Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030592 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D004422 1.1e-90 336.7 171 100.0
CSS0048631 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D004422 9.8e-68 260.4 170 80.0
CSS0025082 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D004422 2.2e-67 259.2 170 79.4
CSS0038088 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D004422 1.1e-63 246.9 170 77.1
CSS0045401 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D004422 4.6e-57 224.9 170 72.9
Dinv43591 Davidia involucrata HOM05D000086 ORTHO05D004422 7.8e-49 197.6 173 64.2
Dinv44025 Davidia involucrata HOM05D000086 ORTHO05D004422 3.6e-46 188.7 177 61.0
CSS0045295 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D004422 3.1e-45 185.7 170 61.8
CSS0017499 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D004422 2.2e-43 179.5 173 57.8
Lj9A550G67 Lonicera japonica HOM05D000086 ORTHO05D004422 2.9e-43 179.1 172 55.8
Hma1.2p1_0173F.1_g076500 Hydrangea macrophylla HOM05D000086 ORTHO05D004422 1.4e-42 176.8 179 58.1
Rhsim01G0143200 Rhododendron simsii HOM05D000086 ORTHO05D004422 2.3e-40 169.5 169 58.6
Actinidia12626 Actinidia chinensis HOM05D000086 ORTHO05D004422 1.9e-39 166.4 172 55.2
Nitab4.5_0007434g0010 Nicotiana tabacum HOM05D000086 ORTHO05D004422 5.8e-36 154.8 183 51.4
Lj7A551T53 Lonicera japonica HOM05D000086 ORTHO05D004422 9.9e-36 154.1 173 52.6
Nitab4.5_0005064g0030 Nicotiana tabacum HOM05D000086 ORTHO05D004422 1.3e-35 153.7 183 50.8
Sopen01g035480 Solanum pennellii HOM05D000086 ORTHO05D004422 2.2e-35 152.9 184 51.1
vmacro13531 Vaccinium macrocarpon HOM05D000086 ORTHO05D004422 2.9e-35 152.5 173 52.0
Peaxi162Scf01569g00002 Petunia axillaris HOM05D000086 ORTHO05D004422 1.9e-34 149.8 186 50.0
PGSC0003DMG400001719 Solanum tuberosum HOM05D000086 ORTHO05D004422 2.4e-34 149.4 184 50.0
Solyc01g088630.3 Solanum lycopersicum HOM05D000086 ORTHO05D004422 7.1e-34 147.9 184 48.4
Oeu018161.1 Olea europaea HOM05D000086 ORTHO05D004422 9.3e-34 147.5 190 50.5
Hma1.2p1_1254F.1_g270570 Hydrangea macrophylla HOM05D000086 ORTHO05D004422 2.7e-33 146.0 175 52.6
Cc02_g25580 Coffea canephora HOM05D000086 ORTHO05D004422 1.3e-32 143.7 188 47.9
DCAR_031018 Daucus carota HOM05D000001 ORTHO05D004422 6.6e-32 141.4 175 54.9
Lsat_1_v5_gn_4_38480 Lactuca sativa HOM05D000086 ORTHO05D004422 1.5e-31 140.2 184 47.3
Migut.B01490 Erythranthe guttata HOM05D000086 ORTHO05D004422 2.5e-31 139.4 184 50.0
MSTRG.17110 Avicennia marina HOM05D000086 ORTHO05D004422 5.6e-31 138.3 187 48.7
Lsat_1_v5_gn_1_82780 Lactuca sativa HOM05D000086 ORTHO05D004422 1.6e-30 136.7 183 49.2
