Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 2.0e-190 669.1 367 100.0
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 3.8e-149 531.9 376 80.9
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 1.8e-143 513.1 376 80.6
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.4e-140 503.4 346 75.4
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 1.6e-139 500.0 373 71.3
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 3.0e-138 495.7 377 70.0
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 8.7e-138 494.2 374 69.8
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 6.2e-136 488.0 376 72.6
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 5.3e-135 485.0 365 70.7
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 9.0e-135 484.2 374 69.8
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 1.3e-133 480.3 377 73.5
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 1.7e-133 479.9 421 66.0
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 1.1e-132 477.2 375 71.5
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.9e-132 476.5 346 76.6
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 7.1e-132 474.6 374 67.9
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 7.1e-132 474.6 374 71.1
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.2e-131 473.8 392 67.6
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 1.2e-131 473.8 381 66.9
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 2.1e-131 473.0 375 68.0
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 2.1e-131 473.0 374 75.4
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 2.7e-131 472.6 353 70.3
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 6.0e-131 471.5 354 77.4
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 6.0e-131 471.5 375 67.7
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 1.3e-130 470.3 376 73.1
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 3.0e-130 469.2 376 76.3
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 3.0e-130 469.2 374 71.1
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 2.5e-129 466.1 375 70.1
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 3.3e-129 465.7 371 69.0
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 4.8e-128 461.8 354 68.4
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 4.8e-128 461.8 372 72.0
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 9.0e-127 457.6 355 68.7
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 9.0e-127 457.6 400 66.8
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 1.2e-126 457.2 379 68.3
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 2.6e-126 456.1 379 68.1
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.6e-126 456.1 375 67.7
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 7.6e-126 454.5 375 73.1
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 7.6e-126 454.5 385 70.4
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.9e-126 454.1 379 67.8
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 9.9e-126 454.1 375 70.7
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.7e-125 453.4 379 67.8
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 2.9e-125 452.6 373 69.2
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 6.4e-125 451.4 374 66.3
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 1.1e-124 450.7 381 69.6
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.9e-124 449.9 352 74.4
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 2.4e-124 449.5 383 70.2
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 3.2e-124 449.1 426 60.3
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 1.0e-122 444.1 382 63.6
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.0e-122 442.6 375 66.1
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 6.7e-122 441.4 390 64.1
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 8.7e-122 441.0 375 65.3
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 1.5e-121 440.3 352 66.5
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 3.3e-121 439.1 353 66.3
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 4.3e-121 438.7 357 65.8
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 5.6e-121 438.3 413 62.7
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 2.1e-120 436.4 376 72.3
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 3.7e-120 435.6 372 70.4
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 1.4e-119 433.7 374 66.8
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 1.8e-119 433.3 423 64.5
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 4.0e-119 432.2 350 69.1
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 5.3e-119 431.8 376 71.8
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 4.5e-118 428.7 361 65.4
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 4.5e-118 428.7 350 71.1
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.5e-118 428.7 387 63.0
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 7.6e-118 427.9 373 68.4
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.0e-117 427.6 360 65.0
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 9.3e-116 421.0 350 68.3
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 7.9e-115 417.9 357 66.1
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 1.3e-114 417.2 357 66.1
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 2.3e-114 416.4 382 63.6
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 8.7e-114 414.5 354 66.1
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 1.9e-113 413.3 442 57.0
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 1.5e-110 403.7 380 62.6
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 4.5e-110 402.1 392 57.7
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.5e-110 402.1 366 61.7
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 7.6e-110 401.4 377 62.3
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 1.1e-108 397.5 372 61.3
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 2.5e-108 396.4 378 63.2
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 9.3e-108 394.4 381 61.7
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 1.6e-107 393.7 375 64.5
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 2.1e-107 393.3 352 62.8
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 2.7e-107 392.9 391 58.6
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 4.6e-107 392.1 355 66.2
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 7.9e-107 391.3 375 64.3
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 1.8e-106 390.2 360 60.6
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 5.1e-106 388.7 354 63.0
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 3.3e-105 386.0 355 65.9
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 4.3e-105 385.6 375 66.9
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 4.3e-105 385.6 375 62.9
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 3.1e-103 379.4 356 61.5
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 2.6e-102 376.3 355 61.4
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 3.4e-102 375.9 376 60.4
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 1.7e-101 373.6 473 53.1
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 2.9e-101 372.9 383 60.8
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 2.9e-101 372.9 378 63.2
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 3.8e-101 372.5 376 59.8
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 1.6e-99 367.1 372 64.8
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 2.7e-99 366.3 361 61.8
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 1.4e-98 364.0 326 66.3
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 3.0e-98 362.8 355 63.1
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 3.9e-98 362.5 375 56.3
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 3.3e-97 359.4 355 60.8
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 2.2e-96 356.7 430 54.4
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 4.8e-96 355.5 386 57.5
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 1.0e-93 347.8 355 56.1
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 1.3e-93 347.4 377 59.2
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.2e-93 346.7 353 58.1
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.9e-93 346.3 359 56.5
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 3.8e-93 345.9 382 57.6
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 3.8e-93 345.9 352 59.9
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 6.5e-93 345.1 377 59.4
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 6.5e-93 345.1 377 59.4
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 1.4e-92 344.0 279 68.8
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 9.4e-92 341.3 380 53.7
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.2e-91 340.9 368 57.3
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 1.6e-91 340.5 375 55.7
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 2.1e-91 340.1 500 48.0
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 9.7e-89 331.3 354 54.5
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 8.2e-88 328.2 285 68.8
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 7.7e-86 321.6 311 62.1
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 3.8e-85 319.3 398 56.0
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 4.2e-84 315.8 361 57.1
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 8.0e-83 311.6 337 55.5
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 1.4e-82 310.8 396 52.0
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 7.5e-81 305.1 354 52.3
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 1.6e-78 297.4 349 53.6
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 7.2e-76 288.5 406 52.0
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 9.4e-76 288.1 297 60.9
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 9.4e-76 288.1 297 60.9
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 4.7e-75 285.8 284 58.8
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 1.0e-74 284.6 396 49.7
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.9e-68 263.8 166 78.3
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 2.8e-67 260.0 271 64.6
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 1.5e-60 237.7 249 57.4
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 3.6e-59 233.0 371 42.6
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.3e-56 224.6 200 59.5
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 4.3e-52 209.5 188 64.9
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 1.1e-50 204.9 312 46.5
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 2.6e-49 200.3 98 93.9
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.9e-47 194.1 99 92.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.9e-47 194.1 99 92.9
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 3.3e-44 183.3 224 50.0
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 2.3e-42 177.2 93 90.3
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 1.3e-40 171.4 185 67.6
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 1.1e-39 168.3 682 28.7
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 4.1e-39 166.4 237 48.9
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 5.4e-39 166.0 219 52.1
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 6.8e-34 149.1 96 79.2
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 1.5e-33 147.9 217 48.4
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 4.3e-28 129.8 71 81.7
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.2e-27 128.3 360 31.7
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.5e-25 121.3 137 52.6
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 2.7e-22 110.5 94 54.3
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 3.5e-22 110.2 65 80.0
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 4.6e-22 109.8 83 55.4
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 1.7e-21 107.8 177 41.2
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 1.5e-17 94.7 71 63.4
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 6.9e-10 69.3 63 57.1
AUR62036780 Chenopodium quinoa HOM05D056044 ORTHO05D137976 2.9e-08 63.9 63 52.4
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 4.2e-07 60.1 74 47.3


User provided reference genes

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