Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030391 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D030913 3.4e-42 174.5 81 100.0
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 2.8e-12 75.1 33 97.0
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 2.8e-12 75.1 33 97.0
Actinidia08226 Actinidia chinensis HOM05D001579 ORTHO05D030913 6.2e-12 73.9 35 88.6
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 1.1e-11 73.2 32 96.9
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 1.1e-11 73.2 33 93.9
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 2.3e-11 72.0 33 90.9
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 6.8e-11 70.5 33 84.8
Cc02_g25820 Coffea canephora HOM05D001579 ORTHO05D003470 8.9e-11 70.1 34 85.3
Nn1g01939 Nelumbo nucifera HOM05D001579 ORTHO05D003470 8.9e-11 70.1 33 87.9
Peaxi162Scf00016g00732 Petunia axillaris HOM05D001579 ORTHO05D003470 8.9e-11 70.1 34 85.3
Solyc02g090860.3 Solanum lycopersicum HOM05D001579 ORTHO05D003470 8.9e-11 70.1 33 84.8
Solyc10g007060.4 Solanum lycopersicum HOM05D001579 ORTHO05D003470 8.9e-11 70.1 33 84.8
Sopen02g035480 Solanum pennellii HOM05D001579 ORTHO05D003470 8.9e-11 70.1 33 84.8
Sopen10g002960 Solanum pennellii HOM05D001579 ORTHO05D003470 8.9e-11 70.1 33 84.8
PGSC0003DMG400004021 Solanum tuberosum HOM05D001579 ORTHO05D003470 8.9e-11 70.1 33 84.8
TAR376G1017 Trochodendron aralioides HOM05D001579 ORTHO05D003470 8.9e-11 70.1 33 87.9
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 8.9e-11 70.1 33 87.9
Nitab4.5_0000974g0080 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.2e-10 69.7 32 87.5
Nitab4.5_0011688g0020 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.2e-10 69.7 32 87.5
Hma1.2p1_3239F.1_g334310 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 1.5e-10 69.3 43 67.4
PGSC0003DMG400025010 Solanum tuberosum HOM05D001579 ORTHO05D003470 1.5e-10 69.3 33 81.8
Sc13g0008990 Simmondsia chinensis HOM05D001579 ORTHO05D003470 2.0e-10 68.9 33 84.8
CAN.G1298.23 Capsicum annuum HOM05D001579 ORTHO05D003470 2.6e-10 68.6 32 87.5
PGR042G0613 Punica granatum HOM05D001579 ORTHO05D003470 2.6e-10 68.6 33 84.8
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 3.4e-10 68.2 33 81.8
vmacro11113 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 3.4e-10 68.2 35 82.9
Atru.chr5.3017 Acer truncatum HOM05D001579 ORTHO05D003470 5.8e-10 67.4 33 81.8
Haze_02385 Corylus avellana HOM05D001579 ORTHO05D003470 5.8e-10 67.4 33 84.8
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 5.8e-10 67.4 32 84.4
CAN.G1412.7 Capsicum annuum HOM05D001579 ORTHO05D003470 7.5e-10 67.0 32 84.4
Hma1.2p1_0633F.1_g192550 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 7.5e-10 67.0 33 84.8
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 7.5e-10 67.0 33 84.8
MD05G1066200 Malus domestica HOM05D001579 ORTHO05D003470 7.5e-10 67.0 33 84.8
MD10G1076200 Malus domestica HOM05D001579 ORTHO05D003470 7.5e-10 67.0 33 84.8
ATR0051G048 Amborella trichopoda HOM05D001579 ORTHO05D003470 9.9e-10 66.6 52 59.6
Sed0021732 Sechium edule HOM05D001579 ORTHO05D003470 9.9e-10 66.6 33 81.8
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 9.9e-10 66.6 33 78.8
ATR1101G014 Amborella trichopoda HOM05D001579 ORTHO05D003470 1.3e-09 66.2 52 57.7
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 1.3e-09 66.2 33 78.8
CANSAT80G0427 Cannabis sativa HOM05D001579 ORTHO05D003470 2.2e-09 65.5 33 78.8
DCAR_006199 Daucus carota HOM05D001579 ORTHO05D003470 2.2e-09 65.5 34 79.4