DCAR_025029 Daucus carota HOM05D000086 ORTHO05D004422 9.0e-29 131.0 176 47.7
unitig_750.g28407 Utricularia gibba HOM05D000086 ORTHO05D004422 9.0e-29 131.0 188 47.9
SGA_v2.0_scaffold52G19265 Striga asiatica HOM05D000086 ORTHO05D004422 1.5e-28 130.2 175 51.4
Rhsim07G0039200 Rhododendron simsii HOM05D000086 ORTHO05D004422 7.6e-28 127.9 172 48.3
HanXRQChr12g0383291 Helianthus annuus HOM05D000086 ORTHO05D004422 9.9e-28 127.5 174 46.6
Nitab4.5_0000735g0050 Nicotiana tabacum HOM05D000086 ORTHO05D004422 1.3e-27 127.1 178 45.5
Rhsim07G0039300 Rhododendron simsii HOM05D000086 ORTHO05D004422 2.2e-27 126.3 172 47.7
MSTRG.20664 Avicennia marina HOM05D000086 ORTHO05D004422 2.9e-27 125.9 192 46.4
Cfa011026 Carpinus fangiana HOM05D000086 ORTHO05D004422 1.9e-26 123.2 172 44.2
Haze_02899 Corylus avellana HOM05D000086 ORTHO05D004422 2.4e-26 122.9 172 44.2
Sed0027435 Sechium edule HOM05D000086 ORTHO05D004422 2.4e-26 122.9 173 44.5
CsaV3_3G010450 Cucumis sativus L. HOM05D000086 ORTHO05D004422 5.4e-26 121.7 173 45.1
HanXRQChr01g0017541 Helianthus annuus HOM05D000086 ORTHO05D004422 9.3e-26 120.9 182 44.0
ClCG00G002490 Citrullus lanatus HOM05D000086 ORTHO05D004422 1.2e-25 120.6 173 45.1
Oeu037415.1 Olea europaea HOM05D000086 ORTHO05D004422 2.7e-25 119.4 194 44.8
Thecc.01G402200 Theobroma cacao HOM05D000086 ORTHO05D004422 2.7e-25 119.4 178 42.7
COL.COLO4_12355 Corchorus olitorius HOM05D000086 ORTHO05D004422 4.6e-25 118.6 178 44.4
MELO3C006269.2 Cucumis melo HOM05D000086 ORTHO05D004422 4.6e-25 118.6 174 43.7
HanXRQChr16g0521031 Helianthus annuus HOM05D000086 ORTHO05D004422 4.6e-25 118.6 191 41.9
CiPaw.14G017100 Carya illinoinensis HOM05D000086 ORTHO05D004422 1.3e-24 117.1 173 42.2
Gohir.D08G065600 Gossypium hirsutum HOM05D000086 ORTHO05D004422 1.5e-23 113.6 179 42.5
Gorai.004G067900 Gossypium raimondii HOM05D000086 ORTHO05D004422 1.5e-23 113.6 179 42.5
TWI59G0209 Tripterygium wilfordii HOM05D000086 ORTHO05D004422 1.9e-23 113.2 177 43.5
Cpa.g.sc52.73 Carica papaya HOM05D000086 ORTHO05D004422 2.5e-23 112.8 184 41.3
Manes.05G058200 Manihot esculenta HOM05D000086 ORTHO05D004422 2.5e-23 112.8 171 43.9
Nitab4.5_0000204g0080 Nicotiana tabacum HOM05D000086 ORTHO05D004422 3.3e-23 112.5 178 43.3
Gohir.A08G056200 Gossypium hirsutum HOM05D000086 ORTHO05D004422 4.3e-23 112.1 179 41.9
Atru.chr5.46 Acer truncatum HOM05D000086 ORTHO05D004422 5.6e-23 111.7 174 40.8
Atru.chr5.77 Acer truncatum HOM05D000086 ORTHO05D004422 5.6e-23 111.7 174 40.8
Ciclev10020616m.g Citrus clementina HOM05D000086 ORTHO05D004422 7.4e-23 111.3 174 43.1
