Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 8.1e-110 400.6 229 100.0
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 4.0e-101 371.7 229 94.3
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 1.2e-100 370.2 229 94.3
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 4.5e-100 368.2 229 93.9
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 3.5e-97 358.6 226 92.0
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 1.0e-96 357.1 232 91.4
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.8e-96 356.3 229 90.8
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 5.1e-96 354.8 229 93.0
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 6.7e-96 354.4 229 90.8
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 8.7e-96 354.0 229 90.0
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 8.7e-96 354.0 229 90.0
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 8.7e-96 354.0 230 91.3
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 1.1e-95 353.6 229 90.8
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.9e-95 352.8 229 90.4
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.9e-95 352.8 229 90.4
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 1.9e-95 352.8 269 81.0
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 2.5e-95 352.4 230 90.9
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 2.5e-95 352.4 230 90.9
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 4.3e-95 351.7 229 90.4
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 5.7e-95 351.3 229 90.0
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 9.7e-95 350.5 228 89.9
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 1.6e-94 349.7 230 90.9
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.6e-94 349.7 230 90.4
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.2e-94 349.4 230 90.4
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 2.2e-94 349.4 230 90.9
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 2.2e-94 349.4 230 90.9
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 2.2e-94 349.4 230 90.9
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 2.8e-94 349.0 233 89.7
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 2.8e-94 349.0 228 89.9
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 6.3e-94 347.8 229 90.4
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 3.1e-93 345.5 229 88.2
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 4.1e-93 345.1 229 90.0
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 6.9e-93 344.4 229 90.0
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 1.2e-92 343.6 229 88.2
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 1.5e-92 343.2 229 88.6
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.0e-92 342.8 229 87.8
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 2.0e-92 342.8 229 87.3
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 2.6e-92 342.4 229 87.8
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 2.6e-92 342.4 229 87.8
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 3.4e-92 342.0 229 87.8
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 3.4e-92 342.0 229 89.1
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.7e-92 340.9 229 87.3
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.3e-91 340.1 229 87.3
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.7e-91 339.7 229 87.3
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 1.7e-91 339.7 229 87.3
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 1.7e-91 339.7 229 87.8
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 2.2e-91 339.3 229 87.3
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 2.9e-91 339.0 229 87.3
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 2.9e-91 339.0 229 86.5
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 3.8e-91 338.6 229 88.2
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 6.5e-91 337.8 229 87.8
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.1e-90 337.0 230 87.8
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.1e-90 337.0 230 87.8
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 1.4e-90 336.7 229 86.9
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.5e-90 335.9 230 87.4
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 2.5e-90 335.9 229 87.3
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 2.5e-90 335.9 229 86.0
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 3.2e-90 335.5 229 86.9
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 4.2e-90 335.1 229 86.0
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 5.5e-90 334.7 229 87.3
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 7.2e-90 334.3 229 87.3
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 9.4e-90 334.0 228 86.4
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.2e-89 333.6 229 86.0
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 2.1e-89 332.8 229 87.3
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 2.1e-89 332.8 228 87.3
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 2.7e-89 332.4 229 86.9
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 3.6e-89 332.0 229 86.5
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 3.6e-89 332.0 229 86.0
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 3.6e-89 332.0 227 85.5
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 6.1e-89 331.3 229 85.2
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 6.1e-89 331.3 229 86.5
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 6.1e-89 331.3 229 85.6
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 6.1e-89 331.3 229 86.0
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 7.9e-89 330.9 229 84.7
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.0e-88 330.5 229 86.9
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 1.8e-88 329.7 229 86.0
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 1.8e-88 329.7 229 85.6
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 2.3e-88 329.3 236 83.9
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.3e-88 329.3 229 85.2
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 3.9e-88 328.6 229 85.2
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 3.9e-88 328.6 229 86.5
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 6.7e-88 327.8 229 84.7
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 6.7e-88 327.8 229 86.5
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 6.7e-88 327.8 203 93.6
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 2.0e-87 326.2 228 86.0
