Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030492 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 3.8e-38 161.0 80 100.0
CSS0035330 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 1.7e-25 119.0 61 95.1
CSS0043412 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 1.7e-25 119.0 61 95.1
Lj1A1123G21 Lonicera japonica HOM05D004475 ORTHO05D005235 7.2e-21 103.6 56 83.9
Rhsim03G0029800 Rhododendron simsii HOM05D004475 ORTHO05D005235 1.2e-20 102.8 61 85.2
vmacro21959 Vaccinium macrocarpon HOM05D004475 ORTHO05D005235 1.2e-20 102.8 61 83.6
FAN06G2315 Fragaria x ananassa HOM05D004475 ORTHO05D005235 2.7e-20 101.7 60 78.3
FAN06G2651 Fragaria x ananassa HOM05D004475 ORTHO05D005235 2.7e-20 101.7 60 78.3
QL02p076199 Quercus lobata HOM05D004475 ORTHO05D005235 3.6e-20 101.3 54 83.3
QL07p004070 Quercus lobata HOM05D004475 ORTHO05D005235 3.6e-20 101.3 54 83.3
Thecc.04G085100 Theobroma cacao HOM05D004475 ORTHO05D005235 6.1e-20 100.5 55 83.6
RcHm_v2.0_Chr1g0351831 Rosa chinensis HOM05D004475 ORTHO05D005235 7.9e-20 100.1 60 76.7
CANSAT80G2630 Cannabis sativa HOM05D004475 ORTHO05D005235 1.0e-19 99.8 55 83.6
FvH4_7g12800 Fragaria vesca HOM05D004475 ORTHO05D005235 1.0e-19 99.8 60 76.7
QL07p004140 Quercus lobata HOM05D004475 ORTHO05D005235 1.0e-19 99.8 54 81.5
Peaxi162Scf00130g00932 Petunia axillaris HOM05D004475 ORTHO05D005235 1.4e-19 99.4 61 77.0
CAN.G1237.9 Capsicum annuum HOM05D004475 ORTHO05D005235 1.8e-19 99.0 60 78.3
Peaxi162Scf00002g00359 Petunia axillaris HOM05D004475 ORTHO05D005235 2.3e-19 98.6 61 75.4
CiPaw.10G036200 Carya illinoinensis HOM05D004475 ORTHO05D005235 3.0e-19 98.2 60 73.3
Prupe.2G152500 Prunus persica HOM05D004475 ORTHO05D005235 3.0e-19 98.2 60 78.3
Migut.J01712 Erythranthe guttata HOM05D004475 ORTHO05D005235 3.9e-19 97.8 60 76.7
CAN.G641.30 Capsicum annuum HOM05D004475 ORTHO05D005235 5.1e-19 97.4 56 78.6
Actinidia38137 Actinidia chinensis HOM05D004475 ORTHO05D005235 6.7e-19 97.1 61 77.0
FAN10G0874 Fragaria x ananassa HOM05D004475 ORTHO05D005235 8.8e-19 96.7 60 73.3
GSVIVG01005040001 Vitis vinifera HOM05D004475 ORTHO05D005235 8.8e-19 96.7 55 76.4
PGSC0003DMG400008171 Solanum tuberosum HOM05D004475 ORTHO05D005235 1.1e-18 96.3 55 78.2
Cfa016767 Carpinus fangiana HOM05D004475 ORTHO05D005235 2.0e-18 95.5 55 76.4
Haze_19778 Corylus avellana HOM05D004475 ORTHO05D005235 2.0e-18 95.5 55 76.4
Nitab4.5_0010656g0010 Nicotiana tabacum HOM05D004475 ORTHO05D005235 2.0e-18 95.5 61 75.4
Solyc10g079260.2 Solanum lycopersicum HOM05D004475 ORTHO05D005235 2.0e-18 95.5 55 78.2
Sopen10g029910 Solanum pennellii HOM05D004475 ORTHO05D005235 2.0e-18 95.5 55 78.2
COL.COLO4_31106 Corchorus olitorius HOM05D004475 ORTHO05D005235 3.3e-18 94.7 55 76.4
Nitab4.5_0001618g0210 Nicotiana tabacum HOM05D004475 ORTHO05D005235 3.3e-18 94.7 61 72.1
