Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 6.1e-64 247.3 122 100.0
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 2.3e-63 245.4 122 99.2
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 7.3e-33 144.1 105 72.4
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 2.6e-30 135.6 105 68.6
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 9.9e-30 133.7 104 68.3
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 1.7e-29 132.9 104 67.3
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 3.8e-29 131.7 104 66.3
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 3.8e-29 131.7 121 58.7
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 6.4e-29 131.0 103 67.0
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 6.4e-29 131.0 116 61.2
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 8.4e-29 130.6 104 66.3
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 8.4e-29 130.6 102 69.6
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 1.1e-28 130.2 105 65.7
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 1.1e-28 130.2 114 61.4
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 1.4e-28 129.8 107 64.5
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 1.9e-28 129.4 107 63.6
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 1.9e-28 129.4 104 66.3
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 2.4e-28 129.0 103 66.0
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 3.2e-28 128.6 104 65.4
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 3.2e-28 128.6 103 66.0
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 4.2e-28 128.3 103 65.0
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 4.2e-28 128.3 104 66.3
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 4.2e-28 128.3 103 65.0
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 4.2e-28 128.3 104 65.4
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 7.1e-28 127.5 103 65.0
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 7.1e-28 127.5 104 65.4
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 7.1e-28 127.5 102 66.7
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 7.1e-28 127.5 109 60.6
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 9.3e-28 127.1 105 64.8
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 9.3e-28 127.1 101 66.3
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 9.3e-28 127.1 103 65.0
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 9.3e-28 127.1 106 63.2
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 9.3e-28 127.1 104 66.3
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 1.2e-27 126.7 103 65.0
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 1.6e-27 126.3 105 62.9
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 1.6e-27 126.3 104 64.4
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 2.1e-27 125.9 103 65.0
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 2.1e-27 125.9 102 66.7
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 2.7e-27 125.6 104 64.4
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 2.7e-27 125.6 103 64.1
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 3.5e-27 125.2 104 64.4
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 3.5e-27 125.2 104 62.5
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 3.5e-27 125.2 104 63.5
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 4.6e-27 124.8 104 64.4
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 4.6e-27 124.8 104 63.5
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 4.6e-27 124.8 104 63.5
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 7.8e-27 124.0 104 64.4
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 7.8e-27 124.0 105 61.0
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 7.8e-27 124.0 105 61.0
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.0e-26 123.6 105 61.0
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 1.0e-26 123.6 104 61.5
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 1.3e-26 123.2 104 64.4
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 1.3e-26 123.2 104 64.4
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.7e-26 122.9 104 63.5
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 1.7e-26 122.9 107 59.8
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 2.3e-26 122.5 103 63.1
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 2.3e-26 122.5 104 64.4
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 2.3e-26 122.5 104 63.5
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 2.3e-26 122.5 108 60.2
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 2.3e-26 122.5 104 62.5
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 3.0e-26 122.1 104 64.4
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 3.0e-26 122.1 104 64.4
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 3.0e-26 122.1 104 64.4
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 3.9e-26 121.7 105 62.9
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 3.9e-26 121.7 110 60.0
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 3.9e-26 121.7 104 62.5
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 3.9e-26 121.7 104 61.5
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 5.1e-26 121.3 116 59.5
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 5.1e-26 121.3 109 59.6
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 5.1e-26 121.3 104 62.5
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 5.1e-26 121.3 103 62.1
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 6.6e-26 120.9 103 62.1
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 8.7e-26 120.6 103 63.1
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 8.7e-26 120.6 98 66.3
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 8.7e-26 120.6 98 65.3
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 1.1e-25 120.2 104 62.5
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 1.1e-25 120.2 104 62.5
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 1.1e-25 120.2 103 63.1
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 1.1e-25 120.2 103 63.1
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 1.5e-25 119.8 104 62.5
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 1.5e-25 119.8 104 62.5
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 1.5e-25 119.8 110 60.9
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 1.5e-25 119.8 103 63.1
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.5e-25 119.8 98 64.3
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.5e-25 119.8 98 64.3
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 1.5e-25 119.8 103 62.1
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 1.9e-25 119.4 104 61.5
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 3.3e-25 118.6 104 62.5
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 3.3e-25 118.6 104 58.7
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 3.3e-25 118.6 104 61.5
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 4.3e-25 118.2 99 64.6
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 5.6e-25 117.9 108 63.0
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 9.6e-25 117.1 103 63.1
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 9.6e-25 117.1 104 61.5
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 1.3e-24 116.7 104 61.5
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 1.3e-24 116.7 104 61.5
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 2.8e-24 115.5 100 62.0
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 3.6e-24 115.2 99 61.6
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 3.6e-24 115.2 104 60.6
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 4.8e-24 114.8 104 60.6
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 4.8e-24 114.8 102 59.8
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 6.2e-24 114.4 103 61.2
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 8.1e-24 114.0 99 60.6
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 8.1e-24 114.0 102 59.8
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 8.1e-24 114.0 102 59.8
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 1.1e-23 113.6 101 58.4
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.4e-23 113.2 101 60.4
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 1.8e-23 112.8 101 57.4
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 3.1e-23 112.1 104 59.6
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 3.1e-23 112.1 102 58.8
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 4.0e-23 111.7 101 59.4
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 4.0e-23 111.7 101 59.4
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 4.0e-23 111.7 101 59.4
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 4.0e-23 111.7 105 58.1
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 6.9e-23 110.9 103 59.2
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 6.9e-23 110.9 102 58.8
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 1.2e-22 110.2 105 57.1
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 1.5e-22 109.8 104 57.7
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 2.0e-22 109.4 105 57.1
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 2.6e-22 109.0 105 54.3
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 3.4e-22 108.6 103 55.3
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 9.9e-22 107.1 105 57.1
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 9.9e-22 107.1 105 57.1
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 2.2e-21 105.9 107 53.3
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 2.4e-20 102.4 61 75.4
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 4.6e-19 98.2 65 67.7
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 7.3e-17 90.9 59 69.5
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 8.1e-16 87.4 156 38.5
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 1.1e-15 87.0 59 67.8
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.4e-15 86.7 65 61.5
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 1.4e-15 86.7 60 66.7
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 4.0e-15 85.1 60 65.0
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 5.3e-15 84.7 60 63.3
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 4.5e-14 81.6 60 61.7
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 9.9e-14 80.5 59 57.6
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 4.9e-13 78.2 104 46.2
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.4e-12 76.6 102 48.0
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 9.3e-12 73.9 89 49.4
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 1.6e-11 73.2 91 48.4
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.8e-10 69.7 89 47.2
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 2.3e-10 69.3 59 52.5
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 1.9e-09 66.2 66 59.1
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 4.8e-08 61.6 82 40.2
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.1e-07 60.5 34 73.5


User provided reference genes

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