Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 1.1e-226 789.6 409 100.0
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 3.1e-221 771.5 409 98.3
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 4.2e-173 611.7 388 83.5
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 4.0e-168 595.1 399 81.2
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 9.3e-165 583.9 447 71.8
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 1.5e-162 576.6 396 78.5
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 2.5e-162 575.9 395 78.5
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 1.6e-161 573.2 385 78.4
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 1.7e-158 563.1 404 76.0
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 2.2e-158 562.8 397 76.6
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 1.1e-157 560.5 392 76.8
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 1.4e-157 560.1 386 79.0
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 3.2e-157 558.9 396 76.0
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 5.1e-155 551.6 347 81.6
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 8.7e-155 550.8 356 80.6
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 5.6e-154 548.1 403 75.4
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 1.3e-153 547.0 340 83.2
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 2.8e-153 545.8 382 75.4
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 2.8e-153 545.8 377 77.7
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 8.1e-153 544.3 408 72.8
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 1.1e-152 543.9 392 74.0
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 3.1e-152 542.3 369 77.8
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 4.0e-152 542.0 374 75.7
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 5.3e-152 541.6 400 75.0
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 6.9e-152 541.2 396 73.7
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 9.0e-152 540.8 362 77.9
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 2.0e-151 539.7 389 74.6
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 3.4e-151 538.9 412 70.6
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 3.4e-151 538.9 396 73.7
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 4.5e-151 538.5 400 73.2
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 4.5e-151 538.5 375 75.5
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 4.5e-151 538.5 361 78.7
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 5.8e-151 538.1 412 70.6
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 9.9e-151 537.3 360 77.8
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 9.9e-151 537.3 396 73.5
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 1.7e-150 536.6 420 70.5
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 1.7e-150 536.6 392 73.2
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 2.2e-150 536.2 412 70.4
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 2.2e-150 536.2 412 70.4
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 2.2e-150 536.2 396 72.7
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 2.9e-150 535.8 400 74.0
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 4.9e-150 535.0 372 76.1
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 6.4e-150 534.6 374 74.6
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 8.4e-150 534.3 396 72.2
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 1.1e-149 533.9 375 75.2
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.4e-149 533.5 396 73.2
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.4e-149 533.5 396 73.2
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 1.9e-149 533.1 368 75.5
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 1.9e-149 533.1 382 74.1
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.2e-148 530.4 395 72.4
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 2.1e-148 529.6 368 74.2
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 6.0e-148 528.1 377 74.8
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 1.3e-147 526.9 368 74.5
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 1.5e-146 523.5 377 74.3
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 4.3e-146 521.9 341 79.8
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 7.4e-146 521.2 363 74.9
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 1.6e-145 520.0 350 78.6
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 1.6e-145 520.0 366 76.5
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 1.6e-145 520.0 374 73.8
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 2.8e-145 519.2 354 76.3
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 4.8e-145 518.5 363 76.0
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 8.2e-145 517.7 404 69.1
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 4.0e-144 515.4 408 68.4
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 6.9e-144 514.6 393 72.0
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 1.5e-143 513.5 420 68.3
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 4.5e-143 511.9 373 73.7
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 5.8e-143 511.5 357 77.0
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 7.6e-143 511.1 359 75.8
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 1.0e-142 510.8 391 70.8
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 2.9e-142 509.2 357 76.8
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 2.5e-141 506.1 402 70.4
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 2.5e-141 506.1 372 74.5
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 6.1e-140 501.5 307 85.0
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 3.9e-139 498.8 347 76.9
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 3.1e-136 489.2 400 70.5
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 3.4e-135 485.7 333 76.6
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 7.7e-135 484.6 378 70.6
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 5.0e-134 481.9 400 68.2
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 8.5e-134 481.1 361 72.6
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 8.5e-134 481.1 373 69.7
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 1.9e-133 479.9 359 69.6
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 1.9e-133 479.9 361 72.6
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 3.2e-133 479.2 372 69.6
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 3.2e-133 479.2 371 68.2
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 5.5e-133 478.4 365 68.8
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 7.2e-133 478.0 294 84.0
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 1.6e-132 476.9 344 73.3
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 2.2e-129 466.5 383 65.8
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 6.9e-128 461.5 321 71.0
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 2.9e-126 456.1 381 66.9
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 4.1e-120 435.6 316 71.8
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 2.5e-117 426.4 301 76.1
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 1.6e-111 407.1 288 70.5
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 1.6e-111 407.1 362 62.4
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 2.0e-106 390.2 318 63.5
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 1.2e-100 370.9 239 79.9
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 1.6e-84 317.4 350 53.7
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 5.8e-82 308.9 373 44.2
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 3.2e-80 303.1 199 75.9
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 1.2e-79 301.2 240 70.0
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 2.7e-79 300.1 311 50.8
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 1.3e-78 297.7 428 46.7
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 1.7e-78 297.4 295 62.4
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 4.3e-77 292.7 335 46.6
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 1.2e-74 284.6 282 61.3
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 1.2e-74 284.6 900 30.0
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 2.3e-70 270.4 232 57.8
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 3.3e-69 266.5 266 57.5
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 6.2e-68 262.3 157 85.4
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 1.2e-55 221.5 141 78.0
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 9.0e-51 205.3 157 73.2
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 2.0e-42 177.6 137 70.8
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 3.8e-41 173.3 108 83.3
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 6.7e-38 162.5 177 54.8
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 1.5e-34 151.4 250 38.0
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 8.4e-25 119.0 82 74.4
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 1.0e-14 85.5 46 89.1
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 1.0e-14 85.5 255 29.8
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 1.4e-14 85.1 79 59.5
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 3.9e-14 83.6 48 85.4
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 2.2e-12 77.8 329 25.2
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 8.2e-12 75.9 49 71.4
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 7.7e-10 69.3 72 56.9
arahy.Tifrunner.gnm1.ann1.63F50L Arachis hypogaea HOM05D000300 ORTHO05D000383 5.1e-06 56.6 58 58.6


User provided reference genes

Program Settings