Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 0.0e+00 1833.5 935 100.0
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 0.0e+00 1636.7 935 91.8
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 5.7e-303 1044.3 623 86.4
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 1.8e-301 1039.3 627 86.9
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 2.5e-298 1028.9 624 85.9
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 7.8e-284 980.7 631 81.5
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 6.2e-281 971.1 630 80.8
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 3.7e-278 961.8 592 84.8
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 2.4e-277 959.1 625 79.4
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.5e-274 949.9 632 77.4
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 1.2e-273 946.8 624 79.3
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 4.4e-271 938.3 623 79.1
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 3.7e-270 935.3 644 77.6
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 2.4e-269 932.6 633 76.8
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 3.0e-267 925.6 614 79.2
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 5.1e-267 924.9 634 77.4
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 1.1e-266 923.7 626 77.8
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 1.9e-266 922.9 635 77.5
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 5.6e-266 921.4 626 77.5
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 7.3e-266 921.0 634 76.3
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 2.8e-265 919.1 645 76.1
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 8.1e-265 917.5 634 76.2
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 1.4e-264 916.8 645 75.8
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 2.6e-263 912.5 639 76.2
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 5.8e-263 911.4 645 75.5
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 2.2e-262 909.4 640 75.9
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 2.2e-262 909.4 645 75.8
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 3.8e-262 908.7 659 74.2
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 8.4e-262 907.5 634 76.2
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 4.2e-261 905.2 654 73.4
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 5.4e-261 904.8 638 74.3
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 5.4e-261 904.8 636 75.3
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 9.3e-261 904.0 644 75.3
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.2e-260 903.7 613 78.5
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 4.6e-260 901.7 622 77.2
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.0e-259 900.6 637 75.5
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.0e-259 900.6 637 75.5
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 1.1e-258 897.1 659 73.6
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 1.5e-258 896.7 632 76.1
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 2.5e-258 896.0 635 74.5
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 7.3e-258 894.4 642 74.0
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 9.6e-258 894.0 646 73.4
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 2.8e-257 892.5 639 74.0
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 3.6e-257 892.1 645 73.5
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 4.8e-257 891.7 639 74.2
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 4.8e-257 891.7 637 74.7
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 8.1e-257 891.0 645 73.3
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 8.1e-257 891.0 646 73.8
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.1e-256 890.6 637 73.9
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 1.4e-256 890.2 636 74.4
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 4.0e-256 888.6 647 73.0
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 9.0e-256 887.5 648 74.2
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 9.0e-256 887.5 647 72.8
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 2.0e-255 886.3 634 74.6
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 2.6e-255 885.9 635 74.0
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 3.4e-255 885.6 635 74.2
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 3.4e-255 885.6 635 73.9
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 7.6e-255 884.4 635 73.9
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 1.3e-254 883.6 649 73.2
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 2.2e-254 882.9 640 73.1
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.9e-254 881.7 641 73.6
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.9e-254 881.7 636 73.7
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 4.9e-254 881.7 633 74.7
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 8.4e-254 880.9 633 74.7
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 1.6e-252 876.7 635 73.9
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 2.1e-252 876.3 646 72.9
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 3.5e-252 875.5 630 74.8
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 1.0e-251 874.0 648 72.4
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 1.7e-251 873.2 639 72.6
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 5.1e-251 871.7 650 72.2
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 8.7e-251 870.9 647 71.4
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 8.7e-251 870.9 649 72.9
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 1.9e-250 869.8 637 71.0
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 1.3e-249 867.1 631 73.7
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 4.8e-249 865.1 632 72.6
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 2.6e-247 859.4 642 72.0
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 5.4e-245 851.7 529 84.5
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 4.6e-244 848.6 648 70.8
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 6.0e-244 848.2 637 71.6
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 3.3e-242 842.4 634 70.0
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 8.1e-241 837.8 651 69.3
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.4e-239 832.4 633 69.4
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 4.5e-239 832.0 642 69.2
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 5.8e-239 831.6 644 69.6
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 7.6e-239 831.2 650 68.9
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 6.5e-238 828.2 648 68.7
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 5.5e-237 825.1 646 68.9
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 1.2e-236 823.9 649 68.6
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 3.5e-236 822.4 576 75.0
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 4.6e-236 822.0 651 68.2
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 7.9e-236 821.2 653 68.0
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 7.9e-236 821.2 650 68.2
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 1.3e-235 820.5 653 68.0
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 1.3e-235 820.5 647 68.6
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 2.3e-235 819.7 643 68.3
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 3.0e-235 819.3 650 67.8
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 3.9e-235 818.9 652 67.9
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 5.1e-235 818.5 655 67.6
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 1.5e-234 817.0 650 68.2
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 7.4e-234 814.7 638 69.7
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 9.6e-234 814.3 639 69.3
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 3.7e-233 812.4 636 68.2
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 4.5e-231 805.4 640 67.7
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.9e-229 800.0 643 67.5
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 9.3e-229 797.7 643 67.3
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 2.3e-227 793.1 653 66.6
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 5.7e-226 788.5 641 66.8
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 4.5e-223 778.9 628 65.6
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.3e-217 760.8 631 67.8
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 2.2e-217 760.0 649 65.8
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 6.3e-217 758.4 626 63.3
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.2e-212 744.2 625 64.2
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.8e-211 740.3 637 65.3
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 2.0e-207 726.9 624 62.0
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 7.7e-199 698.4 633 62.1
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 1.9e-197 693.7 643 59.3
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 3.6e-196 689.5 646 59.0
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 1.2e-172 611.3 613 57.7
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.8e-171 607.4 631 55.6
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.7e-167 593.6 542 61.4
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 2.3e-150 537.3 613 53.7
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 1.2e-148 531.6 636 49.7
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 1.1e-144 518.5 647 47.9
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 3.5e-127 460.3 663 43.1
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 9.0e-115 419.1 344 66.0
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 1.8e-110 404.8 334 68.6
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 4.8e-100 370.2 385 53.2
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 1.0e-89 335.9 233 72.1
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 4.1e-67 260.8 345 48.7
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.5e-56 224.9 130 83.1
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.5e-56 224.9 130 83.1
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 2.9e-44 184.9 565 30.8
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 2.1e-42 178.7 118 82.2
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 2.6e-37 161.8 118 66.9
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 6.4e-20 104.0 115 51.3
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 8.7e-17 93.6 88 58.0
Rhsim02G0109200 Rhododendron simsii HOM05D016402 ORTHO05D016246 8.1e-15 87.0 109 34.9
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 1.7e-12 79.3 98 46.9
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.4e-11 75.5 55 58.2
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 1.9e-08 65.9 44 68.2
SalBow4G0612 Salvia bowleyana HOM05D005586 ORTHO05D360416 2.5e-08 65.5 46 63.0


User provided reference genes

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