Duzib248G0143 Durio zibethinus HOM05D001579 ORTHO05D003470 2.2e-09 65.5 35 77.1
Lalb_Chr03g0025691 Lupinus albus HOM05D001579 ORTHO05D003470 2.2e-09 65.5 32 78.1
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 2.9e-09 65.1 33 78.8
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 2.9e-09 65.1 32 78.1
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 2.9e-09 65.1 33 78.8
Lalb_Chr01g0002541 Lupinus albus HOM05D001579 ORTHO05D003470 2.9e-09 65.1 32 78.1
COL.COLO4_25932 Corchorus olitorius HOM05D001579 ORTHO05D003470 4.9e-09 64.3 34 76.5
Lj7A248G13 Lonicera japonica HOM05D001579 ORTHO05D003470 4.9e-09 64.3 33 81.8
Lj7A253G28 Lonicera japonica HOM05D001579 ORTHO05D003470 4.9e-09 64.3 33 81.8
Prupe.8G096800 Prunus persica HOM05D001579 ORTHO05D003470 4.9e-09 64.3 33 78.8
GSVIVG01031967001 Vitis vinifera HOM05D001579 ORTHO05D003470 4.9e-09 64.3 33 78.8
Lj2C359T3 Lonicera japonica HOM05D001579 ORTHO05D003470 6.4e-09 63.9 32 84.4
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 8.3e-09 63.5 32 78.1
Hund14641 Selenicereus undatus HOM05D001579 ORTHO05D003470 1.1e-08 63.2 33 78.8
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 1.4e-08 62.8 32 75.0
Cfa005003 Carpinus fangiana HOM05D001579 ORTHO05D003470 1.4e-08 62.8 32 78.1
CiPaw.05G064600 Carya illinoinensis HOM05D001579 ORTHO05D003470 1.4e-08 62.8 32 78.1
ClCG10G001880 Citrullus lanatus HOM05D001579 ORTHO05D003470 1.4e-08 62.8 34 73.5
Lj1g0020223 Lotus japonicus HOM05D001579 ORTHO05D003470 1.4e-08 62.8 32 75.0
Phvul.011G045200 Phaseolus vulgaris HOM05D001579 ORTHO05D003470 1.4e-08 62.8 32 75.0
Glyma.17G231300 Glycine max HOM05D001579 ORTHO05D003470 1.9e-08 62.4 32 75.0
VMungo1127G1806 Vigna mungo HOM05D001579 ORTHO05D003470 1.9e-08 62.4 32 75.0
MSTRG.16808 Avicennia marina HOM05D001579 ORTHO05D003470 3.2e-08 61.6 33 78.8
Duzib132G0542 Durio zibethinus HOM05D001579 ORTHO05D003470 3.2e-08 61.6 33 72.7
Glyma.12G043200 Glycine max HOM05D001579 ORTHO05D003470 3.2e-08 61.6 32 75.0
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 3.2e-08 61.6 33 72.7
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 3.2e-08 61.6 33 72.7
Gorai.012G155500 Gossypium raimondii HOM05D001579 ORTHO05D003470 3.2e-08 61.6 33 72.7
QL11p043704 Quercus lobata HOM05D001579 ORTHO05D003470 3.2e-08 61.6 33 78.8
Hund11566 Selenicereus undatus HOM05D001579 ORTHO05D003470 3.2e-08 61.6 33 75.8
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 3.2e-08 61.6 33 72.7
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 4.1e-08 61.2 32 75.0
MELO3C013873.2 Cucumis melo HOM05D001579 ORTHO05D003470 5.4e-08 60.8 33 72.7
CsaV3_3G002020 Cucumis sativus L. HOM05D001579 ORTHO05D003470 5.4e-08 60.8 33 72.7
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 5.4e-08 60.8 32 71.9
A09p57990 Brassica napus HOM05D001579 ORTHO05D003470 9.2e-08 60.1 31 74.2
BraA09t41189Z Brassica rapa HOM05D001579 ORTHO05D003470 9.2e-08 60.1 31 74.2
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 9.2e-08 60.1 32 71.9
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 9.2e-08 60.1 32 71.9
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 1.2e-07 59.7 31 74.2
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 1.2e-07 59.7 31 74.2
HanXRQChr14g0446281 Helianthus annuus HOM05D001579 ORTHO05D003470 1.2e-07 59.7 32 75.0
TPR.G23438 Trifolium pratense HOM05D001579 ORTHO05D003470 1.2e-07 59.7 32 78.1
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.6e-07 59.3 31 74.2
