Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030546 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.5e-133 479.6 252 100.0
CSS0029278 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 7.8e-130 467.2 252 92.9
CSS0008795 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.4e-126 456.4 252 91.3
CSS0030220 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.7e-121 439.5 252 94.0
vmacro09863 Vaccinium macrocarpon HOM05D007174 ORTHO05D009061 7.1e-99 364.4 252 74.2
Rhsim09G0195900 Rhododendron simsii HOM05D007174 ORTHO05D009061 3.9e-97 358.6 249 74.3
Dinv35170 Davidia involucrata HOM05D007174 ORTHO05D009061 6.4e-92 341.3 257 68.1
Dinv28496 Davidia involucrata HOM05D000059 ORTHO05D005093 3.4e-85 318.9 277 62.5
MSTRG.27141 Avicennia marina HOM05D007174 ORTHO05D009061 7.1e-83 311.2 253 61.3
QL09p015458 Quercus lobata HOM05D007174 ORTHO05D009061 4.3e-80 302.0 246 63.8
Lj1A990G55 Lonicera japonica HOM05D007174 ORTHO05D009061 8.2e-79 297.7 186 76.9
Manes.14G029900 Manihot esculenta HOM05D007174 ORTHO05D009061 1.4e-78 297.0 252 61.1
PGSC0003DMG400014262 Solanum tuberosum HOM05D007174 ORTHO05D009061 2.4e-78 296.2 247 61.1
Thecc.03G169500 Theobroma cacao HOM05D007174 ORTHO05D009061 2.4e-78 296.2 251 61.0
Prupe.2G289100 Prunus persica HOM05D007174 ORTHO05D009061 3.1e-78 295.8 250 62.4
HanXRQChr15g0473391 Helianthus annuus HOM05D000003 ORTHO05D000004 9.0e-78 294.3 188 75.0
DCAR_018153 Daucus carota HOM05D007174 ORTHO05D009061 1.2e-77 293.9 253 58.5
Nitab4.5_0008764g0010 Nicotiana tabacum HOM05D007174 ORTHO05D009061 3.4e-77 292.4 250 60.0
Sopen03g005220 Solanum pennellii HOM05D007174 ORTHO05D009061 3.4e-77 292.4 247 59.9
Lsat_1_v5_gn_9_53840 Lactuca sativa HOM05D007174 ORTHO05D009061 4.5e-77 292.0 247 61.1
Eucgr.K00215 Eucalyptus grandis HOM05D007174 ORTHO05D009061 1.0e-76 290.8 252 59.9
Peaxi162Scf00648g00220 Petunia axillaris HOM05D007174 ORTHO05D009061 1.0e-76 290.8 250 60.8
Potri.012G134500 Populus trichocarpa HOM05D007174 ORTHO05D009061 1.0e-76 290.8 251 60.6
Nitab4.5_0000832g0170 Nicotiana tabacum HOM05D007174 ORTHO05D009061 2.2e-76 289.7 250 60.0
MD01G1195800 Malus domestica HOM05D007174 ORTHO05D009061 5.0e-76 288.5 254 57.9
Ciclev10005753m.g Citrus clementina HOM05D007174 ORTHO05D009061 6.5e-76 288.1 248 61.7
TAR374G0585 Trochodendron aralioides HOM05D007174 ORTHO05D009061 6.5e-76 288.1 249 61.0
Nn1g01328 Nelumbo nucifera HOM05D007174 ORTHO05D009061 8.5e-76 287.7 260 59.2
FAN06G1461 Fragaria x ananassa HOM05D000059 ORTHO05D005093 4.2e-75 285.4 250 60.4
CAN.G548.22 Capsicum annuum HOM05D007174 ORTHO05D009061 5.5e-75 285.0 250 58.4
