Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030388 Camellia sinensis var. sinensis HOM05D003255 ORTHO05D003705 1.5e-130 469.5 243 100.0
CSS0029701 Camellia sinensis var. sinensis HOM05D003255 ORTHO05D003705 9.9e-98 360.5 230 86.5
vmacro12569 Vaccinium macrocarpon HOM05D003255 ORTHO05D003705 1.4e-67 260.4 238 63.0
Rhsim09G0004800 Rhododendron simsii HOM05D003255 ORTHO05D003705 2.9e-65 252.7 236 60.2
Cfa016436 Carpinus fangiana HOM05D003255 ORTHO05D003705 4.6e-63 245.4 227 63.9
Haze_19413 Corylus avellana HOM05D003255 ORTHO05D003705 1.8e-62 243.4 227 63.4
Dinv14582 Davidia involucrata HOM05D003255 ORTHO05D003705 3.9e-62 242.3 228 62.3
Manes.09G141900 Manihot esculenta HOM05D003255 ORTHO05D003705 5.1e-62 241.9 208 64.4
Atru.chr2.1363 Acer truncatum HOM05D003255 ORTHO05D003705 8.8e-62 241.1 233 58.8
CiPaw.10G000800 Carya illinoinensis HOM05D003255 ORTHO05D003705 1.5e-61 240.4 208 66.3
Cpa.g.sc51.109 Carica papaya HOM05D003255 ORTHO05D003705 2.5e-61 239.6 226 61.5
Actinidia30555 Actinidia chinensis HOM05D003255 ORTHO05D003705 7.4e-61 238.0 228 60.1
TWI32G0868 Tripterygium wilfordii HOM05D003255 ORTHO05D003705 2.2e-60 236.5 228 61.8
Ciclev10020997m.g Citrus clementina HOM05D003255 ORTHO05D003705 6.3e-60 235.0 244 58.2
MD17G1264700 Malus domestica HOM05D003255 ORTHO05D003705 8.2e-60 234.6 210 61.9
Prupe.3G114100 Prunus persica HOM05D003255 ORTHO05D003705 8.2e-60 234.6 211 62.6
COL.COLO4_13607 Corchorus olitorius HOM05D003255 ORTHO05D003705 1.8e-59 233.4 226 58.8
Duzib128G1885 Durio zibethinus HOM05D003255 ORTHO05D003705 1.8e-59 233.4 226 60.2
Potri.019G034100 Populus trichocarpa HOM05D003255 ORTHO05D003705 1.8e-59 233.4 208 61.5
Thecc.05G293900 Theobroma cacao HOM05D003255 ORTHO05D003705 5.3e-59 231.9 226 60.2
Gohir.D11G268900 Gossypium hirsutum HOM05D003255 ORTHO05D003705 6.9e-59 231.5 208 61.5
Gorai.007G288700 Gossypium raimondii HOM05D003255 ORTHO05D003705 6.9e-59 231.5 208 61.5
GSVIVG01033393001 Vitis vinifera HOM05D003255 ORTHO05D003705 1.2e-58 230.7 209 62.7
FvH4_6g27680 Fragaria vesca HOM05D003255 ORTHO05D003705 1.5e-58 230.3 210 61.4
FAN05G4616 Fragaria x ananassa HOM05D003255 ORTHO05D003705 1.5e-58 230.3 210 61.4
FAN14G1820 Fragaria x ananassa HOM05D003255 ORTHO05D003705 1.5e-58 230.3 210 61.4
FAN09G1185 Fragaria x ananassa HOM05D003255 ORTHO05D003705 3.4e-58 229.2 210 61.0
Hma1.2p1_0152F.1_g067770 Hydrangea macrophylla HOM05D003255 ORTHO05D003705 3.4e-58 229.2 226 60.6
Sabra19G0042000 Salix brachista HOM05D003255 ORTHO05D003705 3.4e-58 229.2 208 62.5
PSO339G4182 Papaver somniferum HOM05D003255 ORTHO05D003705 1.3e-57 227.3 200 61.0
RcHm_v2.0_Chr2g0130821 Rosa chinensis HOM05D003255 ORTHO05D003705 1.3e-57 227.3 210 61.0
FAN02G2038 Fragaria x ananassa HOM05D003255 ORTHO05D006458 2.9e-57 226.1 210 60.0
PSO384G0936 Papaver somniferum HOM05D003255 ORTHO05D003705 3.8e-57 225.7 200 60.0
Lj1A1137T81 Lonicera japonica HOM05D003255 ORTHO05D003705 6.5e-57 224.9 229 57.2
Gohir.A11G258800 Gossypium hirsutum HOM05D003255 ORTHO05D003705 1.1e-56 224.2 208 60.1
TAR623G0824 Trochodendron aralioides HOM05D003255 ORTHO05D003705 1.1e-56 224.2 197 61.4