Migut.B00751 Erythranthe guttata HOM05D001579 ORTHO05D003470 1.6e-07 59.3 33 72.7
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 2.1e-07 58.9 31 71.0
Ah.12g056180 Amaranthus hybridus HOM05D001579 ORTHO05D003470 2.1e-07 58.9 33 72.7
Aqoxy7G01384 Aquilegia oxysepala HOM05D001579 ORTHO05D003470 2.1e-07 58.9 52 51.9
BcaC07g41119 Brassica carinata HOM05D001579 ORTHO05D003470 2.1e-07 58.9 31 71.0
C08p41200 Brassica napus HOM05D001579 ORTHO05D003470 2.1e-07 58.9 31 71.0
BolC8t51687H Brassica oleracea HOM05D001579 ORTHO05D003470 2.1e-07 58.9 31 71.0
Sp4g00870 Schrenkiella parvula HOM05D001579 ORTHO05D003470 2.1e-07 58.9 31 71.0
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 2.7e-07 58.5 31 71.0
Carub.0004s0076 Capsella rubella HOM05D001579 ORTHO05D003470 2.7e-07 58.5 30 73.3
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 3.5e-07 58.2 32 75.0
AUR62034190 Chenopodium quinoa HOM05D001579 ORTHO05D003470 3.5e-07 58.2 32 75.0
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 3.5e-07 58.2 33 72.7
AUR62040028 Chenopodium quinoa HOM05D004615 ORTHO05D000385 4.6e-07 57.8 48 54.2
Potri.009G116100 Populus trichocarpa HOM05D001579 ORTHO05D003470 4.6e-07 57.8 32 71.9
CDE04G1236 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 6.0e-07 57.4 52 51.9
BcaB01g00883 Brassica carinata HOM05D001579 ORTHO05D003470 1.0e-06 56.6 29 72.4
C09p46380 Brassica napus HOM05D001579 ORTHO05D003470 1.0e-06 56.6 29 72.4
Duzib052G0487 Durio zibethinus HOM05D001579 ORTHO05D003470 1.0e-06 56.6 33 66.7
Oeu041647.1 Olea europaea HOM05D001579 ORTHO05D003470 1.0e-06 56.6 34 67.6
SalBow6G0592 Salvia bowleyana HOM05D001579 ORTHO05D003470 1.0e-06 56.6 32 75.0
SalBow6G1678 Salvia bowleyana HOM05D001579 ORTHO05D003470 1.0e-06 56.6 32 75.0
Ah.02g117280 Amaranthus hybridus HOM05D001579 ORTHO05D003470 1.3e-06 56.2 32 71.9
CDE06G1318 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 1.3e-06 56.2 52 50.0
AUR62003165 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.3e-06 56.2 30 76.7
ECA240G1027 Erigeron canadensis HOM05D001579 ORTHO05D003470 1.3e-06 56.2 32 68.8
Potri.004G155000 Populus trichocarpa HOM05D001579 ORTHO05D003470 1.3e-06 56.2 34 67.6
BcaB06g27782 Brassica carinata HOM05D001579 ORTHO05D003470 1.7e-06 55.8 31 64.5
BcaB08g35003 Brassica carinata HOM05D001579 ORTHO05D003470 1.7e-06 55.8 31 64.5
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.7e-06 55.8 30 76.7
AUR62034498 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.7e-06 55.8 30 76.7
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 1.7e-06 55.8 32 68.8
FvH4_3g28200 Fragaria vesca HOM05D001579 ORTHO05D003470 3.9e-06 54.7 32 68.8
FAN11G3917 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.9e-06 54.7 32 68.8
FAN16G0460 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.9e-06 54.7 32 68.8
FAN21G0623 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.9e-06 54.7 32 68.8
AL7G31990 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 6.6e-06 53.9 31 67.7
BcaC02g08772 Brassica carinata HOM05D001579 ORTHO05D003470 6.6e-06 53.9 31 61.3
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 6.6e-06 53.9 31 61.3
C04p50830 Brassica napus HOM05D001579 ORTHO05D003470 6.6e-06 53.9 31 61.3
BraA04t17272Z Brassica rapa HOM05D001579 ORTHO05D003470 6.6e-06 53.9 31 61.3
SMO119G0093 Selaginella moellendorffii HOM05D001579 ORTHO05D003470 8.6e-06 53.5 38 57.9


User provided reference genes

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