Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 4.6e-210 734.9 578 100.0
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 8.6e-108 395.2 565 62.5
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 7.6e-104 382.1 566 63.3
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 7.6e-104 382.1 388 72.4
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 4.1e-102 376.3 531 52.4
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 7.1e-102 375.6 557 51.5
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 1.9e-99 367.5 565 58.6
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 1.5e-91 341.3 565 61.6
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 2.1e-90 337.4 561 50.6
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 4.0e-89 333.2 565 58.4
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 8.4e-87 325.5 575 43.3
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 4.6e-85 319.7 565 60.0
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 3.0e-84 317.0 565 57.7
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 8.7e-84 315.5 553 51.0
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.1e-82 310.8 548 56.8
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 8.1e-82 308.9 562 58.2
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.4e-81 308.1 386 60.1
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 1.8e-81 307.8 568 48.9
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.2e-80 305.1 376 61.4
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 4.5e-80 303.1 567 56.8
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 9.9e-80 302.0 565 59.5
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.6e-77 294.7 564 45.7
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.6e-77 293.1 377 60.5
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.3e-76 291.6 534 46.6
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 4.5e-72 276.6 565 46.5
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 2.5e-70 270.8 548 52.0
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 4.6e-69 266.5 391 58.8
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 3.9e-68 263.5 367 46.9
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.9e-67 261.2 565 56.8
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.2e-66 257.7 367 46.0
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 3.1e-65 253.8 568 46.3
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 7.6e-64 249.2 367 42.8
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 2.2e-63 247.7 573 52.4
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 5.0e-63 246.5 584 44.3
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 1.9e-62 244.6 368 57.9
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 4.3e-59 233.4 367 53.4
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 9.7e-59 232.3 565 48.7
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 6.9e-57 226.1 569 44.5
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 9.1e-57 225.7 591 41.6
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 1.2e-56 225.3 569 44.5
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 2.6e-56 224.2 559 48.5
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.7e-55 221.5 568 57.6
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 1.7e-55 221.5 466 50.2
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 8.5e-55 219.2 568 57.4
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 1.9e-54 218.0 568 54.6
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 1.6e-53 214.9 565 51.2
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 2.1e-53 214.5 370 45.9
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 2.7e-53 214.2 568 34.5
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 7.9e-53 212.6 548 54.0
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 7.9e-53 212.6 381 42.0
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 7.9e-53 212.6 564 47.3
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 1.0e-52 212.2 567 49.0
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 8.8e-52 209.1 388 41.5
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 2.0e-51 208.0 559 49.0
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 7.4e-51 206.1 542 47.6
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 7.4e-51 206.1 377 48.5
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.3e-50 205.3 591 43.0
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 1.3e-50 205.3 513 49.1
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 2.2e-50 204.5 566 43.1
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 2.8e-50 204.1 555 44.5
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 6.3e-50 203.0 567 44.8
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 6.3e-50 203.0 569 42.9
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 1.8e-49 201.4 565 49.0
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 2.4e-49 201.1 568 51.2
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 5.3e-49 199.9 565 47.6
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 5.3e-49 199.9 553 46.3
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 3.4e-48 197.2 568 50.2
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 4.5e-48 196.8 537 47.1
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 3.8e-47 193.7 572 41.4
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 3.8e-47 193.7 541 51.4
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 3.8e-47 193.7 508 49.2
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.1e-46 192.2 403 39.7
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 4.2e-46 190.3 565 38.8
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 1.2e-45 188.7 535 32.3
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 1.0e-44 185.7 365 50.4
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 1.4e-44 185.3 365 50.1
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 3.0e-44 184.1 380 37.9