CiPaw.13G022200 Carya illinoinensis HOM05D000086 ORTHO05D004422 1.3e-22 110.5 174 39.7
unitig_26.g8856 Utricularia gibba HOM05D000086 ORTHO05D004422 3.7e-22 109.0 184 43.5
ECA234G2270 Erigeron canadensis HOM05D000086 ORTHO05D004422 4.8e-22 108.6 178 44.4
Duzib138G0523 Durio zibethinus HOM05D000086 ORTHO05D004422 6.2e-22 108.2 175 41.1
Gorai.008G111300 Gossypium raimondii HOM05D000086 ORTHO05D004422 1.4e-21 107.1 159 44.0
Gohir.A12G099100 Gossypium hirsutum HOM05D000086 ORTHO05D004422 1.8e-21 106.7 159 44.0
Gohir.D12G102100 Gossypium hirsutum HOM05D000086 ORTHO05D004422 4.0e-21 105.5 159 43.4
Lj3g0001676 Lotus japonicus HOM05D000086 ORTHO05D004422 4.0e-21 105.5 186 40.9
Sabra14G0040100 Salix brachista HOM05D000086 ORTHO05D004422 5.3e-21 105.1 187 40.6
QL02p075861 Quercus lobata HOM05D000086 ORTHO05D004422 6.9e-21 104.8 180 39.4
QL04p026273 Quercus lobata HOM05D000086 ORTHO05D004422 6.9e-21 104.8 180 39.4
Sed0000015 Sechium edule HOM05D000086 ORTHO05D004422 6.9e-21 104.8 173 41.0
Nn1g00681 Nelumbo nucifera HOM05D000086 ORTHO05D004422 9.0e-21 104.4 219 37.0
Potri.014G053600 Populus trichocarpa HOM05D000086 ORTHO05D004422 9.0e-21 104.4 187 39.6
Duzib133G0943 Durio zibethinus HOM05D000086 ORTHO05D004422 1.2e-20 104.0 178 40.4
Nn6g33707 Nelumbo nucifera HOM05D000086 ORTHO05D004422 1.5e-20 103.6 206 38.3
unitig_0.g1333 Utricularia gibba HOM05D000086 ORTHO05D004422 1.5e-20 103.6 148 46.6
Lalb_Chr13g0290821 Lupinus albus HOM05D000086 ORTHO05D004422 2.6e-20 102.8 149 46.3
Psat4g221760 Pisum sativum HOM05D000086 ORTHO05D004422 4.5e-20 102.1 173 41.0
CANSAT25G2728 Cannabis sativa HOM05D000086 ORTHO05D004422 7.6e-20 101.3 174 38.5
Medtr8g009190 Medicago truncatula HOM05D000086 ORTHO05D004422 1.3e-19 100.5 180 41.7
Gohir.D08G161600 Gossypium hirsutum HOM05D000086 ORTHO05D004422 2.2e-19 99.8 178 38.8
Ca_23140_v3 Cicer arietinum L. HOM05D000086 ORTHO05D004422 2.9e-19 99.4 177 43.5
VMungo0331G0045 Vigna mungo HOM05D000086 ORTHO05D004422 2.9e-19 99.4 194 38.1
Phvul.010G041800 Phaseolus vulgaris HOM05D000086 ORTHO05D004422 3.8e-19 99.0 192 38.5
SGA_v2.0_scaffold77G25256 Striga asiatica HOM05D000086 ORTHO05D004422 3.8e-19 99.0 177 42.9
AL5G42430 Arabidopsis lyrata HOM05D000086 ORTHO05D004422 6.5e-19 98.2 176 36.9
PGR042G1612 Punica granatum HOM05D000086 ORTHO05D004422 6.5e-19 98.2 149 47.0
Gorai.004G168000 Gossypium raimondii HOM05D000086 ORTHO05D004422 8.4e-19 97.8 178 38.2
C06p26580 Brassica napus HOM05D000086 ORTHO05D004422 1.1e-18 97.4 183 36.1
BcaC08g45028 Brassica carinata HOM05D000086 ORTHO05D004422 2.5e-18 96.3 187 37.4