QL07p019702 Quercus lobata HOM05D003255 ORTHO05D003705 4.2e-56 222.2 212 61.8
Nitab4.5_0002825g0020 Nicotiana tabacum HOM05D003255 ORTHO05D003705 1.2e-55 220.7 213 58.2
Aqoxy2G00585 Aquilegia oxysepala HOM05D003255 ORTHO05D003705 4.7e-55 218.8 229 55.5
Nitab4.5_0000001g0080 Nicotiana tabacum HOM05D003255 ORTHO05D003705 4.7e-55 218.8 212 58.0
PGR142G0348 Punica granatum HOM05D003255 ORTHO05D003705 1.0e-54 217.6 227 55.1
Lalb_Chr22g0359271 Lupinus albus HOM05D003255 ORTHO05D003705 3.0e-54 216.1 227 57.3
Oeu012405.1 Olea europaea HOM05D003255 ORTHO05D003705 3.0e-54 216.1 227 55.1
PGSC0003DMG400008639 Solanum tuberosum HOM05D003255 ORTHO05D003705 5.1e-54 215.3 215 58.1
Solyc03g062720.3 Solanum lycopersicum HOM05D003255 ORTHO05D003705 8.8e-54 214.5 218 56.9
Sopen03g015030 Solanum pennellii HOM05D003255 ORTHO05D003705 8.8e-54 214.5 218 56.9
Glyma.19G110700 Glycine max HOM05D003255 ORTHO05D003705 1.1e-53 214.2 208 59.6
CAN.G317.15 Capsicum annuum HOM05D003255 ORTHO05D003705 2.0e-53 213.4 208 58.2
SalBow6G7123 Salvia bowleyana HOM05D003255 ORTHO05D003705 2.6e-53 213.0 226 54.9
Nn7g35822 Nelumbo nucifera HOM05D003255 ORTHO05D003705 5.7e-53 211.8 182 63.2
arahy.Tifrunner.gnm1.ann1.1MDK5L Arachis hypogaea HOM05D003255 ORTHO05D003705 1.7e-52 210.3 226 55.8
Lj1g0023757 Lotus japonicus HOM05D003255 ORTHO05D003705 1.7e-52 210.3 227 55.9
Peaxi162Scf00076g01039 Petunia axillaris HOM05D003255 ORTHO05D003705 2.2e-52 209.9 226 55.3
Phvul.001G110100 Phaseolus vulgaris HOM05D003255 ORTHO05D003705 2.8e-52 209.5 233 53.6
Migut.J01892 Erythranthe guttata HOM05D003255 ORTHO05D003705 8.2e-52 208.0 213 56.3
arahy.Tifrunner.gnm1.ann1.G0TJBI Arachis hypogaea HOM05D003255 ORTHO05D003705 1.1e-51 207.6 226 54.9
Cc06_g22890 Coffea canephora HOM05D003255 ORTHO05D003705 1.4e-51 207.2 215 54.9
THA.LOC104805763 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 1.8e-51 206.8 216 56.9
CsaV3_3G043290 Cucumis sativus L. HOM05D003255 ORTHO05D003705 3.1e-51 206.1 195 56.4
Glyma.16G041700 Glycine max HOM05D003255 ORTHO05D003705 3.1e-51 206.1 212 58.0
Psat3g089080 Pisum sativum HOM05D003255 ORTHO05D003705 3.1e-51 206.1 226 55.3
VMungo1383G0405 Vigna mungo HOM05D003255 ORTHO05D003705 7.0e-51 204.9 233 53.2
Medtr7g085490 Medicago truncatula HOM05D003255 ORTHO05D003705 9.1e-51 204.5 226 54.9
HanXRQChr02g0054161 Helianthus annuus HOM05D003255 ORTHO05D003705 2.0e-50 203.4 215 54.4
MELO3C026889.2 Cucumis melo HOM05D003255 ORTHO05D003705 5.9e-50 201.8 195 54.9
AUR62032686 Chenopodium quinoa HOM05D003255 ORTHO05D003705 1.0e-49 201.1 220 53.2
unitig_746.g26891 Utricularia gibba HOM05D000423 ORTHO05D000284 1.0e-49 201.1 228 52.2
AUR62032061 Chenopodium quinoa HOM05D003255 ORTHO05D003705 2.2e-49 199.9 237 51.5
A06p48260 Brassica napus HOM05D003255 ORTHO05D003705 2.9e-49 199.5 213 55.4
BraA06t27695Z Brassica rapa HOM05D003255 ORTHO05D003705 2.9e-49 199.5 213 55.4
Ah.04g153230 Amaranthus hybridus HOM05D003255 ORTHO05D003705 3.8e-49 199.1 248 48.8
AT1G64770 Arabidopsis thaliana HOM05D003255 ORTHO05D003705 5.0e-49 198.7 210 53.3
