Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030455 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 2.7e-51 204.9 96 100.0
vmacro11113 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 2.9e-37 158.3 79 92.4
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 3.9e-37 157.9 78 93.6
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 3.9e-37 157.9 78 93.6
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 8.6e-37 156.8 78 92.3
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 1.1e-36 156.4 78 92.3
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 3.3e-36 154.8 79 88.6
GSVIVG01031967001 Vitis vinifera HOM05D001579 ORTHO05D003470 3.3e-36 154.8 79 87.3
Nn1g01939 Nelumbo nucifera HOM05D001579 ORTHO05D003470 4.3e-36 154.5 79 87.3
Duzib052G0487 Durio zibethinus HOM05D001579 ORTHO05D003470 5.6e-36 154.1 79 87.3
BcaC07g41119 Brassica carinata HOM05D001579 ORTHO05D003470 7.3e-36 153.7 79 87.3
Lj7A248G12 Lonicera japonica HOM05D001579 ORTHO05D003470 7.3e-36 153.7 78 89.7
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 9.5e-36 153.3 78 87.2
BcaB08g35003 Brassica carinata HOM05D001579 ORTHO05D003470 9.5e-36 153.3 78 88.5
TAR376G1017 Trochodendron aralioides HOM05D001579 ORTHO05D003470 9.5e-36 153.3 79 88.6
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 1.2e-35 152.9 79 86.1
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 1.6e-35 152.5 79 88.6
Migut.B00751 Erythranthe guttata HOM05D001579 ORTHO05D003470 1.6e-35 152.5 79 87.3
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 1.6e-35 152.5 79 84.8
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 1.6e-35 152.5 79 84.8
Gorai.012G155500 Gossypium raimondii HOM05D001579 ORTHO05D003470 1.6e-35 152.5 79 84.8
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 2.1e-35 152.1 77 89.6
MSTRG.16808 Avicennia marina HOM05D001579 ORTHO05D003470 2.1e-35 152.1 77 87.0
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 2.1e-35 152.1 77 89.6
AL4G10950 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 2.8e-35 151.8 79 88.6
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 2.8e-35 151.8 77 88.3
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 2.8e-35 151.8 79 86.1
AUR62003165 Chenopodium quinoa HOM05D001579 ORTHO05D003470 2.8e-35 151.8 79 86.1
AUR62034190 Chenopodium quinoa HOM05D001579 ORTHO05D003470 2.8e-35 151.8 79 86.1
AUR62034498 Chenopodium quinoa HOM05D001579 ORTHO05D003470 2.8e-35 151.8 79 86.1
CsaV3_3G002020 Cucumis sativus L. HOM05D001579 ORTHO05D003470 2.8e-35 151.8 78 83.3
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 2.8e-35 151.8 77 89.6
MELO3C013873.2 Cucumis melo HOM05D001579 ORTHO05D003470 3.6e-35 151.4 78 82.1
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 4.7e-35 151.0 77 88.3
Ah.02g117280 Amaranthus hybridus HOM05D001579 ORTHO05D003470 4.7e-35 151.0 79 84.8
A09p57990 Brassica napus HOM05D001579 ORTHO05D003470 4.7e-35 151.0 79 86.1