BcaC08g45039 Brassica carinata HOM05D000086 ORTHO05D004422 2.5e-18 96.3 187 37.4
Thhalv10006088m.g Eutrema salsugineum HOM05D000086 ORTHO05D004422 3.2e-18 95.9 180 38.9
CARHR170530 Cardamine hirsuta HOM05D000086 ORTHO05D004422 4.2e-18 95.5 176 40.3
Peaxi162Scf00103g00144 Petunia axillaris HOM05D000086 ORTHO05D004422 4.2e-18 95.5 176 42.6
BolC6t37823H Brassica oleracea HOM05D000086 ORTHO05D004422 5.5e-18 95.1 189 38.1
Aa31LG10G14350 Aethionema arabicum HOM05D000086 ORTHO05D004422 7.1e-18 94.7 184 37.0
AT3G60220 Arabidopsis thaliana HOM05D000086 ORTHO05D004422 7.1e-18 94.7 180 38.3
ECA248G1798 Erigeron canadensis HOM05D000086 ORTHO05D004422 9.3e-18 94.4 150 43.3
Glyma.03G103800 Glycine max HOM05D000086 ORTHO05D004422 9.3e-18 94.4 196 39.8
TWI14G1355 Tripterygium wilfordii HOM05D000086 ORTHO05D004422 1.6e-17 93.6 178 39.9
TAR629G3030 Trochodendron aralioides HOM05D000086 ORTHO05D004422 2.1e-17 93.2 194 37.6
Carub.0005s2696 Capsella rubella HOM05D000086 ORTHO05D004422 2.7e-17 92.8 177 39.0
Duzib268G1824 Durio zibethinus HOM05D000086 ORTHO05D004422 3.5e-17 92.4 178 37.6
Glyma.15G183300 Glycine max HOM05D000086 ORTHO05D004422 3.5e-17 92.4 182 36.8
Gohir.A08G140601 Gossypium hirsutum HOM05D000086 ORTHO05D004422 4.6e-17 92.0 127 46.5
Aqoxy3G02615 Aquilegia oxysepala HOM05D000086 ORTHO05D004422 6.0e-17 91.7 199 36.7
A07p25010 Brassica napus HOM05D000086 ORTHO05D004422 6.0e-17 91.7 187 35.8
MD02G1223200 Malus domestica HOM05D000086 ORTHO05D004422 6.0e-17 91.7 159 41.5
BraA07t30141Z Brassica rapa HOM05D000086 ORTHO05D004422 1.0e-16 90.9 157 40.1
Sp5g03000 Schrenkiella parvula HOM05D000086 ORTHO05D004422 1.3e-16 90.5 190 37.9
Potri.002G140600 Populus trichocarpa HOM05D000086 ORTHO05D004422 1.8e-16 90.1 165 40.6
TAR636G2273 Trochodendron aralioides HOM05D000086 ORTHO05D004422 3.9e-16 89.0 189 36.0
GSVIVG01018343001 Vitis vinifera HOM05D000086 ORTHO05D004422 3.9e-16 89.0 81 60.5
BcaC07g40416 Brassica carinata HOM05D000086 ORTHO05D004422 6.7e-16 88.2 158 41.8
Gohir.D11G078850 Gossypium hirsutum HOM05D000086 ORTHO05D004422 6.7e-16 88.2 158 39.2
BcaB02g07427 Brassica carinata HOM05D000086 ORTHO05D004422 8.7e-16 87.8 188 35.6
Eucgr.E01678 Eucalyptus grandis HOM05D000086 ORTHO05D004422 8.7e-16 87.8 147 43.5
Eucgr.E01704 Eucalyptus grandis HOM05D000086 ORTHO05D004422 8.7e-16 87.8 147 43.5
Glyma.07G120300 Glycine max HOM05D000086 ORTHO05D004422 1.5e-15 87.0 194 35.1
Gorai.007G084400 Gossypium raimondii HOM05D000086 ORTHO05D004422 1.5e-15 87.0 158 39.2
VMungo1309G1397 Vigna mungo HOM05D000086 ORTHO05D004422 1.9e-15 86.7 194 34.0
