Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030493 Camellia sinensis var. sinensis HOM05D005435 ORTHO05D007370 6.4e-60 233.8 112 100.0
CSS0000486 Camellia sinensis var. sinensis HOM05D005435 ORTHO05D007370 1.2e-37 159.8 90 90.0
Peaxi162Scf00454g00414 Petunia axillaris HOM05D005435 ORTHO05D007370 1.2e-34 149.8 86 83.7
Rhsim12G0137200 Rhododendron simsii HOM05D005435 ORTHO05D007370 1.2e-34 149.8 90 84.4
Actinidia33394 Actinidia chinensis HOM05D005435 ORTHO05D007370 3.6e-34 148.3 96 78.1
Dinv03347 Davidia involucrata HOM05D005435 ORTHO05D007370 1.0e-33 146.7 90 84.4
RcHm_v2.0_Chr3g0470291 Rosa chinensis HOM05D005435 ORTHO05D007370 1.8e-33 146.0 94 79.8
FAN16G2384 Fragaria x ananassa HOM05D005435 ORTHO05D007370 2.3e-33 145.6 94 78.7
FAN21G2931 Fragaria x ananassa HOM05D005435 ORTHO05D007370 2.3e-33 145.6 94 78.7
FAN25G0236 Fragaria x ananassa HOM05D005435 ORTHO05D007370 2.3e-33 145.6 94 78.7
Oeu022974.1 Olea europaea HOM05D005435 ORTHO05D007370 2.3e-33 145.6 96 76.0
Hund20359 Selenicereus undatus HOM05D005435 ORTHO05D007370 2.3e-33 145.6 94 78.7
Manes.08G010700 Manihot esculenta HOM05D005435 ORTHO05D007370 3.9e-33 144.8 90 80.0
Aqoxy2G01759 Aquilegia oxysepala HOM05D005435 ORTHO05D007370 6.7e-33 144.1 96 76.0
HanXRQChr14g0454441 Helianthus annuus HOM05D005435 ORTHO05D007370 6.7e-33 144.1 90 81.1
CAN.G1425.24 Capsicum annuum HOM05D005435 ORTHO05D007370 1.1e-32 143.3 90 78.9
Dinv29101 Davidia involucrata HOM05D002509 ORTHO05D002758 1.1e-32 143.3 90 82.2
Dinv29103 Davidia involucrata HOM05D005435 ORTHO05D007370 1.1e-32 143.3 90 82.2
Lj3C986G3 Lonicera japonica HOM05D005435 ORTHO05D007370 1.5e-32 142.9 94 77.7
Nitab4.5_0008233g0020 Nicotiana tabacum HOM05D005435 ORTHO05D007370 1.5e-32 142.9 90 80.0
PGSC0003DMG400005646 Solanum tuberosum HOM05D005435 ORTHO05D007370 1.5e-32 142.9 90 80.0
MELO3C024475.2 Cucumis melo HOM05D005435 ORTHO05D007370 2.0e-32 142.5 90 80.0
CsaV3_6G039980 Cucumis sativus L. HOM05D005435 ORTHO05D007370 2.0e-32 142.5 90 80.0
Eucgr.K02931 Eucalyptus grandis HOM05D005435 ORTHO05D007370 2.0e-32 142.5 94 76.6
FvH4_3g29130 Fragaria vesca HOM05D005435 ORTHO05D007370 2.0e-32 142.5 94 77.7
FAN11G0495 Fragaria x ananassa HOM05D005435 ORTHO05D007370 2.0e-32 142.5 94 77.7
Sopen03g038160 Solanum pennellii HOM05D005435 ORTHO05D007370 2.0e-32 142.5 90 78.9
TWI53G0628 Tripterygium wilfordii HOM05D005435 ORTHO05D007370 2.6e-32 142.1 90 78.9
Haze_20541 Corylus avellana HOM05D005435 ORTHO05D007370 3.3e-32 141.7 94 76.6
Nitab4.5_0003433g0040 Nicotiana tabacum HOM05D005435 ORTHO05D007370 3.3e-32 141.7 90 78.9