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 4.7e-35 151.0 76 89.5
Sc13g0008990 Simmondsia chinensis HOM05D001579 ORTHO05D003470 6.1e-35 150.6 77 88.3
Atru.chr5.3017 Acer truncatum HOM05D001579 ORTHO05D003470 8.0e-35 150.2 79 84.8
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 8.0e-35 150.2 79 86.1
Glyma.12G043200 Glycine max HOM05D001579 ORTHO05D003470 8.0e-35 150.2 79 84.8
Lj1g0020223 Lotus japonicus HOM05D001579 ORTHO05D003470 8.0e-35 150.2 79 84.8
Lalb_Chr03g0025681 Lupinus albus HOM05D001579 ORTHO05D003470 8.0e-35 150.2 79 84.8
MD05G1066200 Malus domestica HOM05D001579 ORTHO05D003470 8.0e-35 150.2 77 87.0
Phvul.011G045200 Phaseolus vulgaris HOM05D001579 ORTHO05D003470 8.0e-35 150.2 79 84.8
Sed0021732 Sechium edule HOM05D001579 ORTHO05D003470 8.0e-35 150.2 77 85.7
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 8.0e-35 150.2 77 88.3
VMungo1127G1806 Vigna mungo HOM05D001579 ORTHO05D003470 8.0e-35 150.2 79 84.8
Oeu015994.1 Olea europaea HOM05D001579 ORTHO05D003470 1.0e-34 149.8 77 87.0
Oeu041647.1 Olea europaea HOM05D001579 ORTHO05D003470 1.0e-34 149.8 77 87.0
Sp4g00870 Schrenkiella parvula HOM05D001579 ORTHO05D003470 1.0e-34 149.8 78 88.5
CANSAT80G0427 Cannabis sativa HOM05D001579 ORTHO05D003470 1.4e-34 149.4 77 87.0
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 1.4e-34 149.4 79 83.5
ClCG10G001880 Citrullus lanatus HOM05D001579 ORTHO05D003470 1.4e-34 149.4 78 80.8
Prupe.8G096800 Prunus persica HOM05D001579 ORTHO05D003470 1.4e-34 149.4 77 85.7
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 1.8e-34 149.1 76 86.8
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 1.8e-34 149.1 79 84.8
ECA240G1027 Erigeron canadensis HOM05D001579 ORTHO05D003470 1.8e-34 149.1 76 86.8
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 1.8e-34 149.1 76 86.8
Hma1.2p1_0633F.1_g192550 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 1.8e-34 149.1 77 87.0
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 1.8e-34 149.1 77 87.0
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 1.8e-34 149.1 79 83.5
Lalb_Chr01g0002541 Lupinus albus HOM05D001579 ORTHO05D003470 1.8e-34 149.1 79 83.5
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 1.8e-34 149.1 79 84.8
unitig_0.g66 Utricularia gibba HOM05D001579 ORTHO05D003470 1.8e-34 149.1 79 83.5
CAN.G1298.23 Capsicum annuum HOM05D001579 ORTHO05D003470 2.3e-34 148.7 77 85.7
Lsat_1_v5_gn_2_67440 Lactuca sativa HOM05D001579 ORTHO05D003470 2.3e-34 148.7 78 85.9
MD10G1076200 Malus domestica HOM05D001579 ORTHO05D003470 2.3e-34 148.7 77 87.0
CiPaw.05G064600 Carya illinoinensis HOM05D001579 ORTHO05D003470 3.1e-34 148.3 79 83.5
Glyma.17G231300 Glycine max HOM05D001579 ORTHO05D003470 3.1e-34 148.3 79 83.5
SalBow6G0592 Salvia bowleyana HOM05D001579 ORTHO05D003470 3.1e-34 148.3 79 83.5
SalBow6G1678 Salvia bowleyana HOM05D001579 ORTHO05D003470 3.1e-34 148.3 79 83.5
