Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030660 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 2.6e-114 415.6 244 100.0
CSS0037917 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 1.7e-97 359.8 244 90.2
Actinidia29020 Actinidia chinensis HOM05D006830 ORTHO05D008119 3.7e-44 182.6 276 48.9
Rhsim05G0232400 Rhododendron simsii HOM05D006830 ORTHO05D008119 9.5e-40 167.9 223 50.2
vmacro20384 Vaccinium macrocarpon HOM05D006830 ORTHO05D008119 2.7e-34 149.8 219 49.3
CSS0029082 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 2.3e-33 146.7 261 43.3
Dinv16956 Davidia involucrata HOM05D006830 ORTHO05D008119 2.1e-31 140.2 264 46.6
Hma1.2p1_0537F.1_g174220 Hydrangea macrophylla HOM05D006830 ORTHO05D008119 2.1e-31 140.2 284 40.1
GSVIVG01025871001 Vitis vinifera HOM05D006830 ORTHO05D008119 5.8e-29 132.1 260 40.8
Lj2A57T75 Lonicera japonica HOM05D006830 ORTHO05D008119 9.8e-29 131.3 232 44.4
TAR636G3618 Trochodendron aralioides HOM05D006830 ORTHO05D008119 3.1e-22 109.8 265 38.5
MD12G1191100 Malus domestica HOM05D006830 ORTHO05D008119 4.0e-22 109.4 209 41.1
Prupe.6G296200 Prunus persica HOM05D006830 ORTHO05D008119 5.2e-22 109.0 260 35.4
Haze_21197 Corylus avellana HOM05D006830 ORTHO05D008119 1.5e-21 107.5 212 40.6
Actinidia11494 Actinidia chinensis HOM05D040087 ORTHO05D008119 4.4e-21 105.9 91 71.4
Manes.08G169600 Manihot esculenta HOM05D006830 ORTHO05D008119 4.4e-21 105.9 264 35.6
PGR031G0539 Punica granatum HOM05D006830 ORTHO05D008119 4.4e-21 105.9 263 36.9
QL07p031724 Quercus lobata HOM05D006830 ORTHO05D008119 1.3e-20 104.4 259 35.5
TWI77G0580 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 1.3e-20 104.4 256 35.9
Cfa017009 Carpinus fangiana HOM05D006830 ORTHO05D008119 2.2e-20 103.6 212 39.6
Potri.016G139000 Populus trichocarpa HOM05D006830 ORTHO05D008119 6.4e-20 102.1 259 35.9
Thecc.04G149300 Theobroma cacao HOM05D006830 ORTHO05D008119 5.4e-19 99.0 151 45.7
Lj1g0026994 Lotus japonicus HOM05D006830 ORTHO05D008119 9.2e-19 98.2 210 38.6
Nn5g26811 Nelumbo nucifera HOM05D006830 ORTHO05D008119 9.2e-19 98.2 261 35.6
MBI15_g32284_MAGBIO Magnolia biondii HOM05D006830 ORTHO05D008119 2.1e-18 97.1 242 36.8
Cpa.g.sc72.63 Carica papaya HOM05D006830 ORTHO05D008119 1.7e-17 94.0 250 34.8
Nitab4.5_0000048g0180 Nicotiana tabacum HOM05D006830 ORTHO05D008119 2.3e-17 93.6 261 32.2
TWI74G0093 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 2.3e-17 93.6 257 35.0
Nitab4.5_0001876g0080 Nicotiana tabacum HOM05D006830 ORTHO05D008119 5.1e-17 92.4 209 34.0
RcHm_v2.0_Chr3g0460131 Rosa chinensis HOM05D006830 ORTHO05D008119 5.1e-17 92.4 259 32.0
Oeu030099.2 Olea europaea HOM05D006830 ORTHO05D008119 6.6e-17 92.0 260 35.8
Potri.006G110400 Populus trichocarpa HOM05D006830 ORTHO05D008119 1.1e-16 91.3 155 39.4
Eucgr.A00784 Eucalyptus grandis HOM05D006830 ORTHO05D008119 1.9e-16 90.5 260 32.3
arahy.Tifrunner.gnm1.ann1.E2XN58 Arachis hypogaea HOM05D006830 ORTHO05D008119 7.3e-16 88.6 226 34.5
Sabra04G0154900 Salix brachista HOM05D006830 ORTHO05D008119 1.2e-15 87.8 209 38.8
Sc20g0007150 Simmondsia chinensis HOM05D006830 ORTHO05D008119 2.3e-14 83.6 261 31.0
arahy.Tifrunner.gnm1.ann1.QV5EPW Arachis hypogaea HOM05D006830 ORTHO05D008119 4.0e-14 82.8 226 34.1
Ciclev10011645m.g Citrus clementina HOM05D006830 ORTHO05D008119 4.0e-14 82.8 233 33.0
FvH4_6g09531 Fragaria vesca HOM05D006830 ORTHO05D008119 2.0e-13 80.5 254 31.1
