Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.4e-134 483.0 259 100.0
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 3.2e-110 402.1 249 86.3
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.9e-107 392.9 254 82.7
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 2.6e-104 382.5 254 83.1
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 1.3e-103 380.2 253 81.0
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 3.7e-103 378.6 253 79.1
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 4.9e-103 378.3 260 80.0
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 1.6e-101 373.2 249 79.5
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 6.0e-101 371.3 249 78.3
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 3.9e-100 368.6 249 79.1
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.5e-99 366.7 249 77.5
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 2.5e-99 365.9 248 78.6
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 5.6e-99 364.8 253 77.9
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 7.3e-99 364.4 253 76.3
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 9.5e-99 364.0 252 77.4
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.6e-98 363.2 249 77.5
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 4.7e-98 361.7 253 78.3
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 8.1e-98 360.9 253 76.7
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.1e-97 360.5 247 77.3
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.4e-97 359.4 247 76.9
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 3.1e-97 359.0 249 77.5
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 6.8e-97 357.8 250 77.2
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.5e-96 356.7 250 76.8
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.5e-96 356.7 241 80.5
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.5e-96 356.7 249 76.3
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 2.0e-96 356.3 248 77.4
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 3.4e-96 355.5 248 77.4
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 1.9e-94 349.7 254 72.4
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.9e-94 349.7 249 75.5
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 2.4e-94 349.4 254 76.4
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.4e-94 349.4 247 77.3
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 5.4e-94 348.2 249 75.1
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 1.3e-92 343.6 249 75.9
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 2.3e-92 342.8 241 74.3
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 5.1e-92 341.7 242 77.7
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 6.6e-92 341.3 247 75.7
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 1.9e-91 339.7 243 75.7
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.9e-91 339.7 248 75.8
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 5.6e-91 338.2 250 74.8
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 7.3e-91 337.8 249 73.5
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 7.3e-91 337.8 249 75.1
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 9.6e-91 337.4 238 76.9
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.6e-90 336.7 250 75.6
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 2.1e-90 336.3 249 74.7
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 2.8e-90 335.9 247 75.7
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 2.4e-89 332.8 248 74.2
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 2.4e-89 332.8 252 71.8
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 6.9e-89 331.3 253 72.7
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 6.9e-89 331.3 249 73.9
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 6.9e-89 331.3 251 72.5
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 9.0e-89 330.9 247 75.3
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 9.0e-89 330.9 247 75.7
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.5e-88 330.1 250 72.0
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.5e-88 330.1 245 75.5
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 2.6e-88 329.3 250 73.2
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 3.4e-88 328.9 249 73.9
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 5.8e-88 328.2 255 72.9
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.3e-87 327.0 249 75.1
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.3e-87 327.0 278 70.1
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 1.7e-87 326.6 344 57.0
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 3.8e-87 325.5 253 69.6
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 3.8e-87 325.5 250 73.6
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 8.4e-87 324.3 249 73.1
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.4e-86 323.6 273 69.2
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 1.4e-86 323.6 249 73.1
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 5.4e-86 321.6 250 70.0
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.2e-85 320.5 247 72.9
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 2.1e-85 319.7 251 72.1
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 2.1e-85 319.7 250 72.4
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 7.8e-85 317.8 249 68.7
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 7.8e-85 317.8 251 70.5
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 1.0e-84 317.4 255 71.4
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 2.3e-84 316.2 253 68.8
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 3.0e-84 315.8 240 72.9
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 8.7e-84 314.3 244 70.5
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 8.7e-84 314.3 251 69.7
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 8.7e-84 314.3 253 71.9
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 1.5e-83 313.5 199 77.4
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.9e-83 313.2 243 70.8
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 7.3e-83 311.2 247 69.6
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 2.1e-82 309.7 193 81.9
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 4.8e-82 308.5 199 77.9
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 8.1e-82 307.8 247 68.8
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.1e-81 307.4 245 73.5
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 3.1e-81 305.8 245 67.8
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 9.0e-81 304.3 241 70.1
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 1.2e-80 303.9 241 69.7
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.2e-80 303.9 243 69.5
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 2.0e-80 303.1 241 69.7
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 4.5e-80 302.0 245 69.0
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 4.5e-80 302.0 246 69.1
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 7.6e-80 301.2 248 67.3
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.7e-79 300.1 243 68.3
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.7e-79 300.1 241 68.5
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 3.8e-79 298.9 248 68.5
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 7.1e-78 294.7 248 66.9
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 2.7e-77 292.7 244 64.8
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 3.5e-77 292.4 242 65.7
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 4.6e-77 292.0 261 64.8
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 5.1e-76 288.5 247 66.4
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 6.7e-76 288.1 249 67.1
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.5e-75 287.0 227 67.0
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 3.3e-75 285.8 247 66.0
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 3.7e-74 282.3 146 96.6
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 6.2e-74 281.6 247 63.6
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 1.4e-73 280.4 259 62.5
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 4.0e-73 278.9 249 65.1
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.3e-73 278.5 331 52.6
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.2e-72 277.3 249 64.7
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 2.0e-72 276.6 246 64.6
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 2.6e-72 276.2 247 66.0
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 4.5e-72 275.4 293 57.3
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 3.0e-68 262.7 240 64.6
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.1e-65 254.2 243 59.3
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 1.1e-65 254.2 284 54.6
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 2.4e-65 253.1 179 72.1
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 7.6e-64 248.1 248 57.7
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 1.7e-63 246.9 224 62.1
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 3.8e-63 245.7 251 57.0
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.4e-62 243.8 253 56.9
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 3.7e-58 229.2 247 57.5
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 8.2e-58 228.0 226 54.9
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 3.8e-55 219.2 245 54.7
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 1.0e-52 211.1 136 79.4
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 5.7e-51 205.3 132 76.5
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 9.7e-51 204.5 167 70.7
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.9e-46 190.3 140 70.0
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 7.2e-46 188.3 149 73.8
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 1.1e-43 181.0 142 67.6
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 1.5e-40 170.6 254 42.9
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 2.8e-34 149.8 191 48.7
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 2.4e-33 146.7 194 55.7
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 7.0e-33 145.2 337 38.6
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 1.2e-32 144.4 227 38.3
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 2.5e-30 136.7 225 37.3
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 2.5e-30 136.7 119 70.6
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 9.4e-30 134.8 82 98.8
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.0e-28 131.3 246 35.4
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 8.3e-26 121.7 109 62.4
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 1.4e-25 120.9 72 83.3
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 2.0e-24 117.1 92 64.1
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 6.1e-21 105.5 58 82.8
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 6.8e-20 102.1 79 63.3
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 7.5e-19 98.6 79 62.0
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.4e-09 67.8 63 57.1
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 5.9e-08 62.4 158 31.6
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.7e-07 60.8 212 29.7
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 2.9e-07 60.1 53 58.5
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.9e-07 59.7 34 73.5
TAR497G0002 Trochodendron aralioides HOM05D005017 ORTHO05D006044 8.6e-07 58.5 31 83.9


User provided reference genes

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