Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.2e-251 871.3 449 100.0
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 1.5e-224 782.7 435 89.9
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.5e-221 772.7 435 89.9
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 4.5e-221 771.2 428 90.0
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 7.7e-221 770.4 435 88.7
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 1.0e-220 770.0 428 90.4
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 1.3e-220 769.6 435 89.4
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 2.2e-220 768.8 435 88.7
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 2.2e-220 768.8 435 88.7
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 2.2e-220 768.8 432 89.1
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 8.5e-220 766.9 435 89.0
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 8.5e-220 766.9 431 89.6
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 1.4e-219 766.1 430 89.1
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 5.5e-219 764.2 430 89.1
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 9.4e-219 763.5 427 89.5
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 1.2e-218 763.1 435 88.5
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 6.1e-218 760.8 435 87.4
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 5.1e-217 757.7 435 89.2
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 8.8e-217 756.9 428 88.3
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 8.8e-217 756.9 429 88.3
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.7e-216 754.2 426 88.5
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 1.3e-215 753.1 435 87.1
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.8e-215 751.9 435 87.1
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 3.7e-215 751.5 435 86.2
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 3.7e-215 751.5 430 86.5
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 3.7e-215 751.5 435 87.1
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 4.8e-215 751.1 435 87.4
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 8.2e-215 750.4 435 86.4
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 1.1e-214 750.0 431 86.8
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 3.1e-214 748.4 435 85.5
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 3.1e-214 748.4 435 86.2
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 3.1e-214 748.4 431 87.2
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 4.1e-214 748.0 435 86.2
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 4.1e-214 748.0 435 86.4
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 4.1e-214 748.0 435 84.1
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 5.3e-214 747.7 433 85.9
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 5.3e-214 747.7 432 86.6
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 5.3e-214 747.7 435 86.2
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 6.9e-214 747.3 435 86.0
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 6.9e-214 747.3 435 86.0
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 1.2e-213 746.5 435 86.4
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.5e-213 746.1 430 88.1
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 1.5e-213 746.1 429 86.2
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 2.0e-213 745.7 435 85.3
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 2.0e-213 745.7 429 86.0
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 2.0e-213 745.7 452 84.1
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 3.4e-213 745.0 435 85.5
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 4.5e-213 744.6 435 86.0
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 5.9e-213 744.2 435 85.5
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 7.7e-213 743.8 435 86.0
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 1.3e-212 743.0 432 86.6
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 2.2e-212 742.3 432 86.3
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 2.9e-212 741.9 431 84.9
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 3.8e-212 741.5 435 84.6
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 3.8e-212 741.5 435 85.1
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 3.8e-212 741.5 430 86.0
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 3.8e-212 741.5 435 86.4
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 5.0e-212 741.1 431 86.1
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 6.5e-212 740.7 420 88.6
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 2.5e-211 738.8 435 85.7
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.2e-211 738.4 426 87.3
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 5.5e-211 737.6 442 83.5
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 7.2e-211 737.3 431 85.8
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 9.4e-211 736.9 435 83.7
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 9.4e-211 736.9 435 84.8
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 9.4e-211 736.9 431 85.2
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 1.2e-210 736.5 435 83.7
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 1.6e-210 736.1 432 84.0
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 2.1e-210 735.7 428 86.2
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 2.1e-210 735.7 435 84.6
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 4.7e-210 734.6 429 85.5
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 8.0e-210 733.8 431 84.7
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 1.4e-209 733.0 435 83.4
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 1.4e-209 733.0 432 83.8
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 1.4e-209 733.0 427 85.0
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 1.4e-209 733.0 431 85.4
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 2.3e-209 732.3 432 84.0
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 3.0e-209 731.9 429 84.1
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 3.0e-209 731.9 429 84.1
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 3.9e-209 731.5 432 83.6
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 6.7e-209 730.7 429 83.9
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 6.7e-209 730.7 429 83.9
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 8.8e-209 730.3 431 83.8
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 8.8e-209 730.3 429 84.1
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 8.8e-209 730.3 428 85.0
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 1.5e-208 729.6 432 83.1
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 2.6e-208 728.8 429 83.9
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 3.3e-208 728.4 435 83.0
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 3.3e-208 728.4 435 83.0