FAN14G4211 Fragaria x ananassa HOM05D006830 ORTHO05D008119 2.0e-13 80.5 254 31.1
FAN09G0658 Fragaria x ananassa HOM05D006830 ORTHO05D008119 2.6e-13 80.1 239 32.2
Atru.chr8.80 Acer truncatum HOM05D006830 ORTHO05D008119 4.4e-13 79.3 229 34.5
FAN05G1111 Fragaria x ananassa HOM05D006830 ORTHO05D008119 1.3e-12 77.8 239 31.8
Peaxi162Scf00732g00253 Petunia axillaris HOM05D006830 ORTHO05D008119 2.9e-12 76.6 244 29.9
Solyc09g016940.4 Solanum lycopersicum HOM05D006830 ORTHO05D008119 3.7e-12 76.3 209 30.6
SGA_v2.0_scaffold85G26596 Striga asiatica HOM05D006830 ORTHO05D008119 6.4e-12 75.5 123 44.7
Sopen09g010200 Solanum pennellii HOM05D006830 ORTHO05D008119 1.1e-11 74.7 209 30.1
COL.COLO4_21252 Corchorus olitorius HOM05D006830 ORTHO05D008119 1.4e-11 74.3 196 33.7
FAN02G1118 Fragaria x ananassa HOM05D006830 ORTHO05D008119 2.4e-11 73.6 236 32.2
Medtr7g073700 Medicago truncatula HOM05D006830 ORTHO05D008119 5.4e-11 72.4 262 32.8
MELO3C009096.2 Cucumis melo HOM05D006830 ORTHO05D008119 9.2e-11 71.6 248 31.5
Oeu026939.4 Olea europaea HOM05D006830 ORTHO05D008119 9.2e-11 71.6 290 32.1
Gorai.006G236000 Gossypium raimondii HOM05D006830 ORTHO05D008119 1.6e-10 70.9 207 32.4
AUR62029792 Chenopodium quinoa HOM05D006830 ORTHO05D008119 2.7e-10 70.1 261 28.0
AUR62006437 Chenopodium quinoa HOM05D006830 ORTHO05D008119 3.5e-10 69.7 262 29.0
MSTRG.18932 Avicennia marina HOM05D006830 ORTHO05D008119 6.0e-10 68.9 89 49.4
Duzib268G1795 Durio zibethinus HOM05D006830 ORTHO05D008119 1.7e-09 67.4 179 31.3
Gohir.D09G215500 Gossypium hirsutum HOM05D006830 ORTHO05D008119 1.7e-09 67.4 90 46.7
Thhalv10016585m.g Eutrema salsugineum HOM05D006830 ORTHO05D008119 2.3e-09 67.0 88 48.9
EL10Ac7g17129 Beta vulgaris HOM05D006830 ORTHO05D008119 5.1e-09 65.9 261 30.7
Carub.0004s2057 Capsella rubella HOM05D006830 ORTHO05D008119 1.1e-08 64.7 97 45.4
DCAR_023967 Daucus carota HOM05D006830 ORTHO05D008119 1.9e-08 63.9 124 41.9
CsaV3_3G032990 Cucumis sativus L. HOM05D006830 ORTHO05D008119 3.3e-08 63.2 246 31.7
BcaC01g05528 Brassica carinata HOM05D006830 ORTHO05D008119 7.3e-08 62.0 119 38.7
A03p21400 Brassica napus HOM05D006830 ORTHO05D008119 7.3e-08 62.0 88 45.5
C03p25270 Brassica napus HOM05D006830 ORTHO05D008119 7.3e-08 62.0 88 45.5
BolC3t14921H Brassica oleracea HOM05D006830 ORTHO05D008119 7.3e-08 62.0 88 45.5
Glyma.09G273000 Glycine max HOM05D006830 ORTHO05D008119 7.3e-08 62.0 249 28.9
Migut.J00020 Erythranthe guttata HOM05D006830 ORTHO05D008119 1.2e-07 61.2 256 26.6
Ah.08g209170 Amaranthus hybridus HOM05D006830 ORTHO05D008119 1.6e-07 60.8 239 29.7
BraA03t11375Z Brassica rapa HOM05D006830 ORTHO05D008119 1.6e-07 60.8 88 44.3
Glyma.18G216100 Glycine max HOM05D006830 ORTHO05D008119 1.6e-07 60.8 223 29.1
THA.LOC104806205 Tarenaya hassleriana HOM05D006830 ORTHO05D008119 2.1e-07 60.5 114 37.7
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 2.8e-07 60.1 263 27.0
Hund19745 Selenicereus undatus HOM05D006830 ORTHO05D008119 3.6e-07 59.7 269 29.4
Lalb_Chr01g0023901 Lupinus albus HOM05D006830 ORTHO05D008119 6.2e-07 58.9 216 29.2
Sp4g20920 Schrenkiella parvula HOM05D006830 ORTHO05D008119 6.2e-07 58.9 87 44.8
ECA248G1589 Erigeron canadensis HOM05D006830 ORTHO05D008119 8.1e-07 58.5 99 39.4
Gohir.A09G213672 Gossypium hirsutum HOM05D006830 ORTHO05D008119 1.8e-06 57.4 74 47.3
ClCG10G022820 Citrullus lanatus HOM05D006830 ORTHO05D008119 8.9e-06 55.1 78 46.2


User provided reference genes

Program Settings