Glyma.16G199500 Glycine max HOM05D007174 ORTHO05D009061 7.2e-75 284.6 192 70.8
GSVIVG01010637001 Vitis vinifera HOM05D007174 ORTHO05D009061 9.4e-75 284.3 249 59.4
FvH4_7g28911 Fragaria vesca HOM05D007174 ORTHO05D009061 1.2e-74 283.9 250 60.4
Duzib205G1938 Durio zibethinus HOM05D007174 ORTHO05D009061 2.7e-74 282.7 251 59.4
Sed0014335 Sechium edule HOM05D002642 ORTHO05D002834 3.6e-74 282.3 248 60.5
Migut.F00385 Erythranthe guttata HOM05D007174 ORTHO05D009061 4.6e-74 282.0 197 70.6
CiPaw.04G068400 Carya illinoinensis HOM05D007174 ORTHO05D009061 7.9e-74 281.2 258 57.8
Sabra12G0101100 Salix brachista HOM05D007174 ORTHO05D009061 7.9e-74 281.2 251 60.2
Gorai.008G280800 Gossypium raimondii HOM05D007174 ORTHO05D009061 2.3e-73 279.6 198 68.7
Lj2g0011010 Lotus japonicus HOM05D007174 ORTHO05D009061 3.0e-73 279.3 191 70.2
Cpa.g.sc3.335 Carica papaya HOM05D007174 ORTHO05D009061 6.7e-73 278.1 194 71.6
Medtr6g465290 Medicago truncatula HOM05D007174 ORTHO05D009061 6.7e-73 278.1 191 72.3
ClCG05G007760 Citrullus lanatus HOM05D002642 ORTHO05D002834 1.1e-72 277.3 246 57.7
COL.COLO4_14250 Corchorus olitorius HOM05D000059 ORTHO05D005093 1.1e-72 277.3 190 71.6
Lj6g0017578 Lotus japonicus HOM05D007174 ORTHO05D009061 1.1e-72 277.3 191 70.2
MBI04_g40843_MAGBIO Magnolia biondii HOM05D007174 ORTHO05D009061 1.5e-72 276.9 255 56.1
Psat1g105240 Pisum sativum HOM05D007174 ORTHO05D009061 1.5e-72 276.9 242 59.1
Gohir.A12G261100 Gossypium hirsutum HOM05D007174 ORTHO05D009061 2.0e-72 276.6 198 67.7
FAN03G3394 Fragaria x ananassa HOM05D000059 ORTHO05D005093 3.3e-72 275.8 250 58.4
PGR142G4376 Punica granatum HOM05D007174 ORTHO05D009061 4.3e-72 275.4 253 57.3
arahy.Tifrunner.gnm1.ann1.CGP099 Arachis hypogaea HOM05D007174 ORTHO05D009061 5.7e-72 275.0 187 70.6
FAN01G2691 Fragaria x ananassa HOM05D000059 ORTHO05D005093 5.7e-72 275.0 198 68.2
Glyma.09G147500 Glycine max HOM05D007174 ORTHO05D009061 5.7e-72 275.0 188 71.3
TPR.G9185 Trifolium pratense HOM05D007174 ORTHO05D009061 5.7e-72 275.0 191 70.7
MELO3C006867.2 Cucumis melo HOM05D007174 ORTHO05D009061 7.4e-72 274.6 246 56.1
Lalb_Chr19g0131081 Lupinus albus HOM05D007174 ORTHO05D009061 1.3e-71 273.9 187 70.1
Phvul.004G122400 Phaseolus vulgaris HOM05D007174 ORTHO05D009061 1.7e-71 273.5 191 68.6
RcHm_v2.0_Chr1g0376581 Rosa chinensis HOM05D007174 ORTHO05D009061 1.7e-71 273.5 249 58.6
TWI23G0481 Tripterygium wilfordii HOM05D007174 ORTHO05D009061 1.7e-71 273.5 249 58.2
arahy.Tifrunner.gnm1.ann1.AW02WS Arachis hypogaea HOM05D007174 ORTHO05D009061 2.8e-71 272.7 187 70.1
