Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030372 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 3.7e-67 258.1 130 100.0
CSS0029567 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 2.1e-54 215.7 130 86.2
CSS0045169 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 2.1e-54 215.7 130 86.2
CSS0048603 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 3.6e-38 161.8 133 66.2
CSS0049937 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 1.4e-37 159.8 135 68.9
CSS0049796 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 1.1e-34 150.2 131 67.2
Actinidia32657 Actinidia chinensis HOM05D002350 ORTHO05D000091 1.9e-34 149.4 138 58.7
Dinv41662 Davidia involucrata HOM05D002350 ORTHO05D000091 9.5e-31 137.1 113 63.7
Rhsim03G0237500 Rhododendron simsii HOM05D002350 ORTHO05D000091 6.2e-30 134.4 112 61.6
vmacro06244 Vaccinium macrocarpon HOM05D002350 ORTHO05D000091 1.3e-27 126.7 121 57.0
Lj7C663T4 Lonicera japonica HOM05D002350 ORTHO05D000091 2.2e-27 125.9 113 60.2
Lj4C392G1 Lonicera japonica HOM05D002350 ORTHO05D000091 1.6e-25 119.8 113 55.8
Solyc06g051190.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 1.6e-25 119.8 135 46.7
Sopen06g017040 Solanum pennellii HOM05D002350 ORTHO05D000091 2.1e-25 119.4 133 47.4
TAR624G0594 Trochodendron aralioides HOM05D002350 ORTHO05D000091 6.6e-24 114.4 109 56.0
Nitab4.5_0001354g0030 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.5e-23 113.2 93 57.0
Nitab4.5_0000165g0050 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.9e-23 112.8 93 57.0
ECA234G0874 Erigeron canadensis HOM05D002350 ORTHO05D000091 9.5e-23 110.5 106 56.6
Lj4C391G5 Lonicera japonica HOM05D002350 ORTHO05D000091 9.5e-23 110.5 113 53.1
PSO832G0190 Papaver somniferum HOM05D002350 ORTHO05D000091 1.2e-22 110.2 79 62.0
Oeu064188.1 Olea europaea HOM05D002350 ORTHO05D000091 1.6e-22 109.8 110 51.8
SGA_v2.0_scaffold501G52502 Striga asiatica HOM05D002350 ORTHO05D000091 2.1e-22 109.4 139 41.0
DCAR_018431 Daucus carota HOM05D002350 ORTHO05D000091 2.8e-22 109.0 112 53.6
Migut.N01382 Erythranthe guttata HOM05D002350 ORTHO05D000091 2.8e-22 109.0 113 48.7
CAN.G1642.9 Capsicum annuum HOM05D002350 ORTHO05D000091 4.7e-22 108.2 116 52.6
Peaxi162Scf00824g00113 Petunia axillaris HOM05D002350 ORTHO05D000091 8.1e-22 107.5 112 50.0
HanXRQChr16g0507611 Helianthus annuus HOM05D002350 ORTHO05D000091 1.1e-21 107.1 110 50.0
Peaxi162Scf00665g00310 Petunia axillaris HOM05D002350 ORTHO05D000091 4.0e-21 105.1 111 53.2
Cc06_g10350 Coffea canephora HOM05D002350 ORTHO05D000091 8.9e-21 104.0 91 58.2
MSTRG.10607 Avicennia marina HOM05D002350 ORTHO05D000091 1.5e-20 103.2 113 48.7
Nn8g39091 Nelumbo nucifera HOM05D002350 ORTHO05D000091 1.5e-20 103.2 113 50.4
Sopen12g003370 Solanum pennellii HOM05D002350 ORTHO05D000091 1.5e-20 103.2 111 52.3
COL.COLO4_34763 Corchorus olitorius HOM05D002350 ORTHO05D000091 2.6e-20 102.4 112 49.1
Haze_25814 Corylus avellana HOM05D002350 ORTHO05D000091 3.4e-20 102.1 149 43.0
PGSC0003DMG402000361 Solanum tuberosum HOM05D002350 ORTHO05D000091 4.4e-20 101.7 111 52.3
Thecc.09G101800 Theobroma cacao HOM05D002350 ORTHO05D000091 4.4e-20 101.7 113 47.8
HanXRQChr16g0503771 Helianthus annuus HOM05D002350 ORTHO05D000091 7.6e-20 100.9 89 57.3
Nitab4.5_0011131g0010 Nicotiana tabacum HOM05D002350 ORTHO05D000091 7.6e-20 100.9 89 56.2
TAR624G0664 Trochodendron aralioides HOM05D002350 ORTHO05D000091 7.6e-20 100.9 108 51.9
Nitab4.5_0000566g0160 Nicotiana tabacum HOM05D002350 ORTHO05D000091 9.9e-20 100.5 111 52.3
Cfa003194 Carpinus fangiana HOM05D002350 ORTHO05D000091 1.3e-19 100.1 111 49.5
