Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.5e-59 232.6 114 100.0
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.5e-59 232.6 114 100.0
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 1.3e-36 156.4 113 71.7
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.1e-33 146.7 120 65.8
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 3.9e-28 128.3 111 62.2
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 5.6e-27 124.4 114 57.9
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 7.3e-27 124.0 109 60.6
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 6.2e-26 120.9 115 56.5
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 1.8e-25 119.4 110 58.2
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.4e-25 119.0 110 59.1
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 4.0e-25 118.2 113 54.0
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 8.9e-25 117.1 104 58.7
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 2.6e-24 115.5 112 51.8
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 3.4e-24 115.2 108 54.6
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 3.4e-24 115.2 104 57.7
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 7.6e-24 114.0 102 58.8
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 1.7e-23 112.8 108 55.6
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 3.8e-23 111.7 110 53.6
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 4.9e-23 111.3 110 55.5
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.1e-22 110.2 107 46.7
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.4e-22 109.8 106 55.7
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 1.9e-22 109.4 107 48.6
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.4e-22 109.0 110 53.6
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 3.2e-22 108.6 108 54.6
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 3.2e-22 108.6 109 51.4
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 4.2e-22 108.2 112 47.3
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 5.4e-22 107.8 109 54.1
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 7.1e-22 107.5 114 50.0
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 9.3e-22 107.1 114 50.0
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.1e-21 105.9 112 49.1
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.1e-21 105.9 112 49.1
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 2.1e-21 105.9 111 48.6
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 2.7e-21 105.5 111 53.2
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 3.5e-21 105.1 108 48.1
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 4.6e-21 104.8 114 50.0
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 4.6e-21 104.8 112 48.2
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 6.0e-21 104.4 111 52.3
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 6.0e-21 104.4 114 48.2
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 1.0e-20 103.6 121 44.6
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.0e-20 103.6 110 53.6
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.3e-20 103.2 113 50.4
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 1.3e-20 103.2 112 50.9
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 2.3e-20 102.4 110 49.1
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 6.6e-20 100.9 113 48.7
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 1.5e-19 99.8 107 47.7
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.5e-19 99.0 104 51.9
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 2.5e-19 99.0 113 48.7
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 2.5e-19 99.0 125 45.6
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 5.6e-19 97.8 114 47.4
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 5.6e-19 97.8 110 50.0
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 7.3e-19 97.4 116 48.3
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.3e-18 96.7 104 51.0
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 1.6e-18 96.3 115 47.0
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.1e-18 95.9 104 50.0
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 2.1e-18 95.9 108 46.3
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.1e-18 95.9 110 50.0
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 3.6e-18 95.1 113 45.1
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 3.6e-18 95.1 110 50.0
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 6.2e-18 94.4 110 46.4
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 1.1e-17 93.6 109 42.2
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 3.1e-17 92.0 112 43.8
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 4.0e-17 91.7 112 43.8
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 5.3e-17 91.3 112 45.5
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 6.9e-17 90.9 112 44.6
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 1.2e-16 90.1 115 40.0
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 1.2e-16 90.1 112 42.9
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 1.5e-16 89.7 110 48.2
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 2.0e-16 89.4 107 51.4
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 3.4e-16 88.6 106 51.9
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 3.4e-16 88.6 111 49.5
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 3.4e-16 88.6 97 47.4
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 3.4e-16 88.6 106 45.3
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 4.5e-16 88.2 105 46.7
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 9.9e-16 87.0 111 45.0
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.3e-15 86.7 109 49.5
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 1.7e-15 86.3 111 45.0
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 3.8e-15 85.1 105 42.9
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 3.8e-15 85.1 106 44.3
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 3.8e-15 85.1 106 47.2
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 4.9e-15 84.7 102 45.1
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 8.4e-15 84.0 109 42.2
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 1.1e-14 83.6 109 48.6
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.1e-14 83.6 108 43.5
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.1e-14 83.6 108 43.5
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 1.4e-14 83.2 106 40.6
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.4e-14 83.2 103 46.6
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 1.9e-14 82.8 106 44.3
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 1.9e-14 82.8 118 42.4
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 4.2e-14 81.6 106 44.3
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 5.4e-14 81.3 106 44.3
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 5.4e-14 81.3 111 42.3
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 5.4e-14 81.3 100 43.0
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 6.0e-13 77.8 108 41.7
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.3e-12 76.6 113 43.4
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 1.3e-12 76.6 133 38.3
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 1.8e-12 76.3 108 41.7
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 1.8e-12 76.3 127 39.4
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.8e-12 76.3 109 45.9
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.8e-12 76.3 109 45.9
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 1.8e-12 76.3 112 40.2
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 1.8e-12 76.3 113 40.7
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 2.3e-12 75.9 107 41.1
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.3e-12 75.9 106 41.5
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.0e-12 75.5 105 41.0
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 5.1e-12 74.7 117 36.8
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 8.7e-12 73.9 107 42.1
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 1.5e-11 73.2 135 34.1
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 2.5e-11 72.4 130 36.2
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.5e-11 72.4 106 43.4
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.5e-11 72.4 106 43.4
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 3.3e-11 72.0 108 44.4
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 3.3e-11 72.0 106 39.6
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 4.3e-11 71.6 108 37.0
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 4.3e-11 71.6 105 41.0
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 7.4e-11 70.9 107 41.1
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 7.4e-11 70.9 106 42.5
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 9.6e-11 70.5 107 44.9
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 2.8e-10 68.9 107 35.5
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 3.6e-10 68.6 108 37.0
Actinidia26927 Actinidia chinensis HOM05D004992 ORTHO05D006004 4.8e-10 68.2 78 52.6
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 6.2e-10 67.8 105 40.0
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 6.2e-10 67.8 114 37.7
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 8.1e-10 67.4 108 37.0
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 1.4e-09 66.6 110 39.1
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 4.0e-09 65.1 110 38.2
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 4.0e-09 65.1 112 35.7
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 5.3e-09 64.7 107 41.1
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 6.9e-09 64.3 110 39.1
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 6.9e-09 64.3 102 39.2
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 1.2e-08 63.5 114 36.0
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 2.6e-08 62.4 71 49.3
ECA236G4773 Erigeron canadensis HOM05D003428 ORTHO05D004131 3.4e-08 62.0 85 40.0
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 1.3e-07 60.1 104 35.6
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 2.2e-07 59.3 113 36.3
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 2.9e-07 58.9 87 42.5
Medtr5g092085 Medicago truncatula HOM05D004992 ORTHO05D006004 4.9e-07 58.2 74 41.9
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 4.9e-07 58.2 110 39.1
CiPaw.12G127900 Carya illinoinensis HOM05D004992 ORTHO05D006004 8.4e-07 57.4 92 40.2
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 1.1e-06 57.0 111 32.4
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 1.1e-06 57.0 111 32.4
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 1.1e-06 57.0 111 32.4
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 1.1e-06 57.0 117 35.9
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 1.4e-06 56.6 111 33.3
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 4.2e-06 55.1 110 31.8
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 9.3e-06 53.9 116 34.5


User provided reference genes

Program Settings