Dinv18682 Davidia involucrata HOM05D004475 ORTHO05D005235 4.4e-18 94.4 61 72.1
Nitab4.5_0000826g0170 Nicotiana tabacum HOM05D004475 ORTHO05D005235 4.4e-18 94.4 53 79.2
Oeu008174.1 Olea europaea HOM05D004475 ORTHO05D005235 4.4e-18 94.4 61 70.5
Solyc04g016440.4 Solanum lycopersicum HOM05D004475 ORTHO05D005235 4.4e-18 94.4 61 73.8
Sopen04g008540 Solanum pennellii HOM05D004475 ORTHO05D005235 4.4e-18 94.4 61 73.8
PGSC0003DMG400012719 Solanum tuberosum HOM05D004475 ORTHO05D005235 4.4e-18 94.4 61 73.8
Manes.09G010600 Manihot esculenta HOM05D004475 ORTHO05D005235 5.7e-18 94.0 57 73.7
DCAR_013617 Daucus carota HOM05D004475 ORTHO05D005235 7.4e-18 93.6 60 71.7
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 7.4e-18 93.6 54 75.9
AT3G57280 Arabidopsis thaliana HOM05D004475 ORTHO05D005235 9.7e-18 93.2 60 70.0
Potri.003G094300 Populus trichocarpa HOM05D004475 ORTHO05D005235 1.3e-17 92.8 61 70.5
Eucgr.A02304 Eucalyptus grandis HOM05D004475 ORTHO05D005235 1.7e-17 92.4 56 73.2
Lj2A388T27 Lonicera japonica HOM05D004475 ORTHO05D005235 1.7e-17 92.4 61 70.5
MBI07_g06431_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D000022 1.7e-17 92.4 52 80.8
FAN01G1920 Fragaria x ananassa HOM05D004475 ORTHO05D005235 2.2e-17 92.0 60 71.7
Nitab4.5_0000082g0290 Nicotiana tabacum HOM05D004475 ORTHO05D005235 2.2e-17 92.0 61 75.4
Sabra03G0063400 Salix brachista HOM05D004475 ORTHO05D005235 2.2e-17 92.0 57 70.2
THA.LOC104824427 Tarenaya hassleriana HOM05D004475 ORTHO05D005235 2.2e-17 92.0 58 72.4
AL5G38770 Arabidopsis lyrata HOM05D004475 ORTHO05D005235 4.8e-17 90.9 60 66.7
A09p50200 Brassica napus HOM05D004475 ORTHO05D005235 4.8e-17 90.9 56 71.4
BraA09t40470Z Brassica rapa HOM05D004475 ORTHO05D005235 4.8e-17 90.9 56 71.4
C08p32680 Brassica napus HOM05D004475 ORTHO05D005235 6.3e-17 90.5 56 71.4
Sp5g05320 Schrenkiella parvula HOM05D004475 ORTHO05D005235 6.3e-17 90.5 56 71.4
MBI05_g34359_MAGBIO Magnolia biondii HOM05D004475 ORTHO05D005235 8.2e-17 90.1 60 70.0
BcaC07g40061 Brassica carinata HOM05D004475 ORTHO05D005235 1.1e-16 89.7 56 69.6
BraA07t29998Z Brassica rapa HOM05D004475 ORTHO05D005235 1.1e-16 89.7 55 70.9
ECA240G3656 Erigeron canadensis HOM05D004475 ORTHO05D005235 1.1e-16 89.7 60 70.0
Potri.001G139800 Populus trichocarpa HOM05D004475 ORTHO05D005235 1.1e-16 89.7 56 69.6
Thhalv10006224m.g Eutrema salsugineum HOM05D004475 ORTHO05D005235 1.4e-16 89.4 56 71.4
BcaC08g44832 Brassica carinata HOM05D004475 ORTHO05D005235 1.8e-16 89.0 55 70.9
C06p24380 Brassica napus HOM05D004475 ORTHO05D005235 1.8e-16 89.0 55 70.9
HanXRQChr01g0008311 Helianthus annuus HOM05D004475 ORTHO05D005235 1.8e-16 89.0 60 68.3
HanXRQChr08g0209421 Helianthus annuus HOM05D004475 ORTHO05D005235 1.8e-16 89.0 60 68.3
Aa31LG10G12150 Aethionema arabicum HOM05D004475 ORTHO05D005235 2.4e-16 88.6 58 67.2
