Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030437 Camellia sinensis var. sinensis HOM05D008821 ORTHO05D010464 1.2e-64 249.6 119 100.0
CiPaw.09G121300 Carya illinoinensis HOM05D008821 ORTHO05D010464 1.7e-18 96.3 131 40.5
Manes.15G123932 Manihot esculenta HOM05D008821 ORTHO05D010464 4.2e-17 91.7 113 46.9
TAR460G0006 Trochodendron aralioides HOM05D008821 ORTHO05D010464 4.2e-17 91.7 127 43.3
Oeu007936.1 Olea europaea HOM05D008821 ORTHO05D010464 7.2e-17 90.9 137 44.5
Nn4g26609 Nelumbo nucifera HOM05D008821 ORTHO05D010464 3.6e-16 88.6 67 58.2
Dinv32224 Davidia involucrata HOM05D000116 ORTHO05D000133 5.7e-14 81.3 106 44.3
Lj4g0018254 Lotus japonicus HOM05D008821 ORTHO05D010464 2.2e-13 79.3 119 37.0
Medtr5g077560 Medicago truncatula HOM05D008821 ORTHO05D010464 2.8e-13 79.0 117 41.0
Gohir.A06G139000 Gossypium hirsutum HOM05D008821 ORTHO05D010464 4.8e-13 78.2 128 37.5
Lj5g0007792 Lotus japonicus HOM05D008821 ORTHO05D010464 8.2e-13 77.4 119 37.8
Gohir.D06G143700 Gossypium hirsutum HOM05D008821 ORTHO05D010464 1.1e-12 77.0 127 36.2
Gorai.010G167500 Gossypium raimondii HOM05D008821 ORTHO05D010464 1.1e-12 77.0 127 36.2
Oeu007934.1 Olea europaea HOM05D008821 ORTHO05D010464 3.1e-12 75.5 71 53.5
Thecc.06G147000 Theobroma cacao HOM05D008821 ORTHO05D010464 3.1e-12 75.5 125 38.4
Phvul.002G180600 Phaseolus vulgaris HOM05D008821 ORTHO05D010464 4.1e-12 75.1 118 42.4
Prupe.4G083800 Prunus persica HOM05D008821 ORTHO05D010464 4.1e-12 75.1 136 35.3
TPR.G9571 Trifolium pratense HOM05D008821 ORTHO05D010464 5.3e-12 74.7 122 38.5
Glyma.08G098600 Glycine max HOM05D008821 ORTHO05D010464 9.1e-12 73.9 123 35.8
Glyma.05G142600 Glycine max HOM05D008821 ORTHO05D010464 1.2e-11 73.6 116 37.1
Lalb_Chr12g0196061 Lupinus albus HOM05D008821 ORTHO05D010464 1.5e-11 73.2 126 36.5
Atru.chr10.1160 Acer truncatum HOM05D008821 ORTHO05D010464 2.9e-10 68.9 142 34.5
Psat7g081560 Pisum sativum HOM05D008821 ORTHO05D010464 2.9e-10 68.9 125 34.4
MBI18_g11239_MAGBIO Magnolia biondii HOM05D008821 ORTHO05D010464 3.8e-10 68.6 119 36.1
ClCG01G024780 Citrullus lanatus HOM05D008821 ORTHO05D010464 8.5e-10 67.4 127 35.4
MELO3C007119.2 Cucumis melo HOM05D008821 ORTHO05D010464 8.5e-10 67.4 127 35.4
FAN21G0539 Fragaria x ananassa HOM05D008821 ORTHO05D010464 1.4e-09 66.6 127 34.6
Sc24g0001660 Simmondsia chinensis HOM05D008821 ORTHO05D010464 1.4e-09 66.6 112 33.0
FvH4_3g05210 Fragaria vesca HOM05D008821 ORTHO05D010464 1.9e-09 66.2 127 34.6
Aqoxy1G01677 Aquilegia oxysepala HOM05D008821 ORTHO05D010464 3.2e-09 65.5 130 35.4
RcHm_v2.0_Chr5g0014511 Rosa chinensis HOM05D008821 ORTHO05D010464 4.2e-09 65.1 128 34.4
Cfa000919 Carpinus fangiana HOM05D008821 ORTHO05D010464 7.2e-09 64.3 65 46.2
CsaV3_6G051900 Cucumis sativus L. HOM05D000116 ORTHO05D010464 9.4e-09 63.9 103 38.8
PSO541G6549 Papaver somniferum HOM05D008821 ORTHO05D010464 9.4e-09 63.9 104 36.5
Haze_05636 Corylus avellana HOM05D008821 ORTHO05D010464 2.1e-08 62.8 64 46.9
FAN16G1747 Fragaria x ananassa HOM05D008821 ORTHO05D010464 2.7e-08 62.4 127 33.9
FAN16G2928 Fragaria x ananassa HOM05D008821 ORTHO05D010464 2.7e-08 62.4 127 33.9
arahy.Tifrunner.gnm1.ann1.SDZ0GZ Arachis hypogaea HOM05D008821 ORTHO05D010464 5.1e-07 58.2 130 32.3
SGA_v2.0_scaffold40G15657 Striga asiatica HOM05D000624 ORTHO05D000495 5.1e-07 58.2 132 35.6
arahy.Tifrunner.gnm1.ann1.ZX7BQ2 Arachis hypogaea HOM05D000116 ORTHO05D010464 8.8e-07 57.4 132 32.6


User provided reference genes

Program Settings