Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.9e-113 412.5 205 100.0
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 2.5e-62 242.7 194 69.1
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 4.3e-54 215.3 201 60.7
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 7.4e-54 214.5 200 62.5
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 4.8e-53 211.8 194 60.8
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.2e-50 203.0 194 59.8
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 1.5e-43 180.3 191 57.6
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 5.9e-43 178.3 202 54.5
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 1.0e-42 177.6 201 53.7
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 3.1e-36 156.0 202 51.0
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.2e-35 154.1 195 50.3
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 2.6e-35 152.9 199 45.7
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.7e-34 150.2 195 46.7
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.2e-34 149.8 201 46.3
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.2e-34 149.8 195 46.7
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 3.8e-34 149.1 200 47.0
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.5e-33 147.1 194 49.0
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 4.2e-33 145.6 207 46.9
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 4.2e-33 145.6 192 47.9
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 4.2e-33 145.6 208 48.1
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 5.5e-33 145.2 196 48.5
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 7.2e-33 144.8 195 44.1
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 9.4e-33 144.4 201 45.3
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 9.4e-33 144.4 205 45.9
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 6.1e-32 141.7 186 52.2
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 8.0e-32 141.4 186 45.2
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.8e-31 140.2 196 46.9
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 2.3e-31 139.8 192 46.4
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 2.3e-31 139.8 206 44.2
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 2.3e-31 139.8 194 47.4
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 4.0e-31 139.0 188 45.7
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 1.5e-30 137.1 187 48.1
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 7.5e-30 134.8 187 47.1
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.7e-29 133.7 189 44.4
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.8e-29 132.9 195 47.2
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 4.8e-29 132.1 200 44.0
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 8.2e-29 131.3 196 41.8
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.1e-28 131.0 192 45.3
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 1.4e-28 130.6 225 38.7
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.4e-28 130.6 201 41.8
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.4e-28 130.6 201 41.8
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.4e-28 130.6 201 41.8
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.8e-28 130.2 192 39.1
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.8e-28 130.2 196 42.3
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 2.4e-28 129.8 192 43.8
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 2.4e-28 129.8 162 46.9
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 3.1e-28 129.4 197 45.2
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 4.1e-28 129.0 202 43.1
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 4.1e-28 129.0 194 41.8
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 7.0e-28 128.3 193 45.1
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 9.1e-28 127.9 197 42.1
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 9.1e-28 127.9 193 43.0
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 1.6e-27 127.1 200 39.0
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 2.7e-27 126.3 200 43.5
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 3.5e-27 125.9 156 48.1
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 4.5e-27 125.6 192 44.3
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 5.9e-27 125.2 184 45.7
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 7.7e-27 124.8 151 43.7
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 7.7e-27 124.8 193 44.0
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 7.7e-27 124.8 173 44.5
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 1.0e-26 124.4 202 40.1
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.3e-26 124.0 193 44.6
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.3e-26 124.0 193 44.6
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.3e-26 124.0 193 44.6
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.3e-26 124.0 200 43.5
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 1.3e-26 124.0 187 42.8
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 1.7e-26 123.6 193 44.0
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.9e-26 122.9 195 43.1
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 2.9e-26 122.9 193 42.0
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 3.8e-26 122.5 186 43.0
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 5.0e-26 122.1 144 50.7
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 6.5e-26 121.7 197 42.6
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 6.5e-26 121.7 197 42.1
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 8.5e-26 121.3 197 40.6
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 1.5e-25 120.6 200 38.0
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 1.5e-25 120.6 186 44.6
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.9e-25 120.2 187 43.3
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.5e-25 119.8 198 40.4
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 2.5e-25 119.8 193 43.5
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 3.2e-25 119.4 200 42.5
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 4.2e-25 119.0 202 41.6
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 5.5e-25 118.6 189 44.4
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 5.5e-25 118.6 181 42.0
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 1.2e-24 117.5 185 41.6
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 1.6e-24 117.1 198 38.4
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 1.6e-24 117.1 213 38.5
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 2.1e-24 116.7 199 41.7
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 2.7e-24 116.3 208 39.9
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 6.1e-24 115.2 197 38.6
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 6.1e-24 115.2 200 41.0
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 8.0e-24 114.8 201 39.8
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 3.0e-23 112.8 174 46.0
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 3.0e-23 112.8 188 41.0
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 4.0e-23 112.5 171 44.4
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 6.8e-23 111.7 170 38.2
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 6.8e-23 111.7 194 40.7
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 6.8e-23 111.7 163 46.0
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 8.8e-23 111.3 149 39.6
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 8.8e-23 111.3 186 42.5
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 8.8e-23 111.3 198 36.4
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 1.2e-22 110.9 207 38.2
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 2.0e-22 110.2 186 42.5
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 3.4e-22 109.4 194 38.7
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 9.8e-22 107.8 204 37.3
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 9.8e-22 107.8 194 38.1
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 1.3e-21 107.5 167 43.1
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 3.7e-21 105.9 209 39.2
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 3.7e-21 105.9 188 39.9
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 4.8e-21 105.5 149 38.3
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 6.3e-21 105.1 116 50.9
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 8.3e-21 104.8 148 44.6
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 1.1e-20 104.4 202 40.1
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 2.4e-20 103.2 145 42.1
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 5.4e-20 102.1 194 38.7
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 5.4e-20 102.1 202 38.6
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 7.0e-20 101.7 204 38.7
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 1.6e-19 100.5 203 38.9
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.6e-19 100.5 183 36.1
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 2.0e-19 100.1 190 38.9
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 1.0e-18 97.8 188 38.8
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 1.0e-18 97.8 167 41.9
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 1.3e-18 97.4 202 33.7
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 1.3e-18 97.4 167 41.3
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 2.9e-18 96.3 194 39.7
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 3.8e-18 95.9 199 36.7
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 5.0e-18 95.5 194 39.7
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 5.0e-18 95.5 190 38.9
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 5.0e-18 95.5 194 39.7
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 6.5e-18 95.1 189 39.7
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 1.1e-17 94.4 193 39.4
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 1.9e-17 93.6 189 39.2
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 2.5e-17 93.2 173 41.0
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 1.6e-16 90.5 187 38.0
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 3.6e-16 89.4 185 37.3
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 6.1e-16 88.6 199 35.2
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.0e-15 87.8 170 32.4
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 1.0e-15 87.8 158 36.7
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 3.0e-15 86.3 194 36.6
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.0e-15 86.3 170 33.5
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 8.8e-15 84.7 79 62.0
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 1.2e-14 84.3 204 36.8
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.2e-14 84.3 170 32.4
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 2.0e-14 83.6 109 47.7
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 4.4e-14 82.4 109 50.5
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 1.7e-13 80.5 79 57.0
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 1.8e-12 77.0 181 34.8
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 4.1e-12 75.9 188 30.3
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 4.5e-11 72.4 157 38.9
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 7.8e-11 71.6 185 30.3
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 2.3e-10 70.1 188 33.5
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 2.9e-10 69.7 185 30.8
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 4.3e-09 65.9 189 31.2
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 1.5e-06 57.4 209 30.1


User provided reference genes

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