ECA233G1992 Erigeron canadensis HOM05D003255 ORTHO05D003705 8.5e-49 198.0 227 52.4
Sed0025392 Sechium edule HOM05D003255 ORTHO05D003705 8.5e-49 198.0 197 53.3
Eucgr.K01497 Eucalyptus grandis HOM05D003255 ORTHO05D003705 1.1e-48 197.6 189 56.6
BcaC06g31750 Brassica carinata HOM05D003255 ORTHO05D003705 1.5e-48 197.2 233 52.4
Thhalv10018808m.g Eutrema salsugineum HOM05D003255 ORTHO05D003705 1.9e-48 196.8 210 52.4
AL2G19130 Arabidopsis lyrata HOM05D003255 ORTHO05D003705 3.2e-48 196.1 215 53.5
EL10Ac3g06815 Beta vulgaris HOM05D003255 ORTHO05D003705 3.2e-48 196.1 222 52.7
Carub.0002s0974 Capsella rubella HOM05D003255 ORTHO05D003705 4.2e-48 195.7 214 51.4
Sp2g07380 Schrenkiella parvula HOM05D003255 ORTHO05D003705 5.5e-48 195.3 213 53.5
CANSAT78G2239 Cannabis sativa HOM05D003255 ORTHO05D003705 7.2e-48 194.9 204 53.9
Lsat_1_v5_gn_6_36921 Lactuca sativa HOM05D003255 ORTHO05D003705 1.2e-47 194.1 200 57.0
TPR.G5890 Trifolium pratense HOM05D003255 ORTHO05D003705 1.6e-47 193.7 210 55.7
Ca_08260_v3 Cicer arietinum L. HOM05D003255 ORTHO05D003705 3.6e-47 192.6 193 56.5
Os03g0158300 Oryza sativa ssp. japonica HOM05D003255 ORTHO05D003705 4.7e-47 192.2 204 52.9
BcaC02g10774 Brassica carinata HOM05D003255 ORTHO05D003705 1.0e-46 191.0 235 51.1
C04p25200 Brassica napus HOM05D003255 ORTHO05D003705 1.0e-46 191.0 235 51.1
BolC4t24025H Brassica oleracea HOM05D003255 ORTHO05D003705 1.0e-46 191.0 235 51.1
Actinidia22086 Actinidia chinensis HOM05D003255 ORTHO05D003705 3.9e-46 189.1 155 64.5
CARHR287400 Cardamine hirsuta HOM05D003255 ORTHO05D003705 5.2e-46 188.7 213 49.3
ClCG10G013330 Citrullus lanatus HOM05D003255 ORTHO05D003705 8.8e-46 188.0 197 53.8
Zm00001eb403240 Zea mays HOM05D003255 ORTHO05D003705 8.8e-46 188.0 211 50.7
CDE05G3425 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 4.4e-45 185.7 228 47.4
ATR0697G035 Amborella trichopoda HOM05D003255 ORTHO05D003705 5.3e-43 178.7 200 51.0
Aa31LG2G1910 Aethionema arabicum HOM05D003255 ORTHO05D003705 1.2e-42 177.6 169 55.6
Zm00001eb004410 Zea mays HOM05D003255 ORTHO05D003705 1.2e-42 177.6 169 57.4
CDE01G0333 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 2.3e-38 163.3 150 56.7
DCAR_013690 Daucus carota HOM05D003255 ORTHO05D003705 7.0e-35 151.8 180 51.1
Rhsim03G0005300 Rhododendron simsii HOM05D003255 ORTHO05D003705 1.7e-33 147.1 206 48.5
Rhsim03G0001400 Rhododendron simsii HOM05D003255 ORTHO05D003705 2.5e-32 143.3 153 53.6
Carub.0002s0972 Capsella rubella HOM05D003255 ORTHO05D003705 1.8e-30 137.1 210 44.3
Hund24838 Selenicereus undatus HOM05D003255 ORTHO05D003705 1.7e-20 104.0 170 42.9
SEGI_06106 Sequoiadendron giganteum HOM05D003255 ORTHO05D003705 7.0e-19 98.6 184 35.9
AagrBONN_evm.TU.Sc2ySwM_368.2197 Anthoceros agrestis HOM05D003255 ORTHO05D003705 1.0e-17 94.7 191 35.1
CANSAT56G4486 Cannabis sativa HOM05D003255 ORTHO05D003705 5.0e-17 92.4 174 31.0
Mapoly0135s0022 Marchantia polymorpha HOM05D003255 ORTHO05D003705 1.6e-15 87.4 201 28.9
THA.LOC104814754 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 8.0e-15 85.1 56 73.2
Peaxi162Scf00076g01038 Petunia axillaris HOM05D003255 ORTHO05D003705 1.8e-14 84.0 188 27.7
