Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030443 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.2e-20 102.4 61 100.0
CSS0022867 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 6.1e-12 73.6 59 67.8
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.4e-11 72.4 59 66.1
CSS0011241 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 3.9e-11 70.9 59 66.1
Hma1.2p1_0293F.1_g116270 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 1.3e-09 65.9 64 62.5
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 1.3e-09 65.9 61 65.6
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.7e-09 65.5 62 61.3
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 2.8e-09 64.7 62 62.9
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 8.2e-09 63.2 60 66.7
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 1.4e-08 62.4 61 67.2
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 3.1e-08 61.2 62 58.1
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 3.1e-08 61.2 62 58.1
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 3.1e-08 61.2 62 58.1
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 4.1e-08 60.8 62 59.7
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 4.1e-08 60.8 62 58.1
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 5.3e-08 60.5 62 58.1
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 5.3e-08 60.5 62 58.1
CSS0022323 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 5.3e-08 60.5 60 61.7
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 5.3e-08 60.5 61 62.3
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 6.9e-08 60.1 61 62.3
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 9.1e-08 59.7 62 56.5
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 9.1e-08 59.7 62 56.5
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 9.1e-08 59.7 62 56.5
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 9.1e-08 59.7 62 56.5
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 9.1e-08 59.7 62 56.5
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 9.1e-08 59.7 62 58.1
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 1.2e-07 59.3 62 58.1
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 1.2e-07 59.3 62 56.5
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 1.5e-07 58.9 67 59.7
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 1.5e-07 58.9 62 56.5
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 1.5e-07 58.9 62 56.5
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 1.5e-07 58.9 62 56.5
Dinv18091 Davidia involucrata HOM05D005524 ORTHO05D005392 1.5e-07 58.9 64 56.2
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 2.0e-07 58.5 62 56.5
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 2.0e-07 58.5 62 56.5
CSS0022662 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 2.0e-07 58.5 59 57.6
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 2.0e-07 58.5 63 61.9
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 2.0e-07 58.5 62 59.7
Potri.001G268800 Populus trichocarpa HOM05D005524 ORTHO05D005392 2.0e-07 58.5 61 60.7
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 2.6e-07 58.2 62 59.7
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 4.5e-07 57.4 67 58.2
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 5.9e-07 57.0 63 58.7
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 5.9e-07 57.0 63 58.7
Sabra16G0164700 Salix brachista HOM05D005524 ORTHO05D005392 7.7e-07 56.6 61 59.0
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 1.0e-06 56.2 64 59.4
Zm00001eb252840 Zea mays HOM05D054024 ORTHO05D005392 1.0e-06 56.2 59 54.2
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 56.5
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 1.7e-06 55.5 62 56.5
Phvul.001G137100 Phaseolus vulgaris HOM05D005524 ORTHO05D005392 1.7e-06 55.5 57 59.6
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 2.2e-06 55.1 62 54.8
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 2.2e-06 55.1 65 55.4
Thecc.05G164300 Theobroma cacao HOM05D005524 ORTHO05D005392 2.2e-06 55.1 64 59.4
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 2.9e-06 54.7 62 53.2
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 3.8e-06 54.3 62 54.8
CSS0036543 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 3.8e-06 54.3 60 53.3
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 3.8e-06 54.3 62 53.2
Gorai.007G358400 Gossypium raimondii HOM05D008862 ORTHO05D005392 3.8e-06 54.3 64 53.1
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 5.0e-06 53.9 61 54.1
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 5.0e-06 53.9 62 54.8
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 5.0e-06 53.9 62 54.8
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 5.0e-06 53.9 62 54.8
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 5.0e-06 53.9 62 54.8
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 5.0e-06 53.9 62 54.8
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 5.0e-06 53.9 62 54.8
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 6.5e-06 53.5 63 57.1
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 6.5e-06 53.5 62 53.2
ClCG09G004270 Citrullus lanatus HOM05D005524 ORTHO05D005392 6.5e-06 53.5 64 56.2
Cc02_g27760 Coffea canephora HOM05D005524 ORTHO05D005392 6.5e-06 53.5 62 56.5
Hma1.2p1_0621F.1_g190610 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 6.5e-06 53.5 60 55.0


User provided reference genes

Program Settings