PGR142G0097 Punica granatum HOM05D005435 ORTHO05D007370 3.3e-32 141.7 90 78.9
AL6G12730 Arabidopsis lyrata HOM05D005435 ORTHO05D007370 4.4e-32 141.4 94 74.5
MSTRG.10790 Avicennia marina HOM05D005435 ORTHO05D007370 4.4e-32 141.4 94 75.5
Carub.0005s1195 Capsella rubella HOM05D005435 ORTHO05D007370 4.4e-32 141.4 94 74.5
ECA238G1020 Erigeron canadensis HOM05D005435 ORTHO05D007370 7.4e-32 140.6 90 78.9
Nn2g13788 Nelumbo nucifera HOM05D002509 ORTHO05D002758 7.4e-32 140.6 90 77.8
Prupe.6G232000 Prunus persica HOM05D005435 ORTHO05D007370 7.4e-32 140.6 90 81.1
Sp7g12050 Schrenkiella parvula HOM05D005435 ORTHO05D007370 7.4e-32 140.6 94 74.5
Sed0000088 Sechium edule HOM05D005435 ORTHO05D007370 7.4e-32 140.6 90 78.9
GSVIVG01025735001 Vitis vinifera HOM05D005435 ORTHO05D007370 7.4e-32 140.6 94 77.7
Cc06_g19340 Coffea canephora HOM05D005435 ORTHO05D007370 9.7e-32 140.2 90 78.9
MD04G1093200 Malus domestica HOM05D005435 ORTHO05D007370 9.7e-32 140.2 90 80.0
AT3G46100 Arabidopsis thaliana HOM05D005435 ORTHO05D007370 1.3e-31 139.8 94 73.4
Potri.006G124400 Populus trichocarpa HOM05D005435 ORTHO05D007370 1.3e-31 139.8 94 75.5
Sabra06G0098400 Salix brachista HOM05D005435 ORTHO05D007370 1.3e-31 139.8 94 74.5
Solyc03g119280.3 Solanum lycopersicum HOM05D005435 ORTHO05D007370 1.3e-31 139.8 90 77.8
AUR62038499 Chenopodium quinoa HOM05D005435 ORTHO05D007370 1.7e-31 139.4 94 73.4
TAR633G1880 Trochodendron aralioides HOM05D005435 ORTHO05D007370 1.7e-31 139.4 90 78.9
Aa31LG1G21750 Aethionema arabicum HOM05D005435 ORTHO05D007370 2.2e-31 139.0 94 73.4
AL5G24810 Arabidopsis lyrata HOM05D005435 ORTHO05D007370 2.2e-31 139.0 90 76.7
Cpa.g.c35476 Carica papaya HOM05D005435 ORTHO05D007370 2.2e-31 139.0 90 78.9
Cfa017616 Carpinus fangiana HOM05D005435 ORTHO05D007370 2.2e-31 139.0 94 74.5
AUR62014241 Chenopodium quinoa HOM05D005435 ORTHO05D007370 2.8e-31 138.7 94 72.3
Duzib093G0272 Durio zibethinus HOM05D005435 ORTHO05D007370 4.8e-31 137.9 94 73.4
Migut.J01655 Erythranthe guttata HOM05D005435 ORTHO05D007370 4.8e-31 137.9 90 76.7
THA.LOC104826914 Tarenaya hassleriana HOM05D005435 ORTHO05D007370 4.8e-31 137.9 90 76.7
MD12G1112900 Malus domestica HOM05D005435 ORTHO05D007370 6.3e-31 137.5 90 80.0
CARHR209940 Cardamine hirsuta HOM05D005435 ORTHO05D007370 8.2e-31 137.1 94 71.3
CiPaw.09G172100 Carya illinoinensis HOM05D005435 ORTHO05D007370 8.2e-31 137.1 94 74.5
Gohir.A01G141700 Gossypium hirsutum HOM05D005435 ORTHO05D007370 1.1e-30 136.7 94 73.4
Gorai.002G161900 Gossypium raimondii HOM05D005435 ORTHO05D007370 1.1e-30 136.7 94 73.4
