Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.0e-135 485.7 244 100.0
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.4e-61 238.8 178 77.5
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 1.2e-50 204.1 173 65.3
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 3.2e-48 196.1 173 62.4
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 2.2e-44 183.3 175 61.7
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 1.2e-42 177.6 199 57.3
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 8.6e-41 171.4 175 56.0
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 1.1e-40 171.0 175 57.7
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 1.5e-40 170.6 175 57.7
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.5e-40 168.7 176 56.2
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 3.0e-38 162.9 173 54.9
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.7e-37 158.7 176 56.2
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 5.7e-37 158.7 175 57.1
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 1.3e-36 157.5 222 47.7
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 1.7e-36 157.1 176 54.0
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 3.7e-36 156.0 175 54.9
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.1e-35 152.5 147 60.5
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.6e-34 150.6 173 52.0
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 2.0e-34 150.2 177 52.0
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 2.7e-34 149.8 175 53.1
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 3.5e-34 149.4 197 48.2
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 5.9e-34 148.7 235 43.4
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 7.8e-34 148.3 175 54.3
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 1.3e-33 147.5 192 50.5
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.9e-33 146.4 175 53.1
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 3.8e-33 146.0 194 50.0
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 5.0e-33 145.6 173 51.4
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 6.6e-33 145.2 208 48.6
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 6.6e-33 145.2 208 48.6
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 6.6e-33 145.2 178 52.2
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 8.6e-33 144.8 173 50.9
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.1e-32 144.4 175 52.6
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 1.5e-32 144.1 194 49.5
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 1.9e-32 143.7 175 53.1
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 1.9e-32 143.7 175 52.6
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 2.5e-32 143.3 175 53.7
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 3.3e-32 142.9 172 51.7
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 3.3e-32 142.9 175 51.4
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 4.3e-32 142.5 173 52.0
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 5.6e-32 142.1 173 50.3
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 7.3e-32 141.7 203 47.3
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 9.5e-32 141.4 208 46.2
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 9.5e-32 141.4 176 50.0
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 9.5e-32 141.4 177 52.5
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 1.2e-31 141.0 173 50.3
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 1.2e-31 141.0 175 52.0
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 2.1e-31 140.2 175 50.9
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 2.8e-31 139.8 194 47.9
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.6e-31 139.4 175 50.3
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 3.6e-31 139.4 192 45.8
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 3.6e-31 139.4 192 45.8
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 3.6e-31 139.4 173 52.0
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 4.7e-31 139.0 199 47.2
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 6.1e-31 138.7 201 48.3
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 6.1e-31 138.7 173 51.4
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 6.1e-31 138.7 178 48.9
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 8.0e-31 138.3 175 50.9
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 1.0e-30 137.9 175 51.4
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 1.4e-30 137.5 194 45.4
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 1.4e-30 137.5 194 48.5
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 1.8e-30 137.1 199 48.7
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.8e-30 137.1 192 45.3
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 2.3e-30 136.7 176 49.4
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 2.3e-30 136.7 203 47.8
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 4.0e-30 136.0 194 46.4
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 4.0e-30 136.0 203 44.3
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 4.0e-30 136.0 176 49.4
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 4.0e-30 136.0 176 49.4
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 5.2e-30 135.6 194 46.9
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 8.9e-30 134.8 216 44.4
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 8.9e-30 134.8 175 48.6
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 8.9e-30 134.8 175 52.0
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 1.2e-29 134.4 177 51.4
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 1.2e-29 134.4 177 52.0
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 1.2e-29 134.4 181 48.1
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.2e-29 134.4 175 50.9
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 1.5e-29 134.0 177 51.4
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.5e-29 134.0 189 45.5
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 2.6e-29 133.3 176 49.4
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 4.4e-29 132.5 175 47.4
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 4.4e-29 132.5 175 47.4
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 5.8e-29 132.1 176 48.9
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 5.8e-29 132.1 175 47.4
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 5.8e-29 132.1 175 51.4
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 7.5e-29 131.7 213 48.4
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 1.3e-28 131.0 177 48.6
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 2.9e-28 129.8 176 48.9
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 2.9e-28 129.8 259 37.5
Actinidia14176 Actinidia chinensis HOM05D003593 ORTHO05D004064 3.7e-28 129.4 153 51.0
