Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030634 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 1.3e-45 186.0 92 100.0
CSS0000986 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 8.5e-34 146.7 106 77.4
Dinv38499 Davidia involucrata HOM05D007328 ORTHO05D009246 4.8e-29 131.0 106 68.9
Rhsim12G0170200 Rhododendron simsii HOM05D007328 ORTHO05D009246 2.0e-27 125.6 96 70.8
Sc04g0001180 Simmondsia chinensis HOM05D007328 ORTHO05D009246 7.7e-27 123.6 106 66.0
CiPaw.12G033600 Carya illinoinensis HOM05D007328 ORTHO05D009246 1.1e-25 119.8 96 65.6
RcHm_v2.0_Chr7g0191941 Rosa chinensis HOM05D007328 ORTHO05D009246 4.2e-25 117.9 104 61.5
Haze_07631 Corylus avellana HOM05D007328 ORTHO05D009246 1.2e-24 116.3 97 66.0
Hma1.2p1_2431F.1_g322030 Hydrangea macrophylla HOM05D007328 ORTHO05D009246 1.2e-24 116.3 100 65.0
TAR629G2292 Trochodendron aralioides HOM05D007328 ORTHO05D009246 1.2e-24 116.3 106 63.2
GSVIVG01007592001 Vitis vinifera HOM05D007328 ORTHO05D009246 4.7e-24 114.4 96 66.7
QL10p005926 Quercus lobata HOM05D007328 ORTHO05D009246 6.1e-24 114.0 105 59.0
PSO063G4259 Papaver somniferum HOM05D007328 ORTHO05D009246 1.0e-23 113.2 96 62.5
Ciclev10022963m.g Citrus clementina HOM05D007328 ORTHO05D009246 1.8e-23 112.5 101 64.4
FAN18G0524 Fragaria x ananassa HOM05D007328 ORTHO05D009246 1.8e-23 112.5 108 62.0
PSO067G0004 Papaver somniferum HOM05D007328 ORTHO05D009246 1.8e-23 112.5 96 62.5
Nitab4.5_0003542g0010 Nicotiana tabacum HOM05D007328 ORTHO05D009246 2.3e-23 112.1 100 61.0
Prupe.5G161600 Prunus persica HOM05D007328 ORTHO05D009246 2.3e-23 112.1 106 59.4
CANSAT80G1532 Cannabis sativa HOM05D007328 ORTHO05D009246 3.0e-23 111.7 96 62.5
DCAR_007459 Daucus carota HOM05D007328 ORTHO05D009246 4.0e-23 111.3 106 59.4
FAN13G1360 Fragaria x ananassa HOM05D007328 ORTHO05D009246 4.0e-23 111.3 108 61.1
CAN.G126.95 Capsicum annuum HOM05D007328 ORTHO05D009246 6.8e-23 110.5 96 63.5
FvH4_5g06690 Fragaria vesca HOM05D007328 ORTHO05D009246 6.8e-23 110.5 108 61.1
FAN04G3262 Fragaria x ananassa HOM05D007328 ORTHO05D009246 1.2e-22 109.8 108 61.1
Nitab4.5_0000510g0070 Nicotiana tabacum HOM05D007328 ORTHO05D009246 1.2e-22 109.8 100 60.0
Ah.08g218420 Amaranthus hybridus HOM05D007328 ORTHO05D009246 1.5e-22 109.4 107 55.1
ClCG06G017550 Citrullus lanatus HOM05D007328 ORTHO05D009246 2.0e-22 109.0 96 61.5
Sed0026647 Sechium edule HOM05D007328 ORTHO05D009246 2.0e-22 109.0 101 57.4
PGSC0003DMG400015227 Solanum tuberosum HOM05D007328 ORTHO05D009246 2.0e-22 109.0 105 59.0
Duzib205G1420 Durio zibethinus HOM05D007328 ORTHO05D009246 2.6e-22 108.6 109 56.9
Lsat_1_v5_gn_5_12821 Lactuca sativa HOM05D007328 ORTHO05D009246 2.6e-22 108.6 106 59.4
Solyc03g111790.4 Solanum lycopersicum HOM05D007328 ORTHO05D009246 4.4e-22 107.8 105 58.1
Sopen03g030890 Solanum pennellii HOM05D007328 ORTHO05D009246 4.4e-22 107.8 105 58.1
Lsat_1_v5_gn_3_90700 Lactuca sativa HOM05D007328 ORTHO05D009246 7.5e-22 107.1 106 59.4
PGR044G2544 Punica granatum HOM05D007328 ORTHO05D009246 1.3e-21 106.3 97 62.9
