Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 2.5e-170 602.1 313 100.0
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 6.7e-131 471.1 302 83.4
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 4.3e-130 468.4 307 81.8
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 2.9e-118 429.1 312 75.3
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.8e-115 417.5 307 73.0
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 2.2e-113 412.9 266 83.5
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 5.5e-109 398.3 310 70.3
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 6.7e-107 391.3 301 70.8
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 8.8e-107 391.0 303 72.9
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 2.6e-106 389.4 306 69.3
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 6.3e-105 384.8 303 69.3
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 2.7e-103 379.4 310 67.7
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 4.5e-103 378.6 224 87.9
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 5.9e-103 378.3 309 69.6
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 2.2e-102 376.3 308 67.5
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 8.5e-102 374.4 307 68.4
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.5e-101 373.6 280 72.1
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 1.9e-101 373.2 307 67.8
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 4.2e-101 372.1 305 68.2
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 1.2e-100 370.5 302 69.5
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 3.6e-100 369.0 315 68.3
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 6.1e-100 368.2 303 68.6
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 8.0e-100 367.9 230 83.5
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 1.0e-99 367.5 250 78.0
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 3.0e-99 365.9 313 66.5
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 6.8e-99 364.8 273 72.5
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 8.8e-99 364.4 224 83.9
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 1.5e-98 363.6 303 66.0
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 2.0e-98 363.2 224 83.5
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 3.4e-98 362.5 222 83.8
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 4.4e-98 362.1 248 77.4
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 4.4e-98 362.1 308 66.2
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 4.4e-98 362.1 224 82.6
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 1.3e-97 360.5 230 81.7
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 1.7e-97 360.1 229 81.7
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 3.7e-97 359.0 211 87.7
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 4.8e-97 358.6 305 66.6
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.8e-97 358.6 225 83.1
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 8.3e-97 357.8 225 82.7
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.1e-96 357.5 225 81.8
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.1e-96 355.9 225 80.9
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 3.1e-96 355.9 244 77.0
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 5.4e-96 355.1 225 81.8
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 5.4e-96 355.1 225 80.4
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 5.4e-96 355.1 225 82.2
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 7.0e-96 354.8 225 80.4
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 2.7e-95 352.8 230 78.7
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 2.7e-95 352.8 224 81.7
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 2.7e-95 352.8 224 81.7
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.5e-95 352.4 225 80.4
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.5e-95 352.4 225 80.4
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 3.5e-95 352.4 272 70.2
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 3.5e-95 352.4 224 81.2
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 4.5e-95 352.1 224 81.2
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 2.3e-94 349.7 252 72.6
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 2.9e-94 349.4 233 78.5
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 2.9e-94 349.4 226 76.5
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 8.6e-94 347.8 223 80.3
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 8.6e-94 347.8 309 64.1
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.1e-93 347.4 303 62.4
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 1.1e-93 347.4 307 64.8
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.3e-93 345.9 225 78.2
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.2e-93 345.5 309 63.4
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 7.2e-93 344.7 309 60.8
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 9.5e-93 344.4 311 61.1
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 9.5e-93 344.4 305 62.6
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 1.2e-92 344.0 222 78.8
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 1.6e-92 343.6 219 79.9
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.6e-92 343.6 225 79.1
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 2.1e-92 343.2 225 80.4
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 2.1e-92 343.2 226 78.8
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 2.1e-92 343.2 249 71.5
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 3.6e-92 342.4 225 77.8
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 3.6e-92 342.4 225 78.7
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 4.7e-92 342.0 295 63.4
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 4.7e-92 342.0 276 68.5
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 6.1e-92 341.7 313 61.3
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 8.0e-92 341.3 227 76.2
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 8.0e-92 341.3 399 54.1
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.0e-91 340.9 248 73.8
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.0e-91 340.9 296 64.5
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.4e-91 340.5 278 64.7
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 3.0e-91 339.3 244 72.5
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 3.0e-91 339.3 231 74.5
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 3.0e-91 339.3 231 74.5
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 3.0e-91 339.3 244 72.5
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 3.0e-91 339.3 225 77.3
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 4.0e-91 339.0 221 78.3
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 4.0e-91 339.0 227 76.7
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 4.0e-91 339.0 242 74.0
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 4.0e-91 339.0 211 82.0
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 4.0e-91 339.0 219 81.3
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 5.2e-91 338.6 254 70.1
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 5.2e-91 338.6 219 81.3
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 8.9e-91 337.8 272 66.5
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 1.2e-90 337.4 226 76.1
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 2.0e-90 336.7 227 76.7
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 2.0e-90 336.7 240 75.4
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 2.6e-90 336.3 219 80.8
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 9.8e-90 334.3 227 76.2
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 9.8e-90 334.3 228 75.0
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 1.3e-89 334.0 249 71.1
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.7e-89 333.6 306 63.1
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 2.2e-89 333.2 225 76.0
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 2.8e-89 332.8 228 74.6
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 4.9e-89 332.0 228 74.6
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 6.3e-89 331.6 247 72.1
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 6.3e-89 331.6 225 76.4
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.4e-88 330.5 223 75.3
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 4.1e-88 328.9 218 78.0
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 2.0e-87 326.6 231 73.6
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 4.5e-87 325.5 231 73.2
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 2.9e-86 322.8 221 74.7
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 5.0e-86 322.0 235 74.5
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 8.6e-86 321.2 225 73.8
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 2.5e-85 319.7 235 74.0
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.2e-84 317.4 216 75.0
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 2.8e-84 316.2 222 75.2
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 6.8e-83 311.6 257 63.8
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 3.4e-82 309.3 222 71.6
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 1.1e-80 304.3 231 67.5
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 1.1e-80 304.3 219 70.3
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.4e-80 303.9 220 70.9
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 1.2e-79 300.8 249 65.9
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 2.8e-76 289.7 177 81.4
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 3.1e-75 286.2 177 84.2
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.9e-72 276.9 169 82.8
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.7e-70 270.4 190 74.7
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 2.3e-70 270.0 316 52.5
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.1e-69 267.7 218 66.1
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 2.8e-68 263.1 198 73.2
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.8e-68 263.1 166 80.7
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 7.1e-64 248.4 205 67.3
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 1.2e-63 247.7 311 48.2
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 6.0e-63 245.4 190 70.5
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 9.5e-61 238.0 173 72.3
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 9.5e-61 238.0 239 57.7
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.6e-60 237.3 186 67.7
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.6e-60 237.3 158 79.1
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 8.1e-60 235.0 184 66.3
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 8.1e-60 235.0 184 66.3
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 7.6e-58 228.4 178 67.4
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 4.2e-56 222.6 164 72.6
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 1.7e-54 217.2 184 60.9
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 8.7e-54 214.9 180 62.2
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 5.3e-51 205.7 185 58.4
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 4.3e-45 186.0 153 62.7
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 5.3e-35 152.5 308 37.7
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 2.5e-29 133.7 243 35.4
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 6.5e-25 119.0 68 82.4
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 3.3e-21 106.7 209 35.9
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 9.0e-19 98.6 198 34.8
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 2.2e-17 94.0 235 31.5
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.6e-15 87.8 252 31.3
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 3.7e-12 76.6 42 83.3
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 4.1e-11 73.2 45 82.2
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.0e-10 70.9 41 80.5
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 2.2e-09 67.4 51 66.7
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 3.8e-09 66.6 51 64.7
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 9.4e-08 62.0 178 28.7
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.3e-06 57.4 161 32.3


User provided reference genes

Program Settings