TWI79G0010 Tripterygium wilfordii HOM05D001579 ORTHO05D003470 3.1e-34 148.3 77 87.0
SEGI_28257 Sequoiadendron giganteum HOM05D001579 ORTHO05D003470 4.0e-34 147.9 79 83.5
ATR0051G048 Amborella trichopoda HOM05D001579 ORTHO05D003470 5.2e-34 147.5 78 83.3
Cc00_g17000 Coffea canephora HOM05D001579 ORTHO05D003470 5.2e-34 147.5 78 82.1
HanXRQChr14g0446281 Helianthus annuus HOM05D001579 ORTHO05D003470 5.2e-34 147.5 76 85.5
MBI01_g34891_MAGBIO Magnolia biondii HOM05D001579 ORTHO05D003470 5.2e-34 147.5 79 82.3
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 5.2e-34 147.5 79 83.5
Nitab4.5_0000974g0080 Nicotiana tabacum HOM05D001579 ORTHO05D003470 5.2e-34 147.5 77 84.4
PGR042G0613 Punica granatum HOM05D001579 ORTHO05D003470 5.2e-34 147.5 77 84.4
CDE06G1318 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 6.8e-34 147.1 79 83.5
Carub.0005s1088 Capsella rubella HOM05D001579 ORTHO05D003470 8.9e-34 146.7 77 85.7
CAN.G1412.7 Capsicum annuum HOM05D001579 ORTHO05D003470 8.9e-34 146.7 77 84.4
Nitab4.5_0011688g0020 Nicotiana tabacum HOM05D001579 ORTHO05D003470 8.9e-34 146.7 77 83.1
Pp3c2_16770 Physcomitrium patens HOM05D001579 ORTHO05D003470 8.9e-34 146.7 79 82.3
RcHm_v2.0_Chr6g0264251 Rosa chinensis HOM05D001579 ORTHO05D003470 8.9e-34 146.7 77 87.0
SMO119G0093 Selaginella moellendorffii HOM05D001579 ORTHO05D003470 8.9e-34 146.7 79 81.0
Solyc02g090860.3 Solanum lycopersicum HOM05D001579 ORTHO05D003470 8.9e-34 146.7 77 84.4
Solyc10g007060.4 Solanum lycopersicum HOM05D001579 ORTHO05D003470 8.9e-34 146.7 77 84.4
Sopen02g035480 Solanum pennellii HOM05D001579 ORTHO05D003470 8.9e-34 146.7 77 84.4
Sopen10g002960 Solanum pennellii HOM05D001579 ORTHO05D003470 8.9e-34 146.7 77 84.4
PGSC0003DMG400004021 Solanum tuberosum HOM05D001579 ORTHO05D003470 8.9e-34 146.7 77 84.4
PGSC0003DMG400025010 Solanum tuberosum HOM05D001579 ORTHO05D003470 8.9e-34 146.7 77 84.4
AagrBONN_evm.TU.Sc2ySwM_344.2010 Anthoceros agrestis HOM05D001579 ORTHO05D003470 1.2e-33 146.4 78 82.1
CARHR265880 Cardamine hirsuta HOM05D001579 ORTHO05D003470 1.2e-33 146.4 88 77.3
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.2e-33 146.4 79 81.0
Hund14641 Selenicereus undatus HOM05D001579 ORTHO05D003470 1.2e-33 146.4 79 84.8
CDE04G1236 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 1.5e-33 146.0 79 82.3
FAN16G2055 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.5e-33 146.0 77 85.7
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 1.5e-33 146.0 79 82.3
TPR.G23438 Trifolium pratense HOM05D001579 ORTHO05D003470 1.5e-33 146.0 78 83.3
FvH4_2g08790 Fragaria vesca HOM05D001579 ORTHO05D003470 2.0e-33 145.6 77 85.7
FvH4_3g28200 Fragaria vesca HOM05D001579 ORTHO05D003470 2.0e-33 145.6 77 85.7
FAN11G3917 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.0e-33 145.6 77 85.7
FAN15G0032 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.0e-33 145.6 77 85.7
FAN16G0460 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.0e-33 145.6 77 85.7
