Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.8e-87 325.9 162 100.0
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 9.3e-68 260.4 147 89.1
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.3e-65 251.9 162 79.0
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 2.6e-62 242.3 162 76.5
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 8.4e-61 237.3 162 75.3
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 8.4e-61 237.3 162 75.3
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.7e-59 232.3 162 72.2
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.7e-59 232.3 162 72.2
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 2.7e-59 232.3 162 74.1
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 1.3e-58 229.9 162 74.7
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.3e-56 223.4 165 70.9
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.4e-55 219.9 169 66.9
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 9.0e-55 217.2 164 71.3
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.5e-54 216.5 166 66.9
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 4.5e-54 214.9 167 68.9
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 7.2e-52 207.6 164 67.1
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.1e-51 206.1 166 68.7
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 7.9e-51 204.1 169 65.7
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 6.7e-50 201.1 162 66.7
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 6.7e-50 201.1 162 66.7
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 8.7e-50 200.7 180 60.0
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 1.1e-49 200.3 168 63.7
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 2.5e-49 199.1 164 64.0
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 4.3e-49 198.4 161 65.2
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 4.3e-49 198.4 168 64.3
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 7.4e-49 197.6 155 67.1
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 2.8e-48 195.7 165 63.6
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 2.8e-48 195.7 166 62.7
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 3.7e-48 195.3 178 59.6
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 8.2e-48 194.1 163 63.8
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 8.2e-48 194.1 163 63.8
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 1.4e-47 193.4 166 62.7
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.8e-47 193.0 163 63.2
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.1e-47 192.2 161 64.0
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.2e-46 190.3 154 67.5
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 1.2e-46 190.3 158 63.3
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 1.2e-46 190.3 163 60.7
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.0e-46 189.5 157 65.6
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.6e-46 189.1 165 60.0
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.6e-46 189.1 161 63.4
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.6e-46 189.1 163 62.0
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 2.6e-46 189.1 167 62.9
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 7.7e-46 187.6 174 60.3
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 1.7e-45 186.4 146 65.8
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.7e-45 186.4 161 62.7
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 3.8e-45 185.3 163 59.5
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.9e-44 183.0 142 66.2
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 5.5e-44 181.4 165 60.6
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 5.5e-44 181.4 163 60.7
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 7.2e-44 181.0 165 60.0
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 7.2e-44 181.0 155 61.3
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.6e-43 179.9 163 58.9
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 2.1e-43 179.5 162 60.5
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 2.7e-43 179.1 156 60.3
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 2.7e-43 179.1 157 61.8
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 3.6e-43 178.7 161 63.4
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.6e-43 178.7 161 59.6
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 4.6e-43 178.3 160 58.8
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 4.6e-43 178.3 163 59.5
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 4.6e-43 178.3 163 59.5
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.6e-43 178.3 162 61.7
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 6.1e-43 177.9 160 61.9
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 6.1e-43 177.9 163 58.9
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 7.9e-43 177.6 165 58.8
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 7.9e-43 177.6 155 61.3
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 1.4e-42 176.8 161 59.0
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 3.0e-42 175.6 167 58.1
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 3.9e-42 175.3 166 57.8
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 3.9e-42 175.3 166 57.8
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 3.9e-42 175.3 161 58.4
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 5.1e-42 174.9 159 59.7
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 6.7e-42 174.5 165 58.2
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.7e-42 174.5 166 55.4
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 8.8e-42 174.1 162 60.5
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.1e-41 173.7 165 57.6
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.1e-41 173.7 163 60.7
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.5e-41 173.3 149 62.4
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 2.0e-41 172.9 162 59.9
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 2.5e-41 172.6 154 61.7
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.5e-41 172.6 156 59.6
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 4.3e-41 171.8 163 59.5
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 4.3e-41 171.8 112 75.0
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 5.7e-41 171.4 162 59.3
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 5.7e-41 171.4 154 57.8
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 7.4e-41 171.0 160 58.8
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.3e-40 170.2 146 62.3
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.3e-40 170.2 146 62.3
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.3e-40 170.2 160 58.1
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.7e-40 169.9 167 55.7
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.2e-40 169.5 125 69.6
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.8e-40 169.1 162 60.5
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.8e-40 169.1 154 59.7
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 3.7e-40 168.7 110 78.2
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 6.3e-40 167.9 169 56.2
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 8.2e-40 167.5 162 60.5
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 8.2e-40 167.5 160 57.5
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.1e-39 167.2 166 55.4
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 1.1e-39 167.2 122 70.5
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 1.4e-39 166.8 161 55.3
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 1.4e-39 166.8 162 59.9
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.4e-39 166.8 162 59.9
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.4e-39 166.8 162 59.9
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.4e-39 166.8 153 58.8
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 1.8e-39 166.4 164 57.3
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 1.8e-39 166.4 151 60.9
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.4e-39 166.0 160 56.9
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 2.4e-39 166.0 166 56.0
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 2.4e-39 166.0 146 59.6
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 3.1e-39 165.6 162 57.4
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 3.1e-39 165.6 161 58.4
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 4.1e-39 165.2 180 53.9
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 5.3e-39 164.9 128 64.8
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 6.9e-39 164.5 162 59.3
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.2e-38 163.7 146 62.3
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.2e-38 163.7 146 59.6
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.0e-38 162.9 160 56.2
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 7.7e-38 161.0 154 61.7
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 7.7e-38 161.0 161 54.0
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 5.0e-37 158.3 162 53.7
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 1.4e-36 156.8 163 53.4
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.9e-36 156.4 162 54.3
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 2.5e-36 156.0 172 53.5
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 3.2e-36 155.6 160 55.0
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 3.2e-36 155.6 214 42.5
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 4.2e-36 155.2 160 54.4
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 2.1e-35 152.9 149 57.7
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 8.8e-34 147.5 160 50.6
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.5e-33 146.7 153 55.6
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 2.0e-33 146.4 162 53.1
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 3.3e-33 145.6 109 67.9
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 5.7e-33 144.8 147 57.1
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 2.2e-32 142.9 179 49.7
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.6e-30 136.7 171 45.6
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.0e-30 136.3 162 46.9
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.3e-29 133.7 135 54.1
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.3e-29 133.7 162 50.0
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.7e-29 133.3 120 62.5
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 2.2e-29 132.9 129 55.0
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.9e-28 129.8 126 55.6
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 1.9e-28 129.8 170 47.6
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 9.4e-28 127.5 118 57.6
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 9.4e-28 127.5 163 44.8
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 8.8e-26 120.9 130 50.8
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 4.4e-25 118.6 76 76.3
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 5.7e-25 118.2 139 49.6
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.7e-24 116.7 128 52.3
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 2.2e-24 116.3 146 45.9
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.4e-23 112.8 128 52.3
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 4.1e-23 112.1 138 47.8
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 5.3e-23 111.7 106 57.5
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 1.7e-16 90.1 147 42.9
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 1.6e-14 83.6 129 38.8
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 5.9e-14 81.6 79 59.5
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.7e-08 63.5 45 73.3


User provided reference genes

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