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 3.7e-28 129.4 179 49.2
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 6.4e-28 128.6 185 48.1
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 6.4e-28 128.6 175 50.3
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 1.9e-27 127.1 173 48.0
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 4.1e-27 125.9 211 40.3
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 4.1e-27 125.9 211 41.2
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 5.4e-27 125.6 174 47.7
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 7.0e-27 125.2 194 44.3
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 9.2e-27 124.8 173 47.4
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 1.2e-26 124.4 175 46.9
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 2.0e-26 123.6 127 57.5
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 2.0e-26 123.6 173 46.2
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 3.5e-26 122.9 175 44.6
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 3.5e-26 122.9 214 40.2
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 4.6e-26 122.5 140 53.6
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 4.6e-26 122.5 143 53.1
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 6.0e-26 122.1 129 54.3
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 7.8e-26 121.7 175 48.0
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 1.0e-25 121.3 193 44.0
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.3e-25 120.9 126 57.9
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.3e-25 120.9 126 57.9
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 2.3e-25 120.2 195 45.1
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 2.3e-25 120.2 172 45.3
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 5.0e-25 119.0 195 42.6
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 6.6e-25 118.6 199 42.2
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 8.6e-25 118.2 176 45.5
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 8.6e-25 118.2 176 45.5
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 8.6e-25 118.2 173 45.7
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 8.6e-25 118.2 199 42.7
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 1.5e-24 117.5 176 45.5
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 1.5e-24 117.5 176 44.3
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 1.9e-24 117.1 199 45.2
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 1.9e-24 117.1 199 41.7
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 1.9e-24 117.1 208 40.4
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 2.5e-24 116.7 176 44.9
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 3.3e-24 116.3 199 41.2
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 5.6e-24 115.5 176 44.9
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 5.6e-24 115.5 154 48.1
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 7.3e-24 115.2 175 47.4
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 1.2e-23 114.4 169 46.7
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.6e-23 114.0 175 42.9
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 3.6e-23 112.8 154 48.1
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 6.2e-23 112.1 180 46.1
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 8.0e-23 111.7 186 41.4
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 8.0e-23 111.7 177 45.2
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 1.8e-22 110.5 192 38.0
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 6.8e-22 108.6 191 40.8
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 6.8e-22 108.6 142 47.2
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 1.5e-21 107.5 175 42.9
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 2.0e-21 107.1 233 35.6
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 7.5e-21 105.1 195 41.0
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 9.8e-21 104.8 199 38.7
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 1.3e-20 104.4 116 50.0
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 1.7e-20 104.0 199 39.7
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.2e-20 103.6 153 44.4
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 2.9e-20 103.2 85 65.9
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.9e-19 100.5 142 47.2
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.9e-19 100.5 143 46.2
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 2.4e-19 100.1 175 40.6
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 2.4e-19 100.1 172 40.7
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 3.2e-19 99.8 194 38.7
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 7.0e-19 98.6 169 42.6
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 9.2e-19 98.2 141 46.1
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 9.2e-19 98.2 141 46.1
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 9.2e-19 98.2 141 46.1
Haze_22055 Corylus avellana HOM05D003593 ORTHO05D004064 2.1e-18 97.1 172 40.7
Glyma.02G282202 Glycine max HOM05D003593 ORTHO05D004064 3.5e-18 96.3 90 58.9
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 7.8e-18 95.1 161 41.0
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 1.7e-17 94.0 175 41.7
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 8.6e-17 91.7 159 46.5
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 1.1e-16 91.3 143 43.4
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 1.5e-16 90.9 146 42.5
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 2.5e-16 90.1 153 39.9
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 4.0e-14 82.8 169 37.3
arahy.Tifrunner.gnm1.ann1.0CTM64 Arachis hypogaea HOM05D003593 ORTHO05D004064 2.6e-13 80.1 173 38.7
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 4.1e-11 72.8 72 58.3
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 1.6e-10 70.9 213 31.5
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 2.1e-10 70.5 75 52.0
MBI16_g09339_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 7.8e-10 68.6 54 68.5
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 3.0e-09 66.6 186 30.1
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 6.6e-09 65.5 92 43.5
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 8.6e-09 65.1 48 72.9
C04p36780 Brassica napus HOM05D003593 ORTHO05D004064 1.1e-08 64.7 60 63.3
MBI16_g41745_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 1.5e-08 64.3 46 76.1
CSS0001594 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.3e-08 62.8 85 44.7
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 1.6e-07 60.8 75 46.7
Oeu048106.1 Olea europaea HOM05D003593 ORTHO05D004064 4.7e-07 59.3 44 72.7
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 8.9e-06 55.1 191 28.8


User provided reference genes

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