FAN20G1104 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.0e-33 145.6 77 85.7
FAN21G0623 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.0e-33 145.6 77 85.7
FAN27G2756 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.0e-33 145.6 77 85.7
Hma1.2p1_0299F.1_g117910 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 2.0e-33 145.6 77 84.4
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 2.6e-33 145.2 78 83.3
BraA04t17272Z Brassica rapa HOM05D001579 ORTHO05D003470 2.6e-33 145.2 78 83.3
Nitab4.5_0000308g0090 Nicotiana tabacum HOM05D001579 ORTHO05D003470 3.4e-33 144.8 77 81.8
Hund11566 Selenicereus undatus HOM05D001579 ORTHO05D003470 3.4e-33 144.8 79 84.8
BcaC02g08772 Brassica carinata HOM05D001579 ORTHO05D003470 4.4e-33 144.4 78 82.1
C04p50830 Brassica napus HOM05D001579 ORTHO05D003470 4.4e-33 144.4 78 82.1
BolC4t26677H Brassica oleracea HOM05D001579 ORTHO05D003470 4.4e-33 144.4 78 82.1
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 4.4e-33 144.4 79 84.8
QL11p043704 Quercus lobata HOM05D001579 ORTHO05D003470 4.4e-33 144.4 77 83.1
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 5.8e-33 144.1 78 83.3
Thhalv10007412m.g Eutrema salsugineum HOM05D001579 ORTHO05D003470 5.8e-33 144.1 76 85.5
QL11p043604 Quercus lobata HOM05D001579 ORTHO05D003470 7.5e-33 143.7 76 84.2
Cfa005003 Carpinus fangiana HOM05D001579 ORTHO05D003470 9.8e-33 143.3 77 83.1
COL.COLO4_25932 Corchorus olitorius HOM05D001579 ORTHO05D003470 9.8e-33 143.3 77 84.4
Haze_02385 Corylus avellana HOM05D001579 ORTHO05D003470 9.8e-33 143.3 77 83.1
Os10g0400800 Oryza sativa ssp. japonica HOM05D001579 ORTHO05D003470 9.8e-33 143.3 79 81.0
Sabra04G0102800 Salix brachista HOM05D001579 ORTHO05D003470 1.3e-32 142.9 79 83.5
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 1.7e-32 142.5 79 82.3
FAN24G0111 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.7e-32 142.5 70 91.4
Mapoly0012s0145 Marchantia polymorpha HOM05D001579 ORTHO05D003470 1.7e-32 142.5 77 81.8
Potri.004G155000 Populus trichocarpa HOM05D001579 ORTHO05D003470 1.7e-32 142.5 79 83.5
PSO447G0328 Papaver somniferum HOM05D001579 ORTHO05D003470 2.2e-32 142.1 78 80.8
Carub.0004s0076 Capsella rubella HOM05D001579 ORTHO05D003470 2.9e-32 141.7 78 80.8
Zm00001eb255720 Zea mays HOM05D001579 ORTHO05D003470 2.9e-32 141.7 77 81.8
Potri.009G116100 Populus trichocarpa HOM05D001579 ORTHO05D003470 3.7e-32 141.4 79 81.0
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 6.4e-32 140.6 77 80.5
Peaxi162Scf00016g00732 Petunia axillaris HOM05D001579 ORTHO05D003470 6.4e-32 140.6 79 82.3
Aqoxy7G01384 Aquilegia oxysepala HOM05D001579 ORTHO05D003470 8.3e-32 140.2 77 80.5
Cre09.g389430 Chlamydomonas reinhardtii HOM05D001579 ORTHO05D003470 8.3e-32 140.2 77 77.9
BcaC08g45384 Brassica carinata HOM05D001579 ORTHO05D003470 1.1e-31 139.8 81 80.2
C06p30160 Brassica napus HOM05D001579 ORTHO05D003470 1.1e-31 139.8 81 80.2
