Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1107.4 549 100.0
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.7e-284 981.5 572 87.8
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 3.2e-277 958.0 585 82.9
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 1.2e-276 956.1 585 83.2
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 1.6e-273 945.7 587 82.5
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 2.4e-272 941.8 587 81.4
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 1.3e-270 936.0 583 81.5
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 2.4e-269 931.8 584 80.8
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 1.2e-268 929.5 639 76.4
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 3.5e-268 927.9 584 80.8
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 6.6e-267 923.7 549 84.3
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 1.5e-266 922.5 584 80.3
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 1.5e-266 922.5 585 80.0
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 4.3e-266 921.0 584 79.8
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 9.6e-266 919.8 584 80.5
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 1.6e-265 919.1 584 80.1
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 1.1e-264 916.4 584 79.8
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 1.1e-264 916.4 587 80.1
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.4e-264 916.0 585 79.5
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 1.8e-264 915.6 585 79.5
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 1.8e-264 915.6 587 79.9
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.8e-264 915.6 587 79.9
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 3.1e-264 914.8 587 79.7
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 4.0e-264 914.4 585 80.0
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 5.2e-264 914.1 557 82.9
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 5.2e-264 914.1 585 79.1
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 6.9e-264 913.7 584 79.8
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 1.2e-263 912.9 584 79.5
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 4.4e-263 911.0 584 79.5
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 5.8e-263 910.6 582 79.7
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 1.7e-262 909.1 585 79.1
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 2.9e-262 908.3 584 79.1
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 3.8e-262 907.9 585 79.3
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 4.9e-262 907.5 584 79.1
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 1.4e-261 906.0 585 78.8
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 2.7e-260 901.7 584 78.4
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 3.5e-260 901.4 581 79.2
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 6.0e-260 900.6 584 78.8
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 6.0e-260 900.6 584 78.8
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 1.3e-259 899.4 585 78.3
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 1.3e-259 899.4 584 78.4
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 1.3e-259 899.4 585 78.1
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.7e-259 899.0 584 78.6
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 3.0e-259 898.3 610 75.6
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 3.0e-259 898.3 584 78.4
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 5.1e-259 897.5 584 78.4
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 5.1e-259 897.5 585 76.9
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 6.6e-259 897.1 585 77.9
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 6.6e-259 897.1 593 77.7
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 1.1e-258 896.3 584 78.4
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 5.6e-258 894.0 585 77.9
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 2.1e-257 892.1 584 77.6
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 2.8e-257 891.7 593 77.6
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 6.2e-257 890.6 584 78.4
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 6.2e-257 890.6 584 78.1
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 1.1e-256 889.8 584 78.3
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 1.1e-256 889.8 584 78.1
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 1.4e-256 889.4 584 78.1
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 1.8e-256 889.0 585 76.6
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 2.4e-256 888.6 584 77.7
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 4.0e-256 887.9 585 77.3
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 4.5e-255 884.4 586 77.0
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 1.7e-254 882.5 585 77.3
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 3.8e-254 881.3 585 77.6
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 6.4e-254 880.6 584 77.2
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 6.4e-254 880.6 584 77.1
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 1.4e-253 879.4 638 72.4
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 2.4e-253 878.6 585 77.3
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 3.2e-253 878.2 585 76.6
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 4.6e-252 874.4 587 76.7
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 1.3e-251 872.8 585 76.4
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 2.1e-249 865.5 584 76.2
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 3.7e-249 864.8 585 75.2
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 3.1e-248 861.7 584 76.0
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 1.5e-247 859.4 586 75.8
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 2.2e-246 855.5 585 74.9
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 9.3e-245 850.1 587 73.9
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 1.8e-243 845.9 585 73.2
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 1.8e-243 845.9 584 75.3
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 6.7e-243 844.0 584 73.6
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 1.1e-242 843.2 584 73.6
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.1e-242 843.2 585 73.7
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 2.1e-241 839.0 626 71.1
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 2.4e-240 835.5 584 73.1
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 4.0e-240 834.7 585 72.8
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 6.9e-240 833.9 584 73.1
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 4.9e-238 827.8 586 72.5
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 6.5e-238 827.4 588 72.8
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 6.5e-238 827.4 588 72.8
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 2.5e-234 815.5 593 70.5
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 2.5e-234 815.5 585 71.3
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 9.0e-232 807.0 585 70.8
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 2.6e-231 805.4 585 70.9
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 4.5e-231 804.7 588 71.6
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 4.5e-231 804.7 588 71.6
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 6.7e-227 790.8 527 76.9
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 1.1e-226 790.0 618 68.9
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 7.9e-220 767.3 446 85.9
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 7.0e-216 754.2 585 68.4
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 1.7e-209 733.0 558 69.7
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 1.4e-200 703.4 631 63.7
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.6e-178 629.4 603 59.0
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 5.1e-166 588.6 350 83.1
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 3.4e-162 575.9 524 58.8
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 5.1e-158 562.0 602 51.8
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 1.1e-149 534.3 467 62.3
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 3.1e-147 526.2 588 50.3
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 1.2e-143 514.2 365 71.8
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 6.6e-142 508.4 535 51.4
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 4.8e-132 475.7 534 49.4
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.3e-129 467.6 314 76.1
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 6.7e-126 455.3 328 70.7
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 6.2e-124 448.7 733 37.7
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 1.2e-119 434.5 316 71.5
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 3.7e-100 369.8 246 78.5
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 2.6e-93 347.1 270 69.6
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.7e-79 300.4 180 79.4
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 9.8e-77 292.0 266 57.9
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.2e-63 248.4 554 35.6
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 4.9e-60 236.5 457 36.8
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.2e-55 221.9 232 52.2
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 6.2e-55 219.5 213 54.9
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 3.9e-49 200.3 159 71.7
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 3.3e-48 197.2 209 52.2
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 8.9e-46 189.1 526 30.2
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 1.7e-44 184.9 330 42.1
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 4.9e-44 183.3 601 26.5
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 1.7e-41 174.9 158 61.4
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 1.6e-39 168.3 155 63.2
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 4.7e-39 166.8 155 61.9
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.8e-38 164.9 152 61.2
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 4.0e-38 163.7 183 53.0
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.4e-29 133.7 138 56.5
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 7.6e-29 132.9 130 56.2
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 5.4e-27 126.7 130 52.3
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 8.7e-25 119.4 162 45.1
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.2e-18 99.0 227 30.8
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 1.9e-16 91.7 64 70.3
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 1.1e-14 85.9 59 72.9
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 3.1e-14 84.3 56 71.4
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 1.3e-09 68.9 34 79.4
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 7.4e-08 63.2 67 52.2
Rhsim06G0128800 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.3e-07 62.4 42 69.0


User provided reference genes

Program Settings