HanXRQChr10g0298201 Helianthus annuus HOM05D004475 ORTHO05D005235 3.1e-16 88.2 60 73.3
Aqoxy1G03236 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 4.1e-16 87.8 52 75.0
Lj1g0003764 Lotus japonicus HOM05D004475 ORTHO05D005235 4.1e-16 87.8 51 76.5
PSO541G2072 Papaver somniferum HOM05D004475 ORTHO05D005235 4.1e-16 87.8 59 67.8
SGA_v2.0_scaffold69G23128 Striga asiatica HOM05D004475 ORTHO05D005235 4.1e-16 87.8 55 76.4
A07p23330 Brassica napus HOM05D004475 ORTHO05D005235 5.3e-16 87.4 55 69.1
Lsat_1_v5_gn_5_161180 Lactuca sativa HOM05D004475 ORTHO05D005235 5.3e-16 87.4 60 65.0
arahy.Tifrunner.gnm1.ann1.Y19QZX Arachis hypogaea HOM05D004475 ORTHO05D005235 7.0e-16 87.0 55 69.1
arahy.Tifrunner.gnm1.ann1.AU6CR8 Arachis hypogaea HOM05D004475 ORTHO05D005235 9.1e-16 86.7 55 69.1
Carub.0005s2413 Capsella rubella HOM05D004475 ORTHO05D005235 9.1e-16 86.7 56 67.9
BcaC02g09925 Brassica carinata HOM05D004475 ORTHO05D005235 1.2e-15 86.3 56 67.9
BcaC02g09926 Brassica carinata HOM05D004475 ORTHO05D005235 1.2e-15 86.3 56 67.9
C04p35100 Brassica napus HOM05D004475 ORTHO05D005235 1.2e-15 86.3 56 67.9
BolC4t25066H Brassica oleracea HOM05D004475 ORTHO05D005235 1.2e-15 86.3 56 67.9
Carub.0001s3807 Capsella rubella HOM05D004475 ORTHO05D005235 1.2e-15 86.3 56 67.9
Phvul.001G128700 Phaseolus vulgaris HOM05D004475 ORTHO05D005235 1.2e-15 86.3 51 72.5
arahy.Tifrunner.gnm1.ann1.QEH0EE Arachis hypogaea HOM05D004475 ORTHO05D005235 1.6e-15 85.9 55 67.3
BolC6t37586H Brassica oleracea HOM05D004475 ORTHO05D005235 1.6e-15 85.9 56 67.9
CARHR167480 Cardamine hirsuta HOM05D004475 ORTHO05D005235 1.6e-15 85.9 54 72.2
Glyma.19G135000 Glycine max HOM05D004475 ORTHO05D005235 1.6e-15 85.9 55 69.1
Glyma.03G133200 Glycine max HOM05D004475 ORTHO05D005235 2.6e-15 85.1 55 67.3
unitig_26.g9059 Utricularia gibba HOM05D004475 ORTHO05D005235 2.6e-15 85.1 56 66.1
Ca_22428_v3 Cicer arietinum L. HOM05D004475 ORTHO05D005235 3.5e-15 84.7 51 72.5
ClCG04G003840 Citrullus lanatus HOM05D004475 ORTHO05D005235 3.5e-15 84.7 58 65.5
Psat3g074880 Pisum sativum HOM05D004475 ORTHO05D005235 4.5e-15 84.3 51 72.5
Dinv39670 Davidia involucrata HOM05D004475 ORTHO05D005235 5.9e-15 84.0 61 67.2
Ah.04g151370 Amaranthus hybridus HOM05D004475 ORTHO05D005235 7.7e-15 83.6 61 63.9
MSTRG.6404 Avicennia marina HOM05D004475 ORTHO05D005235 1.0e-14 83.2 60 68.3
CsaV3_4G027790 Cucumis sativus L. HOM05D004475 ORTHO05D005235 1.7e-14 82.4 58 62.1
Lalb_Chr01g0017241 Lupinus albus HOM05D004475 ORTHO05D005235 1.7e-14 82.4 56 64.3
PSO675G0454 Papaver somniferum HOM05D004475 ORTHO05D005235 2.2e-14 82.0 59 64.4
Aqoxy5G02252 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 2.9e-14 81.6 52 69.2
Medtr7g090890 Medicago truncatula HOM05D004475 ORTHO05D005235 6.5e-14 80.5 55 67.3
