa chinensis HOM05D003462 ORTHO05D003946 1.1e-24 117.9 201 42.3
GSVIVG01008177001 Vitis vinifera HOM05D003462 ORTHO05D003946 1.2e-23 114.4 79 74.7
CBR_g31190 Chara braunii HOM05D003462 ORTHO05D003946 6.8e-22 108.6 73 75.3
Cfa017727 Carpinus fangiana HOM05D003462 ORTHO05D003946 3.4e-21 106.3 86 66.3
TPR.G35192 Trifolium pratense HOM05D003462 ORTHO05D003946 4.9e-20 102.4 91 57.1
Rhsim08G0140500 Rhododendron simsii HOM05D003462 ORTHO05D003946 4.1e-19 99.4 63 76.2
PGSC0003DMG401024517 Solanum tuberosum HOM05D003462 ORTHO05D003946 4.1e-19 99.4 88 58.0
Dinv36836 Davidia involucrata HOM05D003462 ORTHO05D003946 5.4e-19 99.0 59 89.8
Medtr8g022500 Medicago truncatula HOM05D003462 ORTHO05D003946 4.5e-18 95.9 126 51.6
RcHm_v2.0_Chr2g0152701 Rosa chinensis HOM05D003462 ORTHO05D003946 2.3e-17 93.6 151 44.4
Cfa017729 Carpinus fangiana HOM05D003462 ORTHO05D003946 8.6e-17 91.7 57 84.2
Cre06.g267700 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 4.3e-16 89.4 115 46.1
HanXRQChr05g0157881 Helianthus annuus HOM05D003462 ORTHO05D003946 2.3e-14 83.6 154 37.0
FvH4_5g13112 Fragaria vesca HOM05D003462 ORTHO05D003946 4.0e-14 82.8 57 70.2
Medtr4g123500 Medicago truncatula HOM05D003462 ORTHO05D003946 2.4e-11 73.6 119 40.3
Medtr5g082990 Medicago truncatula HOM05D003462 ORTHO05D003946 1.0e-09 68.2 56 67.9
Medtr5g025810 Medicago truncatula HOM05D003462 ORTHO05D003946 4.3e-08 62.8 174 31.0
unitig_749.g14106 Utricularia gibba HOM05D003462 ORTHO05D003946 4.3e-08 62.8 77 49.4
Medtr4g130550 Medicago truncatula HOM05D003462 ORTHO05D003946 9.5e-08 61.6 135 33.3
Ca_29357_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 1.8e-06 57.4 108 33.3
PRCOL_00001689 Prasinoderma coloniale HOM05D003462 ORTHO05D003946 5.2e-06 55.8 148 31.8


User provided reference genes

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