Gohir.A11G074150 Gossypium hirsutum HOM05D000086 ORTHO05D004422 2.5e-15 86.3 158 38.6
Medtr2g044570 Medicago truncatula HOM05D000086 ORTHO05D004422 3.3e-15 85.9 182 33.0
Prupe.2G116700 Prunus persica HOM05D000086 ORTHO05D004422 9.6e-15 84.3 180 35.0
MD07G1091500 Malus domestica HOM05D000086 ORTHO05D004422 1.3e-14 84.0 179 32.4
BcaC07g40521 Brassica carinata HOM05D000086 ORTHO05D004422 1.6e-14 83.6 158 41.1
BraA09t40679Z Brassica rapa HOM05D000086 ORTHO05D004422 2.8e-14 82.8 157 41.4
Phvul.009G223100 Phaseolus vulgaris HOM05D000086 ORTHO05D004422 2.8e-14 82.8 192 33.3
THA.LOC104817178 Tarenaya hassleriana HOM05D000086 ORTHO05D004422 2.8e-14 82.8 153 41.8
Ca_02285_v3 Cicer arietinum L. HOM05D000086 ORTHO05D004422 3.7e-14 82.4 175 33.7
C08p35240 Brassica napus HOM05D000086 ORTHO05D004422 1.4e-13 80.5 154 39.6
BolC8t51118H Brassica oleracea HOM05D000086 ORTHO05D004422 1.4e-13 80.5 154 39.6
A09p52490 Brassica napus HOM05D000086 ORTHO05D004422 2.4e-13 79.7 155 41.3
arahy.Tifrunner.gnm1.ann1.FM8SRX Arachis hypogaea HOM05D000086 ORTHO05D004422 2.0e-12 76.6 166 36.7
Sc02g0003250 Simmondsia chinensis HOM05D000086 ORTHO05D004422 4.5e-12 75.5 175 37.1
Psat1g137960 Pisum sativum HOM05D000086 ORTHO05D004422 1.3e-11 73.9 187 31.6
Ah.05g177660 Amaranthus hybridus HOM05D000086 ORTHO05D004422 2.9e-11 72.8 183 35.0
RcHm_v2.0_Chr1g0344271 Rosa chinensis HOM05D000086 ORTHO05D004422 5.0e-11 72.0 149 37.6
SHI13653 Sapria himalayana HOM05D000086 ORTHO05D004422 6.5e-11 71.6 70 52.9
PSO782G0387 Papaver somniferum HOM05D000086 ORTHO05D004422 2.5e-10 69.7 178 35.4
FvH4_7g08860 Fragaria vesca HOM05D000086 ORTHO05D004422 3.2e-10 69.3 148 38.5
FAN06G2163 Fragaria x ananassa HOM05D000086 ORTHO05D004422 3.2e-10 69.3 148 38.5
FAN01G0686 Fragaria x ananassa HOM05D000086 ORTHO05D004422 1.6e-09 67.0 153 37.3
BcaC07g40515 Brassica carinata HOM05D000086 ORTHO05D004422 2.1e-09 66.6 159 37.1
FAN10G2821 Fragaria x ananassa HOM05D000086 ORTHO05D004422 2.1e-09 66.6 149 36.2
FAN03G0924 Fragaria x ananassa HOM05D000086 ORTHO05D004422 3.5e-09 65.9 160 36.9
FAN10G0744 Fragaria x ananassa HOM05D000086 ORTHO05D004422 6.1e-09 65.1 153 36.6
AUR62013786 Chenopodium quinoa HOM05D000086 ORTHO05D004422 1.5e-07 60.5 178 31.5
Zm00001eb251040 Zea mays HOM05D000086 ORTHO05D004422 7.4e-07 58.2 125 36.0
EL10Ac1g00717 Beta vulgaris HOM05D000086 ORTHO05D004422 1.3e-06 57.4 153 33.3
PSO063G1334 Papaver somniferum HOM05D000086 ORTHO05D004422 2.2e-06 56.6 181 31.5
HPP92_025661 Vanilla planifolia HOM05D000086 ORTHO05D004422 8.2e-06 54.7 176 33.0


User provided reference genes

Program Settings