SGA_v2.0_scaffold105G30289 Striga asiatica HOM05D005435 ORTHO05D007370 1.1e-30 136.7 90 76.7
Atru.chr8.1802 Acer truncatum HOM05D005435 ORTHO05D007370 1.4e-30 136.3 89 77.5
DCAR_017682 Daucus carota HOM05D005435 ORTHO05D007370 1.8e-30 136.0 90 76.7
Thecc.05G067100 Theobroma cacao HOM05D005435 ORTHO05D007370 1.8e-30 136.0 94 74.5
EL10Ac7g16635 Beta vulgaris HOM05D005435 ORTHO05D007370 3.1e-30 135.2 94 71.3
BcaC01g00217 Brassica carinata HOM05D005435 ORTHO05D007370 3.1e-30 135.2 94 71.3
A08p24260 Brassica napus HOM05D005435 ORTHO05D007370 3.1e-30 135.2 94 71.3
C03p77020 Brassica napus HOM05D005435 ORTHO05D007370 3.1e-30 135.2 94 71.3
BraA08t34381Z Brassica rapa HOM05D005435 ORTHO05D007370 3.1e-30 135.2 94 71.3
CANSAT80G1523 Cannabis sativa HOM05D005435 ORTHO05D007370 3.1e-30 135.2 90 76.7
Gohir.D01G130500 Gossypium hirsutum HOM05D005435 ORTHO05D007370 3.1e-30 135.2 94 72.3
PSO017G6300 Papaver somniferum HOM05D005435 ORTHO05D007370 3.1e-30 135.2 90 75.6
QL07p043246 Quercus lobata HOM05D005435 ORTHO05D007370 3.1e-30 135.2 94 71.3
Sc20g0005470 Simmondsia chinensis HOM05D005435 ORTHO05D007370 4.1e-30 134.8 90 76.7
BcaNung05574 Brassica carinata HOM05D005435 ORTHO05D007370 5.3e-30 134.4 94 71.3
vmacro16401 Vaccinium macrocarpon HOM05D005435 ORTHO05D007370 5.3e-30 134.4 130 58.5
Lsat_1_v5_gn_2_123940 Lactuca sativa HOM05D005435 ORTHO05D007370 6.9e-30 134.0 90 74.4
PSO063G1591 Papaver somniferum HOM05D005435 ORTHO05D007370 9.1e-30 133.7 90 74.4
Manes.09G066100 Manihot esculenta HOM05D005435 ORTHO05D007370 3.4e-29 131.7 90 76.7
BolC3t19955H Brassica oleracea HOM05D005435 ORTHO05D007370 5.9e-29 131.0 94 70.2
Lalb_Chr01g0018691 Lupinus albus HOM05D005435 ORTHO05D007370 5.9e-29 131.0 94 71.3
SalBow6G0607 Salvia bowleyana HOM05D005435 ORTHO05D007370 7.7e-29 130.6 90 71.1
TPR.G32806 Trifolium pratense HOM05D005435 ORTHO05D007370 7.7e-29 130.6 94 71.3
Ca_08861_v3 Cicer arietinum L. HOM05D005435 ORTHO05D007370 1.0e-28 130.2 94 70.2
Medtr7g101940 Medicago truncatula HOM05D005435 ORTHO05D007370 1.0e-28 130.2 94 70.2
ClCG04G009400 Citrullus lanatus HOM05D005435 ORTHO05D007370 1.3e-28 129.8 112 61.6
Psat3g042640 Pisum sativum HOM05D005435 ORTHO05D007370 2.2e-28 129.0 94 67.0
Lj1g0010500 Lotus japonicus HOM05D005435 ORTHO05D007370 5.0e-28 127.9 94 68.1
arahy.Tifrunner.gnm1.ann1.3ZC2I8 Arachis hypogaea HOM05D005435 ORTHO05D007370 1.4e-27 126.3 94 67.0
Phvul.001G179200 Phaseolus vulgaris HOM05D005435 ORTHO05D007370 1.4e-27 126.3 94 68.1