Thecc.05G293800 Theobroma cacao HOM05D003255 ORTHO05D003705 1.5e-13 80.9 180 27.2
Potri.019G034000 Populus trichocarpa HOM05D003255 ORTHO05D003705 3.4e-13 79.7 166 30.1
Sabra19G0041900 Salix brachista HOM05D003255 ORTHO05D003705 1.7e-12 77.4 166 29.5
Duzib128G0833 Durio zibethinus HOM05D003255 ORTHO05D003705 3.7e-12 76.3 166 30.1
Aqoxy2G00586 Aquilegia oxysepala HOM05D003255 ORTHO05D003705 4.9e-12 75.9 167 31.1
AagrBONN_evm.TU.Sc2ySwM_368.2200 Anthoceros agrestis HOM05D003255 ORTHO05D003705 8.3e-12 75.1 186 31.7
PGSC0003DMG400008640 Solanum tuberosum HOM05D003255 ORTHO05D003705 2.4e-11 73.6 183 27.3
TWI60G0442 Tripterygium wilfordii HOM05D003255 ORTHO05D003705 4.1e-11 72.8 166 25.9
Eucgr.K01496 Eucalyptus grandis HOM05D003255 ORTHO05D003705 5.4e-11 72.4 176 29.0
QL07p019728 Quercus lobata HOM05D003255 ORTHO05D003705 5.4e-11 72.4 169 27.8
QL07p020062 Quercus lobata HOM05D003255 ORTHO05D003705 5.4e-11 72.4 169 27.8
CiPaw.10G000700 Carya illinoinensis HOM05D003255 ORTHO05D003705 7.0e-11 72.0 173 26.6
Sopen03g015020 Solanum pennellii HOM05D003255 ORTHO05D003705 7.0e-11 72.0 200 26.5
Nn7g35823 Nelumbo nucifera HOM05D003255 ORTHO05D003705 1.2e-10 71.2 181 26.5
CAN.G317.14 Capsicum annuum HOM05D003255 ORTHO05D003705 1.6e-10 70.9 183 26.2
Gohir.A11G258700 Gossypium hirsutum HOM05D003255 ORTHO05D003705 1.6e-10 70.9 160 27.5
Gohir.D11G268800 Gossypium hirsutum HOM05D003255 ORTHO05D003705 1.6e-10 70.9 166 27.7
Gorai.007G288600 Gossypium raimondii HOM05D003255 ORTHO05D003705 1.6e-10 70.9 166 27.7
Solyc03g062710.4 Solanum lycopersicum HOM05D003255 ORTHO05D003705 2.0e-10 70.5 211 26.1
PGR142G1693 Punica granatum HOM05D003255 ORTHO05D003705 2.7e-10 70.1 210 28.6
Cpa.g.sc51.108 Carica papaya HOM05D003255 ORTHO05D003705 3.5e-10 69.7 172 26.2
Phvul.004G079500 Phaseolus vulgaris HOM05D003255 ORTHO05D003705 4.6e-10 69.3 206 25.2
Glyma.16G153000 Glycine max HOM05D003255 ORTHO05D003705 6.0e-10 68.9 175 26.3
Rhsim11G0022200 Rhododendron simsii HOM05D003255 ORTHO05D003705 3.9e-09 66.2 55 58.2
CDE02G4790 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 8.6e-09 65.1 113 35.4
Ciclev10020539m.g Citrus clementina HOM05D003255 ORTHO05D003705 1.5e-08 64.3 180 26.7
AL1G63430 Arabidopsis lyrata HOM05D003255 ORTHO05D003705 2.5e-08 63.5 176 26.7
Cc06_g22880 Coffea canephora HOM05D003255 ORTHO05D003705 2.5e-08 63.5 138 27.5
unitig_37.g12787 Utricularia gibba HOM05D003255 ORTHO05D003705 2.5e-08 63.5 196 28.1
VMungo0464G0063 Vigna mungo HOM05D003255 ORTHO05D003705 4.3e-08 62.8 206 24.3
Carub.0001s4389 Capsella rubella HOM05D003255 ORTHO05D003705 3.6e-07 59.7 175 28.0
CARHR045040 Cardamine hirsuta HOM05D003255 ORTHO05D003705 4.7e-07 59.3 178 27.5
Thhalv10011597m.g Eutrema salsugineum HOM05D003255 ORTHO05D003705 4.7e-07 59.3 177 28.2
ATR0697G052 Amborella trichopoda HOM05D003255 ORTHO05D003705 8.0e-07 58.5 199 25.1
AT1G55370 Arabidopsis thaliana HOM05D003255 ORTHO05D003705 8.0e-07 58.5 175 27.4
Sp1g41050 Schrenkiella parvula HOM05D003255 ORTHO05D003705 1.1e-06 58.2 160 27.5


User provided reference genes

Program Settings