Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.9e-48 194.9 98 100.0
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.3e-36 154.5 93 80.6
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 7.7e-33 143.7 84 86.9
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 5.0e-32 141.0 79 88.6
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 4.2e-31 137.9 87 77.0
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 2.7e-30 135.2 81 84.0
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 6.1e-30 134.0 83 81.9
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 7.9e-30 133.7 94 70.2
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 7.9e-30 133.7 80 80.0
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 1.4e-29 132.9 88 73.9
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.8e-29 132.5 98 74.5
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 1.8e-29 132.5 86 77.9
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 2.3e-29 132.1 77 83.1
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 3.0e-29 131.7 85 77.6
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 3.9e-29 131.3 80 83.8
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 3.9e-29 131.3 83 80.7
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 5.1e-29 131.0 84 78.6
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 8.8e-29 130.2 84 77.4
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-28 129.8 89 76.4
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.1e-28 129.8 88 72.7
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.5e-28 129.4 80 82.5
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.5e-28 129.4 89 75.3
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 2.6e-28 128.6 81 81.5
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.6e-28 128.6 85 76.5
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 3.3e-28 128.3 93 68.8
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 3.3e-28 128.3 88 71.6
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 4.4e-28 127.9 84 77.4
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 4.4e-28 127.9 88 69.3
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.2e-27 125.6 77 84.4
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.2e-27 125.6 88 69.3
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 3.7e-27 124.8 88 70.5
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 4.8e-27 124.4 84 77.4
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 4.8e-27 124.4 93 68.8
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 4.8e-27 124.4 87 74.7
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 6.3e-27 124.0 88 71.6
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 6.3e-27 124.0 84 76.2
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 8.2e-27 123.6 93 68.8
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 8.2e-27 123.6 84 72.6
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 8.2e-27 123.6 88 70.5
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 1.1e-26 123.2 89 74.2
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 1.8e-26 122.5 82 73.2
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.4e-26 122.1 89 74.2
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 2.4e-26 122.1 88 69.3
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 2.4e-26 122.1 89 71.9
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 3.1e-26 121.7 91 69.2
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 3.1e-26 121.7 84 75.0
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 4.1e-26 121.3 92 72.8
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 4.1e-26 121.3 93 67.7
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 4.1e-26 121.3 89 69.7
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 4.1e-26 121.3 89 69.7
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 4.1e-26 121.3 89 69.7
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 4.1e-26 121.3 83 73.5
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 4.1e-26 121.3 83 73.5
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 4.1e-26 121.3 80 75.0
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 7.0e-26 120.6 90 70.0
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 9.1e-26 120.2 82 74.4
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 9.1e-26 120.2 89 69.7
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 1.2e-25 119.8 89 69.7
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.2e-25 119.8 84 75.0
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 1.5e-25 119.4 89 73.0
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 1.5e-25 119.4 83 72.3
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 2.0e-25 119.0 90 65.6
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 2.0e-25 119.0 93 68.8
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.0e-25 119.0 84 75.0
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 2.0e-25 119.0 84 72.6
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 2.6e-25 118.6 89 69.7
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.6e-25 118.6 89 73.0
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 2.6e-25 118.6 79 74.7
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 3.5e-25 118.2 93 62.4
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 4.5e-25 117.9 82 69.5
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 4.5e-25 117.9 85 71.8
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 4.5e-25 117.9 94 66.0
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 5.9e-25 117.5 92 70.7
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 5.9e-25 117.5 89 65.2
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 5.9e-25 117.5 93 68.8
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 5.9e-25 117.5 81 72.8
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 7.7e-25 117.1 94 66.0
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 7.7e-25 117.1 93 67.7
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.0e-24 116.7 84 73.8
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 1.0e-24 116.7 89 65.2
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 1.0e-24 116.7 91 68.1
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 2.2e-24 115.5 85 72.9
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 3.8e-24 114.8 85 71.8
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 3.8e-24 114.8 80 73.8
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 3.8e-24 114.8 89 65.2
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 5.0e-24 114.4 86 70.9
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 6.5e-24 114.0 90 64.4
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 6.5e-24 114.0 88 65.9
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 6.5e-24 114.0 89 70.8
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 6.5e-24 114.0 89 70.8
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 8.5e-24 113.6 92 66.3
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 1.5e-23 112.8 88 68.2
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 1.5e-23 112.8 88 68.2
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.9e-23 112.5 84 73.8
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 2.5e-23 112.1 86 70.9
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 2.5e-23 112.1 96 62.5
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 3.2e-23 111.7 81 69.1
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 3.2e-23 111.7 78 69.2
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 3.2e-23 111.7 92 63.0
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 4.2e-23 111.3 82 65.9
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 4.2e-23 111.3 91 61.5
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 4.2e-23 111.3 79 69.6
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 4.2e-23 111.3 96 66.7
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 5.5e-23 110.9 94 62.8
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 7.2e-23 110.5 78 74.4
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 7.2e-23 110.5 85 62.4
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 7.2e-23 110.5 101 63.4
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 7.2e-23 110.5 101 63.4
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 7.2e-23 110.5 88 64.8
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 2.1e-22 109.0 91 68.1
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 2.7e-22 108.6 84 69.0
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 2.7e-22 108.6 94 62.8
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 2.7e-22 108.6 84 66.7
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 6.1e-22 107.5 85 69.4
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 8.0e-22 107.1 76 72.4
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 1.4e-21 106.3 94 59.6
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 1.8e-21 105.9 91 65.9
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 1.8e-21 105.9 88 68.2
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 3.0e-21 105.1 91 64.8
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 5.2e-21 104.4 83 63.9
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 8.8e-21 103.6 67 79.1
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 8.8e-21 103.6 80 70.0
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 1.5e-20 102.8 80 70.0
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 2.6e-20 102.1 74 75.7
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 4.4e-20 101.3 76 72.4
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 1.3e-19 99.8 95 57.9
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.7e-19 99.4 69 66.7
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.7e-19 99.4 75 66.7
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.7e-19 98.2 78 64.1
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 4.8e-19 97.8 90 57.8
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 6.3e-19 97.4 82 59.8
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.1e-18 96.7 74 66.2
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 1.8e-18 95.9 77 66.2
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 1.8e-18 95.9 96 57.3
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.8e-18 95.9 80 62.5
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 2.4e-18 95.5 86 64.0
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 3.1e-18 95.1 84 66.7
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 5.3e-18 94.4 84 59.5
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 7.0e-18 94.0 84 65.5
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 1.6e-17 92.8 88 60.2
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.6e-17 92.8 73 65.8
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 3.5e-17 91.7 94 55.3
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 3.5e-17 91.7 94 55.3
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 5.9e-17 90.9 82 57.3
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 2.2e-16 89.0 85 60.0
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 2.2e-16 89.0 81 66.7
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 2.9e-16 88.6 82 64.6
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 2.9e-16 88.6 82 64.6
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 2.9e-16 88.6 76 65.8
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.2e-12 76.6 45 86.7
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.2e-12 76.6 85 51.8
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.0e-12 75.9 97 45.4
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.3e-11 73.2 86 52.3
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 2.8e-11 72.0 85 54.1
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 8.3e-11 70.5 76 57.9
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 5.4e-10 67.8 86 47.7
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 4.5e-09 64.7 75 52.0
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.9e-08 62.0 81 45.7
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.5e-07 59.7 57 56.1
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 2.1e-06 55.8 85 48.2
SEGI_25865 Sequoiadendron giganteum HOM05D000010 ORTHO05D004484 3.6e-06 55.1 79 44.3
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 4.7e-06 54.7 81 48.1


User provided reference genes

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