MELO3C026314.2 Cucumis melo HOM05D004475 ORTHO05D005235 8.5e-14 80.1 58 60.3
SHI12342 Sapria himalayana HOM05D004475 ORTHO05D005235 8.5e-14 80.1 55 61.8
ATR0749G001 Amborella trichopoda HOM05D004475 ORTHO05D005235 1.5e-13 79.3 57 66.7
CDE02G2660 Ceratophyllum demersum HOM05D004475 ORTHO05D005235 1.5e-13 79.3 55 65.5
SalBow1G0186 Salvia bowleyana HOM05D004475 ORTHO05D005235 3.2e-13 78.2 60 58.3
Hund24650 Selenicereus undatus HOM05D004475 ORTHO05D005235 3.2e-13 78.2 61 63.9
TAR369G1128 Trochodendron aralioides HOM05D004475 ORTHO05D005235 3.2e-13 78.2 60 65.0
BolC8t50880H Brassica oleracea HOM05D004475 ORTHO05D005235 4.2e-13 77.8 78 51.3
Atru.chr1.1194 Acer truncatum HOM05D004475 ORTHO05D005235 5.5e-13 77.4 62 62.9
Cc06_g18210 Coffea canephora HOM05D004475 ORTHO05D005235 7.2e-13 77.0 61 62.3
SalBow6G6503 Salvia bowleyana HOM05D004475 ORTHO05D005235 7.2e-13 77.0 60 56.7
TPR.G32720 Trifolium pratense HOM05D004475 ORTHO05D005235 6.1e-12 73.9 53 60.4
Sabra01G0108900 Salix brachista HOM05D004475 ORTHO05D005235 1.0e-11 73.2 44 75.0
Zm00001eb424650 Zea mays HOM05D004475 ORTHO05D005235 6.7e-11 70.5 60 55.0
CDE08G0915 Ceratophyllum demersum HOM05D004475 ORTHO05D005235 3.3e-10 68.2 38 78.9
ECA247G2236 Erigeron canadensis HOM05D004475 ORTHO05D005235 9.7e-10 66.6 60 56.7
Nn7g36424 Nelumbo nucifera HOM05D004475 ORTHO05D005235 9.7e-10 66.6 45 66.7
AUR62024523 Chenopodium quinoa HOM05D004475 ORTHO05D005235 1.3e-09 66.2 61 55.7
AUR62026115 Chenopodium quinoa HOM05D004475 ORTHO05D005235 1.7e-09 65.9 61 55.7
Ciclev10005778m.g Citrus clementina HOM05D004475 ORTHO05D005235 1.7e-09 65.9 41 73.2
MSTRG.10806 Avicennia marina HOM05D004475 ORTHO05D005235 2.2e-09 65.5 61 55.7
BraA04t16044Z Brassica rapa HOM05D004475 ORTHO05D005235 6.3e-09 63.9 53 64.2
PGR004G0119 Punica granatum HOM05D004475 ORTHO05D005235 6.3e-09 63.9 60 53.3
Os06g0301100 Oryza sativa ssp. japonica HOM05D004475 ORTHO05D005235 7.0e-08 60.5 42 61.9
Cpa.g.sc182.27 Carica papaya HOM05D004475 ORTHO05D005235 2.7e-07 58.5 61 50.8
EL10Ac3g07152 Beta vulgaris HOM05D004475 ORTHO05D005235 4.5e-07 57.8 61 49.2
A04p03220 Brassica napus HOM05D004475 ORTHO05D005235 5.9e-07 57.4 47 66.0
Pp3c18_6510 Physcomitrium patens HOM05D004956 ORTHO05D006284 1.3e-06 56.2 53 47.2
Os04g0470300 Oryza sativa ssp. japonica HOM05D004475 ORTHO05D005235 1.7e-06 55.8 45 51.1
HPP92_017986 Vanilla planifolia HOM05D004475 ORTHO05D005235 1.7e-06 55.8 44 56.8
Pp3c21_18160 Physcomitrium patens HOM05D004956 ORTHO05D005235 6.5e-06 53.9 52 46.2
Oeu023134.1 Olea europaea HOM05D004475 ORTHO05D005235 8.5e-06 53.5 36 61.1
SEGI_26247 Sequoiadendron giganteum HOM05D004475 ORTHO05D005235 8.5e-06 53.5 62 43.5
HPP92_026704 Vanilla planifolia HOM05D004475 ORTHO05D005235 8.5e-06 53.5 43 55.8


User provided reference genes

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