BolC6t38178H Brassica oleracea HOM05D001579 ORTHO05D003470 1.1e-31 139.8 81 80.2
PRCOL_00000627 Prasinoderma coloniale HOM05D001579 ORTHO05D003470 5.4e-31 137.5 78 74.4
ATR1101G101 Amborella trichopoda HOM05D001579 ORTHO05D003470 7.0e-31 137.1 76 81.6
MCO10G005 Micromonas commoda HOM05D001579 ORTHO05D003470 7.0e-31 137.1 77 74.0
BcaB06g27782 Brassica carinata HOM05D001579 ORTHO05D003470 9.2e-31 136.7 77 80.5
BcaC08g46255 Brassica carinata HOM05D001579 ORTHO05D003470 7.8e-30 133.7 95 68.4
RcHm_v2.0_Chr7g0204471 Rosa chinensis HOM05D001579 ORTHO05D003470 1.0e-29 133.3 76 75.0
BcaB03g12963 Brassica carinata HOM05D001579 ORTHO05D003470 8.6e-29 130.2 78 74.4
CiPaw.01G010000 Carya illinoinensis HOM05D001579 ORTHO05D003470 1.9e-28 129.0 71 83.1
SalBow6G2679 Salvia bowleyana HOM05D001579 ORTHO05D003470 2.1e-27 125.6 118 55.9
BcaB03g15109 Brassica carinata HOM05D001579 ORTHO05D003470 3.6e-27 124.8 66 87.9
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 8.0e-27 123.6 62 90.3
DCAR_006198 Daucus carota HOM05D001579 ORTHO05D003470 2.3e-26 122.1 144 47.9
PSO170G0890 Papaver somniferum HOM05D001579 ORTHO05D003470 3.1e-26 121.7 88 67.0
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 6.8e-26 120.6 61 88.5
CARHR112710 Cardamine hirsuta HOM05D001579 ORTHO05D003470 6.8e-26 120.6 61 90.2
vmacro02105 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 2.4e-23 112.1 77 71.4
Cfa025854 Carpinus fangiana HOM05D001579 ORTHO05D003470 6.0e-22 107.5 74 62.2
BcaC08g46254 Brassica carinata HOM05D001579 ORTHO05D003470 5.1e-21 104.4 57 86.0
Haze_27501 Corylus avellana HOM05D001579 ORTHO05D003470 1.1e-20 103.2 67 67.2
SGA_v2.0_scaffold32G13167 Striga asiatica HOM05D001579 ORTHO05D003470 9.9e-17 90.1 61 70.5
SGA_v2.0_scaffold58G20534 Striga asiatica HOM05D001579 ORTHO05D003470 4.1e-15 84.7 43 86.0
Duzib132G0542 Durio zibethinus HOM05D001579 ORTHO05D003470 9.2e-15 83.6 43 86.0
C08p41200 Brassica napus HOM05D001579 ORTHO05D003470 1.2e-14 83.2 43 86.0
BolC8t51687H Brassica oleracea HOM05D001579 ORTHO05D003470 1.2e-14 83.2 43 86.0
Lj2C359T3 Lonicera japonica HOM05D001579 ORTHO05D003470 1.2e-14 83.2 42 88.1
Lj7C253T7 Lonicera japonica HOM05D001579 ORTHO05D003470 1.2e-14 83.2 42 88.1
CiPaw.01G010500 Carya illinoinensis HOM05D001579 ORTHO05D003470 1.6e-14 82.8 43 86.0
CiPaw.01G010800 Carya illinoinensis HOM05D001579 ORTHO05D003470 1.6e-14 82.8 43 86.0
CBR_g23301 Chara braunii HOM05D001579 ORTHO05D003470 2.1e-14 82.4 43 86.0
CARHR112730 Cardamine hirsuta HOM05D001579 ORTHO05D003470 6.0e-14 80.9 43 83.7
BraA09t41189Z Brassica rapa HOM05D001579 ORTHO05D003470 7.8e-14 80.5 43 83.7
SalBow6G3810 Salvia bowleyana HOM05D001579 ORTHO05D003470 5.2e-10 67.8 103 39.8
arahy.Tifrunner.gnm1.ann1.L5L68D Arachis hypogaea HOM05D001579 ORTHO05D005341 1.3e-08 63.2 46 65.2
CAN.G294.17 Capsicum annuum HOM05D001579 ORTHO05D003470 4.6e-06 54.7 30 73.3


User provided reference genes

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