Aqoxy5G03651 Aquilegia oxysepala HOM05D007328 ORTHO05D009246 1.7e-21 105.9 96 60.4
Thecc.03G118600 Theobroma cacao HOM05D007328 ORTHO05D009246 4.8e-21 104.4 109 56.0
TWI23G0848 Tripterygium wilfordii HOM05D007328 ORTHO05D009246 8.3e-21 103.6 96 61.5
ECA246G4123 Erigeron canadensis HOM05D007328 ORTHO05D009246 1.1e-20 103.2 106 57.5
arahy.Tifrunner.gnm1.ann1.RLPB8M Arachis hypogaea HOM05D007328 ORTHO05D009246 1.8e-20 102.4 99 59.6
CsaV3_1G000900 Cucumis sativus L. HOM05D007328 ORTHO05D009246 1.8e-20 102.4 99 58.6
Gohir.A12G186600 Gossypium hirsutum HOM05D007328 ORTHO05D009246 1.8e-20 102.4 109 55.0
Cc04_g10870 Coffea canephora HOM05D007328 ORTHO05D009246 2.4e-20 102.1 106 56.6
MELO3C026242.2 Cucumis melo HOM05D007328 ORTHO05D009246 2.4e-20 102.1 99 59.6
Hund05612 Selenicereus undatus HOM05D007328 ORTHO05D009246 3.1e-20 101.7 108 51.9
COL.COLO4_19806 Corchorus olitorius HOM05D007328 ORTHO05D009246 4.1e-20 101.3 110 55.5
Gohir.D12G189600 Gossypium hirsutum HOM05D007328 ORTHO05D009246 4.1e-20 101.3 109 54.1
Gorai.008G203400 Gossypium raimondii HOM05D007328 ORTHO05D009246 4.1e-20 101.3 109 54.1
Gorai.006G269700 Gossypium raimondii HOM05D007328 ORTHO05D009246 9.1e-20 100.1 109 53.2
Duzib068G0271 Durio zibethinus HOM05D007328 ORTHO05D009246 1.2e-19 99.8 96 58.3
Gohir.D09G245301 Gossypium hirsutum HOM05D007328 ORTHO05D009246 1.6e-19 99.4 109 53.2
arahy.Tifrunner.gnm1.ann1.VT7US1 Arachis hypogaea HOM05D007328 ORTHO05D009246 2.7e-19 98.6 95 61.1
THA.LOC104809276 Tarenaya hassleriana HOM05D007328 ORTHO05D009246 2.7e-19 98.6 96 57.3
HanXRQChr08g0235201 Helianthus annuus HOM05D007328 ORTHO05D009246 3.5e-19 98.2 102 58.8
Gohir.A09G244400 Gossypium hirsutum HOM05D007328 ORTHO05D009246 7.7e-19 97.1 98 56.1
MSTRG.4340 Avicennia marina HOM05D007328 ORTHO05D009246 1.0e-18 96.7 105 58.1
FAN08G2248 Fragaria x ananassa HOM05D007328 ORTHO05D009246 1.7e-18 95.9 125 50.4
SGA_v2.0_scaffold7G04170 Striga asiatica HOM05D007328 ORTHO05D009246 2.2e-18 95.5 106 55.7
Migut.D02033 Erythranthe guttata HOM05D007328 ORTHO05D009246 3.8e-18 94.7 106 56.6
AT1G78790 Arabidopsis thaliana HOM05D007328 ORTHO05D009246 6.5e-18 94.0 96 55.2
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 6.5e-18 94.0 96 55.2
Carub.0002s1493 Capsella rubella HOM05D007328 ORTHO05D009246 6.5e-18 94.0 96 55.2
Sp5g33820 Schrenkiella parvula HOM05D007328 ORTHO05D009246 6.5e-18 94.0 96 55.2
AL2G39190 Arabidopsis lyrata HOM05D007328 ORTHO05D009246 8.5e-18 93.6 96 55.2
Ca_19431_v3 Cicer arietinum L. HOM05D007328 ORTHO05D009246 8.5e-18 93.6 99 52.5
CARHR072340 Cardamine hirsuta HOM05D007328 ORTHO05D009246 1.1e-17 93.2 96 55.2
BcaC08g47455 Brassica carinata HOM05D007328 ORTHO05D009246 1.9e-17 92.4 96 54.2
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 1.9e-17 92.4 96 54.2
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.9e-17 92.4 96 54.2
BraA07t31907Z Brassica rapa HOM05D007328 ORTHO05D009246 1.9e-17 92.4 96 54.2
Glyma.05G043400 Glycine max HOM05D007328 ORTHO05D009246 2.5e-17 92.0 99 51.5
Lj4g0027684 Lotus japonicus HOM05D007328 ORTHO05D009246 4.2e-17 91.3 96 55.2
