Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 7.6e-136 487.3 262 100.0
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.4e-134 481.1 262 98.9
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.4e-126 456.4 262 92.4
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 5.4e-126 454.5 262 91.6
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 5.4e-126 454.5 262 90.5
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 9.3e-126 453.8 262 90.5
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 3.5e-125 451.8 262 90.1
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.7e-124 449.5 262 90.5
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.3e-124 449.1 262 89.7
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.3e-124 449.1 262 89.7
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 2.3e-124 449.1 262 89.7
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.9e-124 448.4 262 90.5
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.1e-123 446.8 262 90.1
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.9e-123 446.0 262 88.9
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 1.9e-123 446.0 262 89.7
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 2.5e-123 445.7 262 89.7
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.5e-123 445.7 262 89.7
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 3.3e-123 445.3 262 89.7
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 5.6e-123 444.5 262 88.5
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 5.6e-123 444.5 262 88.5
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 9.6e-123 443.7 262 88.5
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.6e-122 443.0 262 88.2
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.6e-122 443.0 261 90.0
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 1.6e-122 443.0 262 89.7
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.8e-122 442.2 262 88.2
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 88.5
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.4e-121 439.9 262 89.7
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 87.8
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 88.5
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 3.1e-121 438.7 262 88.2
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 4.0e-121 438.3 262 88.2
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 5.3e-121 438.0 262 88.2
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 87.0
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 87.8
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 87.8
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 1.2e-120 436.8 262 88.9
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.2e-120 436.8 262 88.5
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 2.6e-120 435.6 262 87.4
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 4.5e-120 434.9 262 87.0
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 7.6e-120 434.1 262 86.6
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 86.6
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 86.6
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 85.9
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 86.3
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 85.9
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 86.6
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 85.9
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.1e-118 430.3 262 86.3
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 1.1e-118 430.3 262 88.2
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 87.0
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 85.5
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 85.1
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 85.1
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 85.9
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 2.4e-118 429.1 259 89.2
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 85.5
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 87.4
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 3.2e-118 428.7 262 85.1
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 85.9
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 84.4
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 86.6
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.2e-117 426.8 263 85.9
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 85.1
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 86.3
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 3.5e-117 425.2 263 85.6
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 85.9
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 84.4
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 2.3e-116 422.5 263 85.2
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 84.0
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 84.0
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 83.2
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 85.1
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 85.1
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 84.7
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 84.4
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 83.6
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 83.6
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 84.4
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 84.4
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 83.6
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 7.4e-115 417.5 264 84.8
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 82.8
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 4.8e-114 414.8 263 82.9
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 83.6
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 1.1e-113 413.7 262 80.9
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.1e-113 413.7 251 84.5
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.8e-113 412.9 264 84.1
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 5.3e-113 411.4 239 90.8
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 9.0e-113 410.6 262 82.1
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 1.3e-111 406.8 262 82.1
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.7e-111 406.4 263 80.6
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.8e-111 405.2 264 80.3
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 1.1e-110 403.7 262 81.3
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.9e-110 402.9 262 81.7
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 1.9e-110 402.9 263 83.3
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 4.2e-110 401.7 262 80.2
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 5.5e-110 401.4 263 81.7
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 7.1e-110 401.0 247 86.6
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 7.1e-110 401.0 247 86.6
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 1.2e-109 400.2 263 82.5
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 4.6e-109 398.3 262 81.7
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 7.9e-109 397.5 262 79.0
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 2.3e-108 396.0 262 79.0
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 3.0e-108 395.6 262 78.6
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 3.0e-108 395.6 262 78.6
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 3.0e-108 395.6 262 78.6
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 3.0e-108 395.6 262 78.6
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 3.9e-108 395.2 262 78.6
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 3.9e-108 395.2 246 85.4
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 78.6
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 78.6
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 78.6
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 79.0
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 8.7e-108 394.0 262 78.6
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 8.7e-108 394.0 262 78.2
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 8.7e-108 394.0 262 78.2
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 8.7e-108 394.0 262 79.0
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 2.5e-107 392.5 262 78.2
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 78.2
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 77.9
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 2.1e-106 389.4 263 77.9
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 2.1e-106 389.4 263 77.9
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 2.1e-106 389.4 263 77.9
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 6.2e-106 387.9 270 76.7
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 9.0e-105 384.0 263 80.2
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 9.0e-105 384.0 263 80.2
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.2e-104 383.6 263 79.5
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.5e-104 383.3 262 79.8
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 3.4e-104 382.1 263 79.5
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 2.9e-103 379.0 264 79.9
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 6.5e-103 377.9 270 74.1
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 4.2e-102 375.2 248 81.0
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 3.5e-101 372.1 262 78.6
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 7.9e-101 370.9 218 90.4
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 7.7e-96 354.4 249 73.9
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 2.2e-95 352.8 241 80.1
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 8.5e-95 350.9 262 74.0
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 2.5e-94 349.4 210 87.1
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.6e-93 346.7 238 75.6
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.1e-93 346.3 214 86.4
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.0e-92 344.0 226 77.9
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.8e-92 343.2 233 76.4
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.3e-90 337.0 223 76.2
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.8e-90 335.1 263 67.3
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 3.4e-88 328.9 267 68.2
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 3.3e-83 312.4 267 62.9
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.8e-82 308.5 250 71.2
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.1e-81 305.8 247 69.2
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 2.9e-79 299.3 218 71.6
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 9.4e-78 294.3 232 65.1
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 1.8e-76 290.0 250 66.0
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 4.4e-75 285.4 204 76.0
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 4.1e-73 278.9 262 64.9
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 1.7e-71 273.5 263 59.7
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 2.9e-71 272.7 208 67.8
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 5.2e-68 261.9 270 55.9
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 6.3e-66 255.0 211 63.5
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.5e-62 243.0 235 63.4
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.3e-55 220.7 130 84.6
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 1.2e-53 214.2 244 48.8
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.3e-52 209.9 120 90.0
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 2.8e-50 203.0 138 77.5
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 2.8e-50 203.0 245 49.0
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 9.5e-46 188.0 179 60.9
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.1e-45 186.8 118 83.1
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.7e-39 167.2 191 53.4
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.8e-36 157.1 141 64.5
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 6.2e-29 132.1 96 68.8
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 2.4e-25 120.2 69 91.3


User provided reference genes

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