Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 2164.4 1172 100.0
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 2099.3 1193 96.1
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1611.7 1190 72.7
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1603.2 1190 73.0
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1559.3 1043 76.8
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1539.2 1114 71.9
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1438.3 1043 70.9
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1414.1 1047 67.8
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1376.3 1038 67.7
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1365.5 1045 66.7
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1354.3 1036 67.7
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1351.7 1043 67.4
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1349.7 1045 66.1
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1347.8 1040 65.1
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1344.7 1016 66.4
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1339.7 1041 66.6
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1339.3 1040 65.0
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1322.0 1039 64.9
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1320.1 1037 64.1
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1319.7 1041 65.3
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1319.3 1041 66.0
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1315.1 1045 65.1
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1314.3 1015 65.8
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1313.9 926 71.4
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1313.5 1042 64.7
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1312.0 1045 65.1
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1308.9 1037 65.0
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1303.9 1035 64.2
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1303.1 1017 64.5
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1301.2 1016 64.5
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1299.3 1047 63.1
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1297.7 1036 63.2
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1295.0 1017 64.4
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1289.6 1105 60.6
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1284.6 1038 63.8
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1282.7 1014 64.7
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1281.9 1041 63.4
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1281.5 1037 63.2
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1280.8 1038 62.9
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1280.0 1036 62.5
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1276.5 1037 63.0
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1274.6 1036 62.5
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1273.1 1038 63.0
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1270.0 1027 63.7
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1266.9 1037 62.5
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1266.9 1037 62.5
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1264.2 1039 62.6
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1260.4 1037 64.3
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1255.0 1072 60.5
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1252.7 1037 63.3
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1243.4 1033 62.1
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1237.6 1038 61.9
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1237.2 1017 61.3
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1232.6 1028 62.7
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1231.9 1079 60.2
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1223.0 1046 60.4
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1214.1 1048 59.8
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1210.3 1038 60.6
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1209.5 1048 59.4
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1208.0 1001 62.2
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1204.5 1514 47.2
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1202.6 976 64.7
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1199.1 1067 59.4
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1186.4 989 61.7
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1179.5 1025 60.1
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1172.9 1226 54.7
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1167.1 1028 58.4
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1166.8 1027 59.4
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1148.7 1061 57.4
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1146.7 1020 58.3
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1146.3 1016 59.1
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1146.3 1016 59.1
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1141.7 1029 58.5
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1135.9 983 60.4
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 0.0e+00 1129.8 1081 58.3
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1129.0 1038 58.3
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1117.8 1019 58.1
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1110.9 1054 57.4
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 0.0e+00 1101.3 1002 57.9
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 0.0e+00 1089.7 979 58.6
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 2.5e-308 1062.4 1039 54.8
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 5.3e-298 1028.1 1051 52.9
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 3.9e-293 1011.9 1054 51.7
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 3.1e-282 975.7 1036 51.0
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 3.5e-281 972.2 1024 51.4
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 1.3e-275 953.7 1134 48.1
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 1.2e-257 894.0 841 58.5
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 2.0e-257 893.3 718 62.5
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 2.3e-256 889.8 727 61.8
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 2.8e-238 829.7 1071 44.7
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 2.5e-231 806.6 634 63.6
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.7e-219 767.3 707 57.7
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 1.4e-210 737.6 927 45.4
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 3.0e-208 729.9 640 59.4
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 5.1e-208 729.2 632 59.7
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 7.7e-188 662.1 665 54.1
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 8.5e-187 658.7 649 55.6
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 1.4e-186 657.9 972 40.4
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 3.3e-175 620.2 1054 37.8
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 1.6e-169 601.3 471 65.2
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 3.4e-167 593.6 1079 37.0
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 8.3e-166 589.0 1025 35.6
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.0e-160 572.0 1065 36.4
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 4.1e-125 453.8 1235 29.3
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 1.7e-107 395.2 433 52.4
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 6.3e-81 307.0 300 56.7
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 5.0e-62 244.2 241 49.8
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 2.3e-59 235.3 179 63.1
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 7.8e-39 167.2 116 69.0
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 1.5e-21 109.8 71 77.5
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 2.9e-17 95.5 91 50.5
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 1.1e-16 93.6 107 44.9
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 1.4e-16 93.2 81 56.8
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 2.1e-12 79.3 46 78.3
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 9.9e-10 70.5 61 57.4
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.4e-08 66.6 36 77.8
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 6.0e-07 61.2 88 40.9
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 6.0e-07 61.2 36 75.0
Medtr6g072310 Medicago truncatula HOM05D000005 ORTHO05D000012 6.0e-07 61.2 90 40.0
Lsat_1_v5_gn_5_105340 Lactuca sativa HOM05D006302 ORTHO05D007960 1.0e-06 60.5 77 44.2
SGA_v2.0_scaffold100G29654 Striga asiatica HOM05D006302 ORTHO05D007960 1.7e-06 59.7 35 77.1


User provided reference genes

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