Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.5e-87 326.2 177 100.0
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 3.4e-71 271.9 150 99.3
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 7.3e-34 147.9 176 53.4
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.3e-33 147.1 161 59.0
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 2.8e-33 146.0 161 57.1
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 8.1e-33 144.4 172 54.7
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 1.1e-32 144.1 166 56.0
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 1.4e-32 143.7 175 49.7
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 2.4e-32 142.9 180 57.2
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 6.9e-32 141.4 170 48.2
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.5e-31 140.2 169 49.7
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 9.9e-31 137.5 173 49.1
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 9.9e-31 137.5 170 48.2
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 1.3e-30 137.1 176 48.9
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 1.3e-30 137.1 173 49.1
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 2.2e-30 136.3 179 47.5
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 2.2e-30 136.3 147 53.7
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 2.2e-30 136.3 178 45.5
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.9e-30 136.0 169 49.1
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 2.9e-30 136.0 170 48.2
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 1.4e-29 133.7 153 49.0
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 2.4e-29 132.9 185 48.1
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 3.2e-29 132.5 163 54.6
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 3.2e-29 132.5 172 47.7
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 3.2e-29 132.5 171 46.8
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 7.1e-29 131.3 163 56.4
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 7.1e-29 131.3 169 47.9
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 2.1e-28 129.8 161 49.7
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 2.1e-28 129.8 172 46.5
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 2.1e-28 129.8 152 52.6
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 2.1e-28 129.8 180 42.8
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 3.5e-28 129.0 160 46.2
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 4.6e-28 128.6 161 47.8
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 7.9e-28 127.9 163 57.1
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 1.0e-27 127.5 151 53.0
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 3.0e-27 125.9 145 49.7
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 3.9e-27 125.6 153 50.3
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 5.1e-27 125.2 177 45.2
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 1.1e-26 124.0 150 48.7
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 1.1e-26 124.0 190 43.7
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 1.5e-26 123.6 162 54.9
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.5e-26 123.6 164 45.7
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 2.5e-26 122.9 184 51.6
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.5e-26 122.9 174 47.1
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.5e-26 122.9 144 52.8
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 4.3e-26 122.1 167 49.1
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 4.3e-26 122.1 145 49.0
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 5.6e-26 121.7 179 41.9
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 7.4e-26 121.3 135 60.0
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 7.4e-26 121.3 155 47.7
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 7.4e-26 121.3 171 46.2
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 1.3e-25 120.6 131 51.1
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.6e-25 120.2 170 46.5
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 1.6e-25 120.2 149 46.3
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 1.6e-25 120.2 149 46.3
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 1.6e-25 120.2 173 44.5
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 3.7e-25 119.0 168 44.0
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 3.7e-25 119.0 142 48.6
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.7e-25 119.0 142 48.6
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 3.7e-25 119.0 185 43.2
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 3.7e-25 119.0 157 46.5
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 4.8e-25 118.6 179 40.2
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 6.2e-25 118.2 162 46.3
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 1.1e-24 117.5 138 50.7
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 1.8e-24 116.7 153 47.7
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.0e-24 115.5 162 45.1
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 4.0e-24 115.5 171 43.9
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 5.3e-24 115.2 148 48.6
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 6.9e-24 114.8 162 45.1
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 9.0e-24 114.4 171 43.9
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.5e-23 113.6 128 46.9
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.0e-23 113.2 135 54.1
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 2.0e-23 113.2 168 46.4
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.6e-23 112.8 170 43.5
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 3.4e-23 112.5 178 42.7
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 3.4e-23 112.5 145 43.4
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 3.4e-23 112.5 145 43.4
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 4.5e-23 112.1 158 47.5
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 4.5e-23 112.1 167 43.7
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 5.8e-23 111.7 170 41.8
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 1.0e-22 110.9 114 57.9
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 1.3e-22 110.5 150 45.3
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 1.7e-22 110.2 163 45.4
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 2.2e-22 109.8 150 45.3
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 2.2e-22 109.8 169 49.7
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 3.8e-22 109.0 137 47.4
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 8.4e-22 107.8 187 41.2
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.2e-21 105.9 138 45.7
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 3.2e-21 105.9 161 44.1
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 5.5e-21 105.1 150 43.3
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 1.2e-20 104.0 151 43.0
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 4.6e-20 102.1 125 49.6
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 6.0e-20 101.7 153 46.4
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 1.8e-19 100.1 148 44.6
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 3.0e-19 99.4 155 40.6
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 6.7e-19 98.2 144 42.4
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 1.1e-18 97.4 109 50.5
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 2.5e-18 96.3 134 41.0
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 7.4e-18 94.7 158 41.8
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 9.6e-18 94.4 164 40.2
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.8e-17 92.8 160 41.9
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.8e-17 92.8 160 41.9
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.1e-16 90.9 160 40.6
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 5.3e-16 88.6 162 40.1
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 9.0e-16 87.8 144 36.8
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 2.0e-15 86.7 162 37.7
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 3.4e-15 85.9 161 37.9
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 4.5e-15 85.5 129 39.5
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 5.8e-15 85.1 128 40.6
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 5.8e-15 85.1 128 40.6
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 1.7e-14 83.6 129 38.8
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 1.7e-14 83.6 122 41.0
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 1.7e-14 83.6 69 60.9
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.2e-14 83.2 108 52.8
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 2.2e-14 83.2 122 41.0
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 2.9e-14 82.8 156 37.2
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 2.9e-14 82.8 156 37.2
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 2.9e-14 82.8 122 41.0
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 2.9e-14 82.8 156 37.2
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 2.9e-14 82.8 122 41.0
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 2.9e-14 82.8 154 39.6
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 3.8e-14 82.4 162 38.3
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 3.8e-14 82.4 161 37.9
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 5.0e-14 82.0 161 37.9
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 5.0e-14 82.0 165 35.8
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 6.5e-14 81.6 116 44.8
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 8.4e-14 81.3 165 35.8
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 1.4e-13 80.5 89 47.2
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 2.5e-13 79.7 162 36.4
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 5.5e-13 78.6 165 35.2
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 5.5e-13 78.6 165 35.2
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 7.2e-13 78.2 116 44.8
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 9.3e-13 77.8 147 36.7
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 2.3e-11 73.2 178 36.0
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 3.9e-11 72.4 75 50.7
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 1.1e-10 70.9 68 58.8
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 5.7e-10 68.6 161 34.2
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 1.1e-08 64.3 104 31.7
Migut.E00712 Erythranthe guttata HOM05D005336 ORTHO05D006511 1.8e-08 63.5 105 51.4
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 5.3e-08 62.0 154 30.5
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.2e-07 60.8 154 33.8
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 1.2e-07 60.8 111 32.4
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 4.5e-07 58.9 180 27.8
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.7e-06 57.0 157 32.5
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.7e-06 57.0 157 32.5
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.7e-06 57.0 106 35.8
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 2.9e-06 56.2 168 31.5
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 3.8e-06 55.8 98 35.7
Os04g0105200 Oryza sativa ssp. japonica HOM05D005336 ORTHO05D006511 8.5e-06 54.7 122 28.7


User provided reference genes

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