Potri.012G090600 Populus trichocarpa HOM05D007328 ORTHO05D009246 4.2e-17 91.3 96 56.2
Lalb_Chr07g0183141 Lupinus albus HOM05D007328 ORTHO05D009246 7.2e-17 90.5 99 52.5
SalBow6G3374 Salvia bowleyana HOM05D007328 ORTHO05D009246 7.2e-17 90.5 96 56.2
Glyma.17G125900 Glycine max HOM05D007328 ORTHO05D009246 2.1e-16 89.0 101 48.5
HPP92_017655 Vanilla planifolia HOM05D007328 ORTHO05D009246 2.1e-16 89.0 96 57.3
Phvul.003G206900 Phaseolus vulgaris HOM05D007328 ORTHO05D009246 4.0e-15 84.7 96 51.0
Medtr4g104430 Medicago truncatula HOM05D007328 ORTHO05D009246 1.5e-14 82.8 96 50.0
Os04g0481500 Oryza sativa ssp. japonica HOM05D007328 ORTHO05D009246 5.7e-14 80.9 98 51.0
SHI17354 Sapria himalayana HOM05D007328 ORTHO05D009246 5.7e-14 80.9 105 49.5
vmacro16689 Vaccinium macrocarpon HOM05D007328 ORTHO05D009246 7.5e-14 80.5 67 67.2
Pp3c15_7370 Physcomitrium patens HOM05D007328 ORTHO05D009246 2.8e-13 78.6 98 51.0
TPR.G37571 Trifolium pratense HOM05D007328 ORTHO05D009246 4.9e-13 77.8 98 48.0
AagrBONN_evm.TU.Sc2ySwM_369.482 Anthoceros agrestis HOM05D007328 ORTHO05D009246 1.8e-12 75.9 109 46.8
unitig_62.g23226 Utricularia gibba HOM05D007328 ORTHO05D009246 2.4e-12 75.5 102 47.1
Psat4g062040 Pisum sativum HOM05D007328 ORTHO05D009246 5.4e-12 74.3 89 48.3
Sabra12G0065400 Salix brachista HOM05D007328 ORTHO05D009246 7.0e-12 73.9 79 57.0
CDE02G4603 Ceratophyllum demersum HOM05D007328 ORTHO05D009246 9.2e-12 73.6 117 44.4
Manes.06G112300 Manihot esculenta HOM05D007328 ORTHO05D009246 9.2e-12 73.6 67 64.2
CSS0039715 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 1.6e-11 72.8 82 52.4
Aa31LG4G2240 Aethionema arabicum HOM05D007328 ORTHO05D009246 5.9e-11 70.9 67 62.7
QL10p005934 Quercus lobata HOM05D007328 ORTHO05D009246 2.3e-10 68.9 64 60.9
C03p92780 Brassica napus HOM05D007328 ORTHO05D009246 2.9e-10 68.6 106 42.5
Nn3g16640 Nelumbo nucifera HOM05D007328 ORTHO05D009246 2.9e-10 68.6 52 65.4
Actinidia08840 Actinidia chinensis HOM05D007328 ORTHO05D009246 5.0e-10 67.8 39 84.6
ATR0199G045 Amborella trichopoda HOM05D007328 ORTHO05D009246 5.0e-10 67.8 39 87.2
Ca_30674_v3 Cicer arietinum L. HOM05D007328 ORTHO05D009246 5.0e-10 67.8 67 59.7
BolC6t40286H Brassica oleracea HOM05D007328 ORTHO05D009246 6.6e-10 67.4 78 51.3
Atru.chr9.1808 Acer truncatum HOM05D007328 ORTHO05D009246 1.1e-09 66.6 39 87.2
AUR62001234 Chenopodium quinoa HOM05D007328 ORTHO05D009246 1.5e-09 66.2 39 79.5
MBI10_g15972_MAGBIO Magnolia biondii HOM05D007328 ORTHO05D009246 3.3e-09 65.1 39 87.2
SEGI_23865 Sequoiadendron giganteum HOM05D007328 ORTHO05D009246 4.3e-09 64.7 65 61.5
Thhalv10019789m.g Eutrema salsugineum HOM05D007328 ORTHO05D009246 5.6e-09 64.3 38 86.8
Mapoly0166s0013 Marchantia polymorpha HOM05D007328 ORTHO05D009246 2.8e-08 62.0 86 48.8
ECA233G5563 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.1e-08 60.8 82 47.6
SMO203G0244 Selaginella moellendorffii HOM05D007328 ORTHO05D009246 7.5e-06 53.9 39 69.2


User provided reference genes

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