CDE10G0836 Ceratophyllum demersum HOM05D005435 ORTHO05D007370 5.5e-27 124.4 96 64.6
VMungo1383G0425 Vigna mungo HOM05D005435 ORTHO05D007370 5.5e-27 124.4 94 68.1
arahy.Tifrunner.gnm1.ann1.2UY3HI Arachis hypogaea HOM05D005435 ORTHO05D007370 9.4e-27 123.6 104 61.5
ATR1132G102 Amborella trichopoda HOM05D005435 ORTHO05D007370 2.7e-26 122.1 90 68.9
unitig_899.g15642 Utricularia gibba HOM05D005435 ORTHO05D007370 2.7e-26 122.1 86 70.9
Zm00001eb122020 Zea mays HOM05D005435 ORTHO05D007370 6.7e-25 117.5 89 64.0
Os02g0754700 Oryza sativa ssp. japonica HOM05D005435 ORTHO05D007370 1.5e-24 116.3 89 64.0
HPP92_007175 Vanilla planifolia HOM05D005435 ORTHO05D007370 2.6e-24 115.5 89 65.2
AagrBONN_evm.TU.Sc2ySwM_117.1380 Anthoceros agrestis HOM05D005435 ORTHO05D007370 2.8e-23 112.1 93 59.1
Pp3c1_6360 Physcomitrium patens HOM05D005435 ORTHO05D007370 2.6e-21 105.5 99 55.6
Pp3c7_24050 Physcomitrium patens HOM05D005435 ORTHO05D007370 5.0e-20 101.3 98 54.1
CBR_g45330 Chara braunii HOM05D005435 ORTHO05D007370 2.5e-19 99.0 93 55.9
MCO02G110 Micromonas commoda HOM05D005435 ORTHO05D007370 3.0e-17 92.0 91 49.5
SMO201G0114 Selaginella moellendorffii HOM05D000113 ORTHO05D001108 4.0e-17 91.7 89 51.7
SMO268G0040 Selaginella moellendorffii HOM05D005435 ORTHO05D007370 4.0e-17 91.7 89 51.7
MCO12G364 Micromonas commoda HOM05D005435 ORTHO05D007370 1.2e-16 90.1 101 48.5
Ah.08g211610 Amaranthus hybridus HOM05D005435 ORTHO05D007370 3.3e-16 88.6 122 45.1
SEGI_19136 Sequoiadendron giganteum HOM05D005435 ORTHO05D007370 1.7e-15 86.3 48 83.3
PRCOL_00000347 Prasinoderma coloniale HOM05D005435 ORTHO05D007370 5.3e-14 81.3 90 45.6
PRCOL_00003807 Prasinoderma coloniale HOM05D005435 ORTHO05D007370 9.4e-11 70.5 93 44.1
Mapoly0059s0001 Marchantia polymorpha HOM05D005435 ORTHO05D007370 1.2e-10 70.1 43 76.7
C04p41650 Brassica napus HOM05D005435 ORTHO05D042799 6.1e-10 67.8 50 62.0
BolC4t25744H Brassica oleracea HOM05D005435 ORTHO05D042799 6.1e-10 67.8 50 62.0
Cpa.g.sc738.3 Carica papaya HOM05D005435 ORTHO05D007370 1.4e-09 66.6 46 71.7
Mapoly0007s0136 Marchantia polymorpha HOM05D005435 ORTHO05D007370 1.4e-09 66.6 43 74.4
CAN.G869.5 Capsicum annuum HOM05D005435 ORTHO05D017747 4.4e-08 61.6 46 65.2
arahy.Tifrunner.gnm1.ann1.FR68MS Arachis hypogaea HOM05D005435 ORTHO05D005134 5.7e-08 61.2 63 55.6
Glyma.03G183400 Glycine max HOM05D005435 ORTHO05D007370 5.7e-08 61.2 50 58.0
FAN02G1152 Fragaria x ananassa HOM05D018720 ORTHO05D208508 1.4e-06 56.6 80 40.0
FvH4_6g16420 Fragaria vesca HOM05D018720 ORTHO05D035658 7.0e-06 54.3 68 42.6


User provided reference genes

Program Settings