FAN03G1635 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.8e-71 272.7 198 68.2
FAN10G2932 Fragaria x ananassa HOM05D000059 ORTHO05D005093 3.7e-71 272.3 250 58.0
Aqoxy7G00468 Aquilegia oxysepala HOM05D007174 ORTHO05D009061 8.2e-71 271.2 250 56.4
CsaV3_3G016740 Cucumis sativus L. HOM05D007174 ORTHO05D009061 2.4e-70 269.6 246 54.5
VMungo0464G0116 Vigna mungo HOM05D007174 ORTHO05D009061 3.1e-70 269.2 254 56.7
AUR62016040 Chenopodium quinoa HOM05D007174 ORTHO05D009061 6.9e-70 268.1 236 57.6
Haze_13772 Corylus avellana HOM05D007174 ORTHO05D009061 9.1e-70 267.7 252 56.0
SalBow4G1508 Salvia bowleyana HOM05D007174 ORTHO05D009061 1.2e-69 267.3 259 56.0
Cc02_g03460 Coffea canephora HOM05D007174 ORTHO05D009061 4.5e-69 265.4 256 55.1
Actinidia03101 Actinidia chinensis HOM05D007174 ORTHO05D009061 7.7e-69 264.6 172 78.5
Atru.chr1.537 Acer truncatum HOM05D007174 ORTHO05D009061 1.0e-68 264.2 184 70.1
EL10Ac3g05680 Beta vulgaris HOM05D007174 ORTHO05D009061 1.3e-68 263.8 181 69.1
CANSAT21G1580 Cannabis sativa HOM05D007174 ORTHO05D009061 2.9e-68 262.7 192 67.7
Zm00001eb187200 Zea mays HOM05D007174 ORTHO05D009061 6.1e-66 255.0 192 63.5
ATR0757G135 Amborella trichopoda HOM05D007174 ORTHO05D009061 7.9e-66 254.6 196 63.3
SGA_v2.0_scaffold2G01087 Striga asiatica HOM05D007174 ORTHO05D009061 3.7e-63 245.7 250 53.6
Os02g0677600 Oryza sativa ssp. japonica HOM05D007174 ORTHO05D009061 2.4e-62 243.0 191 61.3
THA.LOC104826810 Tarenaya hassleriana HOM05D007174 ORTHO05D009061 2.0e-61 240.0 189 64.6
Sc25g0000350 Simmondsia chinensis HOM05D007174 ORTHO05D009061 7.7e-61 238.0 253 50.6
AT5G62140 Arabidopsis thaliana HOM05D007174 ORTHO05D009061 1.4e-59 233.8 229 55.0
arahy.Tifrunner.gnm1.ann1.09T8EW Arachis hypogaea HOM05D007174 ORTHO05D009061 3.2e-59 232.6 189 62.4
BcaB07g29797 Brassica carinata HOM05D007174 ORTHO05D009061 4.2e-59 232.3 196 60.7
Carub.0008s2281 Capsella rubella HOM05D007174 ORTHO05D009061 4.2e-59 232.3 222 55.9
BolC2t12246H Brassica oleracea HOM05D007174 ORTHO05D009061 9.4e-59 231.1 196 60.7
A02p42000 Brassica napus HOM05D007174 ORTHO05D009061 6.1e-58 228.4 197 58.9
BraA02t09135Z Brassica rapa HOM05D007174 ORTHO05D009061 6.1e-58 228.4 197 58.9
AL8G38920 Arabidopsis lyrata HOM05D007174 ORTHO05D009061 1.4e-57 227.3 229 53.3
BcaC03g18123 Brassica carinata HOM05D007174 ORTHO05D009061 1.8e-57 226.9 196 60.2
Thhalv10004841m.g Eutrema salsugineum HOM05D007174 ORTHO05D009061 2.3e-57 226.5 187 60.4
Sp2g25310 Schrenkiella parvula HOM05D007174 ORTHO05D009061 6.7e-57 224.9 190 61.1
Oeu030133.1 Olea europaea HOM05D007174 ORTHO05D009061 1.7e-55 220.3 144 72.2
