Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.4e-296 1021.5 555 100.0
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.2e-279 966.1 591 87.0
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 2.3e-214 749.2 566 71.6
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 1.9e-205 719.5 506 75.1
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 2.5e-205 719.2 585 72.6
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 4.7e-196 688.3 575 71.8
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.6e-191 673.3 561 65.1
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 3.9e-190 668.7 559 65.7
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 5.6e-189 664.8 558 65.4
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 3.1e-187 659.1 563 63.2
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 1.6e-183 646.7 561 64.0
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 9.6e-181 637.5 560 62.1
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 2.4e-179 632.9 560 61.6
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 6.9e-179 631.3 560 61.6
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.5e-178 630.2 562 63.0
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 3.2e-176 622.5 561 61.9
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 1.8e-174 616.7 573 59.7
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 2.3e-174 616.3 556 62.9
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 3.9e-174 615.5 564 61.3
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 1.9e-173 613.2 564 62.4
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 1.9e-173 613.2 560 60.9
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 3.3e-173 612.5 566 60.1
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 6.2e-172 608.2 570 60.9
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 5.3e-171 605.1 578 57.8
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.2e-170 604.0 556 60.8
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 1.3e-169 600.5 413 81.4
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 3.8e-169 599.0 562 61.0
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.4e-168 597.0 562 60.3
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 3.2e-168 595.9 556 61.2
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 3.5e-167 592.4 564 58.3
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 3.0e-166 589.3 560 60.5
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 4.3e-165 585.5 566 57.4
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 7.4e-165 584.7 569 59.8
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.0e-162 576.6 661 51.0
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 2.9e-161 572.8 661 51.0
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 1.2e-159 567.4 633 52.8
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 7.9e-159 564.7 469 63.3
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 2.3e-158 563.1 555 57.8
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 3.9e-158 562.4 566 56.7
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.9e-157 560.1 568 56.0
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 3.3e-157 559.3 591 54.3
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 5.7e-157 558.5 565 56.5
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.2e-156 556.6 568 55.8
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 1.8e-155 553.5 563 56.0
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.4e-155 553.1 571 55.0
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 1.5e-154 550.4 564 60.1
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 1.7e-153 547.0 566 58.5
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 3.8e-153 545.8 570 55.6
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 1.4e-152 543.9 575 59.0
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 5.5e-152 542.0 573 57.6
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 1.1e-149 534.3 593 53.6
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 2.2e-148 530.0 576 54.2
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 2.8e-148 529.6 573 55.0
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 1.8e-147 526.9 574 53.1
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 5.3e-147 525.4 515 57.7
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 9.1e-147 524.6 572 53.7
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 7.7e-146 521.5 562 57.1
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 1.4e-144 517.3 568 54.2
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.6e-143 513.8 566 57.4
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 2.1e-143 513.5 563 55.8
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 2.7e-143 513.1 569 54.3
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 4.7e-143 512.3 566 57.2
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 3.0e-142 509.6 534 54.7
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 3.9e-142 509.2 569 55.2
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 9.7e-141 504.6 589 52.0
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 1.3e-140 504.2 571 54.5
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 2.8e-140 503.1 569 54.5
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 1.4e-139 500.7 568 53.9
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 3.1e-139 499.6 569 54.3
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 4.1e-139 499.2 566 53.5
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 5.3e-139 498.8 594 51.2
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 1.2e-138 497.7 562 56.4
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 2.0e-138 496.9 578 51.0
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 8.5e-137 491.5 595 53.9
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 8.5e-137 491.5 533 55.5
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 1.9e-136 490.3 534 56.2
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 4.2e-136 489.2 560 53.2
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 1.3e-132 477.6 578 52.4
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 3.8e-129 466.1 551 51.2
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 2.5e-128 463.4 566 53.0
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 2.5e-128 463.4 566 53.0
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 7.2e-128 461.8 563 52.9
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 4.7e-127 459.1 563 50.1
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 6.1e-127 458.8 614 45.1
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 6.1e-127 458.8 614 45.1
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 9.7e-125 451.4 557 51.7
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 1.4e-123 447.6 573 50.6
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 4.1e-123 446.0 573 50.4
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 1.5e-109 401.0 590 44.2
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 1.0e-105 388.3 562 45.9
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 1.3e-105 387.9 557 49.0
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 1.9e-104 384.0 559 44.2
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 1.9e-104 384.0 566 49.3
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 7.3e-104 382.1 388 55.4
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 8.0e-103 378.6 573 46.6
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 3.7e-100 369.8 556 47.7
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 1.9e-96 357.5 366 54.6
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 1.9e-96 357.5 564 42.6
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.2e-95 354.8 309 62.8
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 2.3e-94 350.5 561 48.3
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 8.9e-94 348.6 596 45.0
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 4.3e-88 329.7 526 41.8
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 2.9e-76 290.4 234 69.7
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 4.6e-74 283.1 460 42.0
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.3e-68 265.0 629 33.7
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 6.6e-65 252.7 254 55.9
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 1.1e-64 251.9 451 38.6
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 9.9e-61 238.8 280 46.1
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 1.2e-58 231.9 514 37.4
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.8e-46 191.4 275 49.1
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 7.6e-45 186.0 161 58.4
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.8e-38 164.9 176 52.8
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 1.1e-35 155.6 148 56.8
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 5.1e-33 146.7 139 56.8
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 1.7e-31 141.7 420 29.8
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 5.0e-28 130.2 236 39.4
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 2.1e-26 124.8 180 55.0
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 1.8e-22 111.7 190 48.4
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 7.0e-22 109.8 101 58.4
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 1.5e-21 108.6 134 46.3
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 2.0e-21 108.2 91 68.1
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 3.5e-21 107.5 104 52.9
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.8e-20 104.0 143 46.9
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 4.7e-18 97.1 136 36.8
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.8e-17 95.1 86 62.8
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 1.5e-16 92.0 149 43.6
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 3.3e-16 90.9 290 27.2
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 9.7e-16 89.4 451 25.1
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 1.8e-14 85.1 439 25.1
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 4.5e-13 80.5 66 69.7
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.8e-12 77.4 120 46.7
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 5.0e-12 77.0 61 55.7
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 8.5e-12 76.3 69 52.2
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 7.2e-11 73.2 65 64.6
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.4e-06 58.2 52 65.4


User provided reference genes

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