Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 0.0e+00 1567.7 772 100.0
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 0.0e+00 1147.5 778 73.5
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 5.1e-297 1024.2 764 68.3
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 1.1e-294 1016.5 747 68.0
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 1.1e-294 1016.5 757 68.3
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 2.8e-263 912.1 751 62.3
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 3.8e-244 848.6 693 60.8
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 7.7e-237 824.3 782 55.9
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 2.1e-234 816.2 723 57.7
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 1.1e-232 810.4 779 56.2
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 9.1e-230 800.8 774 54.1
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 1.0e-225 787.3 775 52.4
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 3.4e-224 782.3 782 52.4
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 1.4e-222 776.9 782 51.8
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 5.4e-222 775.0 779 52.5
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.2e-221 773.9 759 53.1
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 4.5e-221 771.9 791 52.3
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 1.1e-219 767.3 779 53.0
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 6.1e-218 761.5 782 50.3
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 9.8e-216 754.2 759 52.2
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 6.3e-215 751.5 777 50.3
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 6.6e-212 741.5 786 49.6
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 5.6e-211 738.4 786 49.5
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 1.8e-209 733.4 783 48.0
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 6.8e-209 731.5 779 49.7
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.2e-208 730.7 709 53.5
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 1.5e-208 730.3 775 47.7
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 5.7e-208 728.4 777 49.3
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 2.2e-207 726.5 803 50.2
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.5e-203 713.8 776 49.0
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 6.8e-201 704.9 767 51.0
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 5.2e-193 678.7 782 46.8
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 8.3e-191 671.4 775 46.3
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 4.6e-189 665.6 779 45.6
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 6.0e-189 665.2 774 46.4
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 9.5e-187 657.9 776 46.3
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 4.7e-186 655.6 779 45.4
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 4.7e-186 655.6 780 46.3
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 4.7e-186 655.6 774 46.6
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 1.1e-185 654.4 773 45.9
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 6.8e-185 651.7 779 46.0
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 1.2e-184 651.0 765 47.1
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.7e-180 637.1 784 43.6
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 4.3e-179 632.5 782 45.0
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 1.6e-178 630.6 779 44.7
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 4.7e-178 629.0 792 44.4
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 2.4e-177 626.7 782 46.3
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 3.1e-177 626.3 664 52.3
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 5.2e-177 625.5 788 45.2
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 8.9e-177 624.8 777 43.5
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 2.9e-175 619.8 773 44.4
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 1.2e-173 614.4 776 44.7
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 3.5e-173 612.8 773 44.6
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 1.1e-169 601.3 779 44.2
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.3e-167 594.3 791 42.9
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 1.3e-167 594.3 781 42.8
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.9e-166 590.5 774 43.8
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 1.9e-166 590.5 783 43.3
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 3.2e-166 589.7 783 44.6
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 1.7e-164 583.9 781 42.6
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 3.9e-164 582.8 780 41.3
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 1.1e-163 581.3 783 44.1
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.1e-161 574.7 754 44.2
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 1.8e-161 573.9 771 42.9
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 5.3e-161 572.4 758 44.3
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 5.8e-160 568.9 777 40.9
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 9.9e-160 568.2 802 42.1
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 1.7e-159 567.4 540 53.7
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 8.4e-159 565.1 774 42.1
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 4.6e-157 559.3 787 41.3
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.3e-156 557.0 737 41.8
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 1.9e-155 553.9 710 42.5
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 1.6e-154 550.8 730 44.0
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.1e-153 548.1 602 49.7
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 2.4e-153 547.0 758 42.5
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.1e-147 528.1 775 40.3
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.1e-147 528.1 759 42.0
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 1.5e-147 527.7 754 39.0
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 4.8e-146 522.7 775 40.1
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 1.0e-143 515.0 778 39.2
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 8.4e-143 511.9 769 38.9
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 5.5e-142 509.2 787 39.4
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 1.9e-139 500.7 774 39.4
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 7.4e-139 498.8 778 38.0
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.2e-136 491.5 791 39.6
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 5.9e-136 489.2 749 37.8
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 2.3e-132 477.2 782 37.6
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 2.6e-131 473.8 780 37.3
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 9.7e-131 471.9 766 38.3
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 4.8e-130 469.5 782 37.2
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 4.5e-128 463.0 783 37.2
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 5.5e-126 456.1 737 39.5
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 5.5e-126 456.1 761 35.6
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 1.6e-125 454.5 334 63.5
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 2.4e-121 440.7 657 42.0
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 2.1e-109 401.0 409 51.8
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 3.0e-108 397.1 359 55.2
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 2.8e-106 390.6 563 41.0
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 5.5e-102 376.3 540 41.5
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 4.4e-99 366.7 646 37.0
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 2.7e-96 357.5 400 47.2
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.9e-94 351.3 757 33.4
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 9.5e-94 349.0 770 32.5
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 3.2e-89 334.0 724 35.2
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 5.6e-86 323.2 515 38.8
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 8.0e-85 319.3 718 32.7
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.4e-81 308.5 634 33.9
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 5.0e-79 300.1 735 32.2
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 2.1e-77 294.7 514 36.4
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.8e-77 294.3 289 51.6
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 4.1e-65 253.8 350 40.9
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 4.1e-65 253.8 726 29.3
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 7.1e-65 253.1 377 41.1
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.8e-61 241.1 454 35.2
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.4e-60 238.8 582 31.6
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.9e-60 236.5 446 36.1
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 7.3e-54 216.5 180 59.4
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 4.8e-53 213.8 294 45.6
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 8.1e-53 213.0 204 53.9
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 9.0e-52 209.5 468 34.4
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 1.7e-50 205.3 678 29.1
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 1.6e-48 198.7 285 40.7
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.3e-47 195.7 257 42.4
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 3.7e-45 187.6 330 36.4
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.4e-44 185.7 399 31.6
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 3.1e-44 184.5 399 31.3
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.4e-43 181.0 530 30.2
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 1.3e-34 152.5 306 29.7
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 1.3e-34 152.5 306 29.7
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 1.1e-33 149.4 225 37.8
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 4.3e-30 137.5 775 23.1
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.5e-27 129.0 375 30.7
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 1.5e-27 129.0 223 33.2
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.4e-27 127.9 376 30.9
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 5.9e-27 127.1 108 56.5
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.1e-22 112.8 211 34.1
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 4.3e-22 110.9 262 28.6
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 1.7e-18 99.0 282 27.7
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 1.6e-16 92.4 465 24.5
Oeu011014.1 Olea europaea HOM05D004345 ORTHO05D005192 3.7e-13 81.3 128 40.6
ATR0194G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.8e-13 80.9 321 28.7
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 4.8e-13 80.9 306 27.8
Oeu028553.1 Olea europaea HOM05D004345 ORTHO05D005192 2.4e-12 78.6 128 39.1
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 1.7e-10 72.4 426 22.8
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 5.0e-10 70.9 104 42.3
RcHm_v2.0_Chr6g0264731 Rosa chinensis HOM05D004345 ORTHO05D005192 6.5e-10 70.5 128 34.4
ATR0560G003 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.6e-08 64.7 178 32.0
BcaB06g25877 Brassica carinata HOM05D004345 ORTHO05D005192 8.8e-07 60.1 65 43.1
CDE09G0757 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 9.7e-06 56.6 120 31.7


User provided reference genes

Program Settings