CARHR275910 Cardamine hirsuta HOM05D007174 ORTHO05D009061 3.7e-55 219.2 186 59.7
ECA232G4749 Erigeron canadensis HOM05D007174 ORTHO05D009061 6.3e-55 218.4 150 70.7
arahy.Tifrunner.gnm1.ann1.JY00AE Arachis hypogaea HOM05D007174 ORTHO05D009061 2.0e-53 213.4 192 57.8
Mapoly0145s0018 Marchantia polymorpha HOM05D007174 ORTHO05D009061 1.3e-52 210.7 180 55.6
SEGI_06842 Sequoiadendron giganteum HOM05D007174 ORTHO05D009061 2.9e-52 209.5 189 54.0
Sc13g0008390 Simmondsia chinensis HOM05D007174 ORTHO05D009061 6.1e-50 201.8 246 45.9
AagrBONN_evm.TU.Sc2ySwM_228.5753 Anthoceros agrestis HOM05D007174 ORTHO05D009061 3.0e-49 199.5 180 52.8
Pp3c13_6960 Physcomitrium patens HOM05D007174 ORTHO05D009061 3.4e-48 196.1 183 53.0
Gohir.D12G262000 Gossypium hirsutum HOM05D007174 ORTHO05D009061 1.7e-44 183.7 198 51.0
unitig_747.g21761 Utricularia gibba HOM05D007174 ORTHO05D009061 1.7e-44 183.7 204 50.0
SMO137G0111 Selaginella moellendorffii HOM05D007174 ORTHO05D009061 5.0e-44 182.2 182 48.4
CBR_g53539 Chara braunii HOM05D007174 ORTHO05D009061 1.2e-42 177.6 190 46.8
Pp3c4_22170 Physcomitrium patens HOM05D007174 ORTHO05D009061 2.3e-41 173.3 182 47.3
EL10Ac3g05682 Beta vulgaris HOM05D007174 ORTHO05D009061 3.4e-40 169.5 215 43.7
Sc13g0008380 Simmondsia chinensis HOM05D007174 ORTHO05D009061 1.5e-35 154.1 258 36.0
Solyc03g026330.4 Solanum lycopersicum HOM05D007174 ORTHO05D009061 2.1e-34 150.2 154 50.6
HanXRQChr15g0482681 Helianthus annuus HOM05D007174 ORTHO05D009061 2.3e-33 146.7 148 55.4
arahy.Tifrunner.gnm1.ann1.U0QS20 Arachis hypogaea HOM05D007174 ORTHO05D009061 7.5e-32 141.7 192 45.8
AUR62021246 Chenopodium quinoa HOM05D007174 ORTHO05D009061 1.0e-28 131.3 87 73.6
Cre01.g019600 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 2.1e-26 123.6 189 39.2
arahy.Tifrunner.gnm1.ann1.BIF85U Arachis hypogaea HOM05D007174 ORTHO05D009061 2.0e-24 117.1 86 64.0
CDE01G0613 Ceratophyllum demersum HOM05D007174 ORTHO05D009061 6.0e-21 105.5 161 38.5
Aa31LG11G1430 Aethionema arabicum HOM05D007174 ORTHO05D009061 1.2e-16 91.3 67 64.2
Pp3c26_1960 Physcomitrium patens HOM05D007174 ORTHO05D009061 1.3e-15 87.8 97 44.3
MCO06G097 Micromonas commoda HOM05D007174 ORTHO05D009061 1.4e-14 84.3 128 39.8
SEGI_30770 Sequoiadendron giganteum HOM05D000501 ORTHO05D009061 2.8e-10 70.1 78 51.3
Cre10.g463800 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 2.9e-07 60.1 191 28.8
Oeu004139.1 Olea europaea HOM05D007174 ORTHO05D009061 4.9e-07 59.3 91 38.5
arahy.Tifrunner.gnm1.ann1.3M52EB Arachis hypogaea HOM05D007174 ORTHO05D010441 3.2e-06 56.6 62 50.0


User provided reference genes

Program Settings