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 3.3e-43 180.6 562 34.9
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 9.7e-43 179.1 564 51.4
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 1.7e-42 178.3 567 45.9
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 2.8e-42 177.6 565 45.0
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 3.7e-42 177.2 292 52.7
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 7.0e-41 172.9 569 46.6
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.0e-40 171.4 566 55.1
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.6e-40 171.0 299 54.2
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 2.2e-39 167.9 554 43.0
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 6.5e-39 166.4 570 47.7
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 3.6e-37 160.6 536 36.2
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 4.7e-37 160.2 371 42.9
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 4.7e-37 160.2 566 38.0
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 2.3e-36 157.9 568 36.6
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 3.0e-36 157.5 208 40.9
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.2e-35 155.6 391 31.5
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 1.5e-35 155.2 553 43.8
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 2.6e-35 154.5 202 42.1
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 2.6e-35 154.5 392 40.8
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 1.1e-33 149.1 365 46.0
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 1.1e-33 149.1 365 46.0
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 1.1e-33 149.1 365 46.0
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 4.1e-33 147.1 384 39.1
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 5.3e-33 146.7 375 33.1
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 8.5e-31 139.4 569 42.7
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 8.5e-31 139.4 569 42.7
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 1.9e-30 138.3 197 40.6
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 5.5e-30 136.7 337 44.2
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 2.1e-29 134.8 392 42.9
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 2.7e-29 134.4 371 39.9
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 8.0e-29 132.9 573 38.2
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 2.6e-27 127.9 583 48.9
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 4.4e-27 127.1 297 60.6
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 7.5e-27 126.3 259 53.7
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 2.8e-26 124.4 392 41.8
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 4.8e-26 123.6 566 51.2
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 4.8e-26 123.6 591 35.9
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 6.3e-26 123.2 377 45.9
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.1e-25 120.9 116 63.8
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 1.6e-24 118.6 566 41.2
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 1.6e-24 118.6 392 36.5
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 7.7e-24 116.3 269 45.4
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 1.7e-23 115.2 382 37.4
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 1.5e-22 112.1 501 29.1
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 2.1e-21 108.2 566 42.9
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 2.3e-20 104.8 392 35.5
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 4.0e-20 104.0 358 49.2
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 4.0e-20 104.0 549 33.7
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 1.5e-19 102.1 577 38.6
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 2.6e-19 101.3 383 35.8
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 3.4e-19 100.9 327 43.4
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 4.9e-18 97.1 536 24.3
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 4.9e-18 97.1 269 33.1
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.1e-17 95.9 392 34.2
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 1.8e-17 95.1 392 39.0
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 2.7e-16 91.3 547 36.9
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.5e-16 90.9 115 52.2
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 1.3e-15 89.0 60 78.3
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 3.8e-15 87.4 565 36.3
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 5.0e-15 87.0 108 50.9
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 8.6e-15 86.3 239 28.5
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 9.5e-14 82.8 112 45.5
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 4.7e-13 80.5 380 39.5
BolC1t04796H Brassica oleracea HOM05D004642 ORTHO05D005466 1.0e-12 79.3 103 45.6
MD09G1213400 Malus domestica HOM05D004642 ORTHO05D005466 1.0e-12 79.3 92 48.9
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 1.5e-11 75.5 542 45.6
A03p54580 Brassica napus HOM05D004642 ORTHO05D005466 5.8e-11 73.6 330 37.0
BraA03t14525Z Brassica rapa HOM05D004642 ORTHO05D005466 5.8e-11 73.6 330 37.0
AL776U10010 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 1.7e-10 72.0 84 53.6
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.1e-09 69.3 115 45.2
BolC1t04793H Brassica oleracea HOM05D004642 ORTHO05D005466 2.4e-09 68.2 172 32.6
BraA01t03868Z Brassica rapa HOM05D004642 ORTHO05D005466 9.2e-09 66.2 300 25.7
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 1.2e-08 65.9 365 24.9
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 8.6e-07 59.7 58 60.3
COL.COLO4_28069 Corchorus olitorius HOM05D004642 ORTHO05D005466 9.5e-06 56.2 64 50.0


User provided reference genes

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