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 3.3e-208 728.4 428 84.8
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 4.4e-208 728.0 418 86.6
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 4.4e-208 728.0 428 84.1
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 5.7e-208 727.6 435 84.8
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 5.7e-208 727.6 434 85.3
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 9.7e-208 726.9 425 84.2
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 4.8e-207 724.5 428 82.9
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 4.8e-207 724.5 428 83.6
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 8.2e-207 723.8 435 82.5
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 8.2e-207 723.8 435 85.5
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 1.1e-206 723.4 454 81.7
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 2.4e-206 722.2 428 82.7
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.6e-205 719.5 430 85.6
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 3.5e-205 718.4 431 82.8
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.0e-204 716.8 430 84.9
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 2.2e-204 715.7 431 81.9
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 3.8e-204 714.9 427 82.4
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 4.2e-203 711.4 431 81.2
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 7.2e-203 710.7 427 82.7
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 3.6e-202 708.4 430 84.4
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 6.1e-202 707.6 432 81.5
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 5.2e-201 704.5 434 82.9
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 1.2e-200 703.4 441 81.2
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 2.2e-199 699.1 427 80.1
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 1.1e-198 696.8 413 85.0
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 4.2e-195 684.9 426 79.3
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.4e-192 675.2 386 86.8
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 2.5e-187 659.1 435 77.2
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.8e-182 642.9 436 71.8
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 6.6e-180 634.4 430 73.5
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 1.2e-176 623.6 466 69.7
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.0e-176 622.9 428 71.5
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 4.4e-176 621.7 423 74.5
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.9e-171 606.3 314 99.4
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 7.3e-171 604.4 426 70.4
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 3.1e-169 599.0 432 69.9
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 8.3e-167 590.9 475 68.6
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 3.2e-166 589.0 342 85.1
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 1.0e-164 583.9 422 69.2
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 4.6e-157 558.5 417 69.3
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 3.9e-156 555.4 311 90.4
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 2.5e-118 429.9 265 83.4
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 4.6e-117 425.6 330 68.2
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 3.9e-116 422.5 253 83.4
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 8.7e-116 421.4 252 84.1
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.4e-113 413.3 429 50.3
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 3.1e-113 412.9 233 86.3
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 2.6e-112 409.8 254 80.7
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.3e-90 337.8 405 52.3
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 1.7e-90 337.4 197 85.8
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 3.7e-90 336.3 198 86.4
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 6.3e-90 335.5 182 91.2
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 6.3e-82 308.9 177 84.7
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 2.2e-74 283.9 184 78.3
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 1.1e-70 271.6 214 69.2
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 3.0e-68 263.5 445 39.8
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 2.0e-64 250.8 295 47.1
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 1.0e-63 248.4 217 61.3
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 1.7e-63 247.7 223 61.0
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 9.5e-62 241.9 223 59.2
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 6.1e-61 239.2 245 55.9
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 1.2e-56 224.9 123 88.6
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 3.5e-56 223.4 221 56.1
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.9e-49 201.1 116 85.3
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.2e-43 181.8 95 96.8
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 2.6e-43 180.6 188 55.9
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 4.0e-36 156.8 87 86.2
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 2.9e-34 150.6 150 58.7
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 2.2e-26 124.4 133 45.1
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 2.2e-26 124.4 129 58.9
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 1.1e-22 112.1 67 80.6
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 5.6e-22 109.8 125 52.0
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 1.4e-20 105.1 212 37.7
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 2.4e-20 104.4 70 70.0
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 9.0e-20 102.4 75 69.3
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 8.4e-18 95.9 64 79.7
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 2.1e-16 91.3 57 77.2
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 3.9e-15 87.0 66 68.2
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 4.0e-12 77.0 48 79.2
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 9.0e-12 75.9 204 31.9
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 1.5e-11 75.1 51 76.5
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 2.6e-11 74.3 69 60.9
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 7.6e-11 72.8 46 73.9
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 4.9e-10 70.1 72 61.1
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 3.2e-09 67.4 37 89.2
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 4.6e-08 63.5 58 60.3
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 1.3e-07 62.0 51 68.6
arahy.Tifrunner.gnm1.ann1.E8SK3Y Arachis hypogaea HOM05D004109 ORTHO05D084058 5.7e-06 56.6 34 76.5
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 5.7e-06 56.6 31 80.6


User provided reference genes

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