Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 2212.6 1123 100.0
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1801.6 1118 81.6
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1760.7 1122 79.1
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1685.6 1155 77.0
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1671.0 1128 74.9
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1634.4 1124 75.3
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1631.7 1115 72.7
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1623.6 1118 73.0
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1612.8 1115 71.8
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1592.0 1123 71.0
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1558.5 1174 67.4
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1545.0 1115 69.7
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1543.1 1120 69.1
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1540.4 1118 69.1
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1530.4 1119 68.5
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1529.2 1118 69.1
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1529.2 1136 68.7
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1518.8 1114 68.0
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1516.1 1119 68.6
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1515.0 1150 66.6
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1510.7 1118 68.1
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1506.1 1140 67.5
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1505.7 1125 67.9
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1502.3 1116 67.7
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1499.2 1118 67.2
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1484.2 1120 67.9
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1481.5 1117 65.8
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1481.1 1117 67.9
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1479.9 1115 67.0
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1476.8 1117 67.2
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1476.8 1128 66.4
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1475.7 1117 67.8
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1473.4 1116 66.9
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1471.8 1115 66.7
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1464.5 931 78.7
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1464.5 1118 66.0
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1462.6 1118 65.2
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1459.5 1185 63.5
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1458.0 1101 66.3
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1456.4 1119 65.1
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1454.9 1120 68.2
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1453.3 1113 65.9
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1453.3 1117 66.2
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1452.2 1123 65.5
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1450.6 1119 65.1
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1444.9 1114 66.2
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1444.9 1119 66.1
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1443.7 1118 64.8
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1443.3 1069 68.8
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1440.6 1117 65.2
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1425.6 1116 65.1
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1422.9 1124 65.6
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1419.1 1118 64.1
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1418.3 1117 64.2
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1417.5 1117 64.1
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1415.2 1117 64.1
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1414.4 1145 62.4
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1414.1 1121 63.6
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1412.5 1117 64.1
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1409.8 1156 63.8
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1408.7 1119 64.2
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1407.9 1145 62.2
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1406.3 1121 63.5
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1402.9 1117 63.6
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1401.0 1119 63.8
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1400.2 1112 63.7
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1397.9 1172 61.1
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1390.2 1110 64.8
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1389.0 1137 64.1
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1382.5 1188 60.9
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1378.2 1204 60.5
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1377.8 1120 63.6
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1370.5 1094 63.9
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1368.2 1094 63.8
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1350.5 951 71.2
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1350.1 1094 63.2
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1346.3 958 70.9
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1339.3 1111 62.0
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1338.9 1112 62.2
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1335.9 1120 62.1
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1335.9 1120 62.1
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1334.7 1121 61.7
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1332.8 1116 61.9
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1332.8 1109 62.0
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1328.5 1112 62.5
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1325.1 1111 61.3
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1321.6 1101 62.0
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1305.8 1102 61.7
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1305.0 1006 67.2
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1305.0 1015 65.1
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1292.3 1114 60.5
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1291.2 1022 64.8
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1290.0 1161 59.0
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1279.2 1111 59.9
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1278.5 1116 59.9
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1274.2 1148 58.5
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1274.2 1116 59.3
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1265.4 1119 59.4
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1256.1 1126 58.7
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1256.1 960 67.1
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1251.5 1124 58.1
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1247.3 793 78.1
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1227.2 956 66.9
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 0.0e+00 1182.9 1088 57.4
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1182.9 901 66.3
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1176.8 841 69.1
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 0.0e+00 1105.9 1149 51.4
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1103.6 752 71.5
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.8e-298 1029.6 1025 54.3
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 1.2e-291 1006.9 799 64.7
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.2e-283 980.3 641 73.0
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.6e-278 962.6 1136 46.4
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 4.8e-272 941.8 1015 49.7
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.5e-265 920.2 1149 44.4
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 1.5e-257 893.6 1086 45.5
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 3.1e-255 885.9 822 56.9
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.2e-198 698.0 980 41.3
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 2.2e-192 677.2 1088 40.8
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 2.9e-176 623.6 383 79.1
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 5.3e-170 602.8 1109 38.1
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 3.7e-155 553.5 463 59.0
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 7.4e-148 529.3 507 56.2
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 7.2e-127 459.5 369 60.2
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 5.6e-111 406.8 324 63.0
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 6.4e-99 366.7 1144 26.5
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 2.1e-97 361.7 527 43.1
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 4.9e-91 340.5 260 70.8
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.9e-90 338.6 231 75.8
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.0e-89 333.6 260 69.6
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.4e-85 322.4 378 50.5
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.4e-82 311.6 214 76.6
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.3e-80 305.1 228 71.9
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.9e-79 302.0 346 49.4
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.6e-78 298.9 203 72.9
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 3.8e-67 261.2 212 66.0
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 7.1e-66 256.9 175 77.7
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 8.7e-64 250.0 245 59.2
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.4e-61 241.9 318 51.9
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.4e-61 241.9 318 51.9
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.0e-60 238.8 318 51.6
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.3e-59 236.1 318 51.3
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.7e-51 209.1 313 49.2
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 2.7e-49 201.8 427 33.3
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.1e-45 189.9 143 65.7
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 4.7e-33 147.9 258 39.9
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 8.0e-33 147.1 258 39.9
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.8e-32 146.0 358 29.6
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 1.1e-31 143.3 258 39.1
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 2.5e-26 125.6 92 66.3
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 1.5e-23 116.3 131 50.4
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.4e-23 114.8 241 33.6
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 4.4e-23 114.8 103 58.3
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 2.2e-22 112.5 300 30.7
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.0e-19 103.6 80 60.0
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 5.0e-19 101.3 58 72.4
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.2e-18 98.2 73 64.4
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 8.8e-16 90.5 55 78.2


User provided reference genes

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