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.5e-87 325.9 211 91.5
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 3.3e-87 325.5 229 83.8
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 3.3e-87 325.5 229 83.8
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 3.3e-87 325.5 195 96.4
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 4.3e-87 325.1 229 84.3
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 5.7e-87 324.7 229 84.7
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 5.7e-87 324.7 229 84.7
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 5.7e-87 324.7 229 84.7
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 7.4e-87 324.3 229 83.8
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 7.4e-87 324.3 228 85.5
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 9.7e-87 323.9 229 84.7
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 1.7e-86 323.2 229 83.8
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 1.7e-86 323.2 231 84.4
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 2.2e-86 322.8 229 83.4
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 2.2e-86 322.8 229 83.4
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 2.2e-86 322.8 229 83.4
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.2e-86 322.8 229 83.4
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 2.8e-86 322.4 229 83.8
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 2.8e-86 322.4 229 83.8
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 3.7e-86 322.0 229 83.4
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 3.7e-86 322.0 226 85.8
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 6.3e-86 321.2 229 83.4
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 6.3e-86 321.2 229 83.4
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 6.3e-86 321.2 229 83.4
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 8.2e-86 320.9 229 83.8
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 8.2e-86 320.9 231 84.0
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 1.1e-85 320.5 229 83.0
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 1.1e-85 320.5 229 83.0
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 1.4e-85 320.1 229 83.4
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.8e-85 319.7 229 83.8
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 3.1e-85 318.9 231 83.5
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 2.0e-84 316.2 231 83.1
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 2.6e-84 315.8 229 83.8
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 5.5e-82 308.1 233 82.8
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.7e-81 305.8 285 62.5
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 3.6e-81 305.4 185 95.1
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 7.9e-81 304.3 185 94.6
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 1.4e-80 303.5 211 86.3
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 1.8e-80 303.1 229 80.8
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 6.7e-80 301.2 179 98.3
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.1e-79 300.4 210 84.8
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 1.5e-79 300.1 235 79.1
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 1.5e-79 300.1 214 85.5
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 7.4e-79 297.7 197 88.8
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.7e-78 296.6 184 94.6
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 2.8e-78 295.8 229 79.5
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 1.3e-75 287.0 197 89.3
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 6.5e-75 284.6 185 89.7
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 5.5e-74 281.6 168 97.6
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 1.6e-73 280.0 197 86.3
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 1.6e-73 280.0 185 90.3
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 8.0e-73 277.7 229 73.8
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 7.0e-69 264.6 187 84.0
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 7.0e-69 264.6 184 85.9
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 8.5e-67 257.7 164 90.9
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 1.1e-66 257.3 169 88.8
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.1e-66 257.3 226 64.6
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 4.2e-66 255.4 198 78.8
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.0e-64 249.2 180 82.8
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 8.8e-64 247.7 148 99.3
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 3.1e-61 239.2 148 92.6
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 9.1e-61 237.7 187 77.5
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 3.8e-59 232.3 178 73.0
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 1.2e-57 227.3 178 79.2
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 3.6e-57 225.7 214 65.9
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 2.3e-56 223.0 137 97.1
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.7e-54 216.9 244 56.1
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 2.4e-53 213.0 185 70.8
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 3.1e-53 212.6 138 77.5
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 3.1e-53 212.6 159 70.4
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 1.7e-51 206.8 153 83.0
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 8.6e-51 204.5 132 95.5
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 1.6e-49 200.3 162 75.9
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 2.6e-47 193.0 128 75.8
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 7.5e-47 191.4 161 67.1
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 7.8e-36 154.8 124 67.7
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 6.2e-33 145.2 127 61.4
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 9.8e-31 137.9 229 44.1
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 6.8e-24 115.2 209 40.2
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 8.6e-19 98.2 109 50.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 1.5e-18 97.4 47 100.0
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 3.6e-17 92.8 78 65.4
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.8e-08 63.9 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.5e-07 60.8 60 53.3


User provided reference genes

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