Atru.chr7.1447 Acer truncatum HOM05D002350 ORTHO05D000091 2.9e-19 99.0 137 44.5
CAN.G160.38 Capsicum annuum HOM05D002350 ORTHO05D000091 2.9e-19 99.0 112 50.0
Duzib150G1289 Durio zibethinus HOM05D002350 ORTHO05D000091 3.8e-19 98.6 128 41.4
HanXRQChr16g0503801 Helianthus annuus HOM05D002350 ORTHO05D000091 3.8e-19 98.6 110 50.0
Duzib168G1106 Durio zibethinus HOM05D002350 ORTHO05D000091 4.9e-19 98.2 130 43.1
Oeu064190.1 Olea europaea HOM05D002350 ORTHO05D000091 6.4e-19 97.8 73 63.0
ECA236G2339 Erigeron canadensis HOM05D002350 ORTHO05D000091 8.4e-19 97.4 112 45.5
Potri.007G081300 Populus trichocarpa HOM05D002350 ORTHO05D000091 1.1e-18 97.1 130 46.2
Cfa003192 Carpinus fangiana HOM05D002350 ORTHO05D000091 1.9e-18 96.3 111 47.7
Cc06_g10360 Coffea canephora HOM05D002350 ORTHO05D000091 3.2e-18 95.5 92 54.3
DCAR_018379 Daucus carota HOM05D002350 ORTHO05D000091 4.2e-18 95.1 104 50.0
GSVIVG01015313001 Vitis vinifera HOM05D002350 ORTHO05D000091 4.2e-18 95.1 91 51.6
Potri.006G164400 Populus trichocarpa HOM05D002350 ORTHO05D000091 5.4e-18 94.7 101 50.5
Lsat_1_v5_gn_5_144600 Lactuca sativa HOM05D002350 ORTHO05D000091 7.1e-18 94.4 104 51.0
Aqoxy7G03876 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 1.2e-17 93.6 101 47.5
Migut.K00531 Erythranthe guttata HOM05D002350 ORTHO05D000091 1.6e-17 93.2 111 43.2
Sabra06G0125300 Salix brachista HOM05D002350 ORTHO05D000091 2.1e-17 92.8 106 49.1
Haze_25813 Corylus avellana HOM05D002350 ORTHO05D000091 2.7e-17 92.4 111 47.7
Ciclev10007331m.g Citrus clementina HOM05D002350 ORTHO05D000091 4.6e-17 91.7 104 52.9
Sed0013258 Sechium edule HOM05D002350 ORTHO05D000091 7.8e-17 90.9 104 47.1
Hund26256 Selenicereus undatus HOM05D002350 ORTHO05D000091 7.8e-17 90.9 95 45.3
MELO3C015406.2 Cucumis melo HOM05D002350 ORTHO05D000091 1.0e-16 90.5 104 49.0
Aqoxy6G02290 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 1.3e-16 90.1 73 57.5
Duzib168G2169 Durio zibethinus HOM05D002350 ORTHO05D000091 1.3e-16 90.1 112 45.5
MD15G1195400 Malus domestica HOM05D002350 ORTHO05D000091 1.3e-16 90.1 111 43.2
SalBow5G3880 Salvia bowleyana HOM05D002350 ORTHO05D000091 1.7e-16 89.7 107 41.1
CiPaw.03G226000 Carya illinoinensis HOM05D002350 ORTHO05D000091 2.3e-16 89.4 79 55.7
Lj2g0003052 Lotus japonicus HOM05D002350 ORTHO05D000091 2.3e-16 89.4 106 46.2
CsaV3_1G039730 Cucumis sativus L. HOM05D002350 ORTHO05D000091 3.0e-16 89.0 104 48.1
PGR102G2642 Punica granatum HOM05D002350 ORTHO05D000091 3.0e-16 89.0 91 45.1
VMungo0464G0493 Vigna mungo HOM05D002350 ORTHO05D000091 3.0e-16 89.0 129 41.1
Gorai.001G008800 Gossypium raimondii HOM05D002350 ORTHO05D000091 1.1e-15 87.0 112 44.6
Gohir.D07G008700 Gossypium hirsutum HOM05D002350 ORTHO05D000091 1.5e-15 86.7 112 44.6
Phvul.004G176400 Phaseolus vulgaris HOM05D002350 ORTHO05D000091 1.5e-15 86.7 129 40.3
Manes.16G110000 Manihot esculenta HOM05D002350 ORTHO05D000091 3.3e-15 85.5 105 42.9
ATR0705G139 Amborella trichopoda HOM05D002350 ORTHO05D000091 4.3e-15 85.1 132 39.4
DCAR_010692 Daucus carota HOM05D002350 ORTHO05D000091 9.6e-15 84.0 110 42.7
Thhalv10001897m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 9.6e-15 84.0 112 41.1
QL02p042039 Quercus lobata HOM05D002350 ORTHO05D000091 9.6e-15 84.0 63 63.5
arahy.Tifrunner.gnm1.ann1.2RFB5Y Arachis hypogaea HOM05D002350 ORTHO05D000091 1.6e-14 83.2 109 44.0
C07p01760 Brassica napus HOM05D002350 ORTHO05D000091 1.6e-14 83.2 75 54.7
Carub.0003s3418 Capsella rubella HOM05D002350 ORTHO05D000091 2.1e-14 82.8 112 40.2
CARHR110370 Cardamine hirsuta HOM05D002350 ORTHO05D000091 2.1e-14 82.8 73 53.4
Lalb_Chr14g0371831 Lupinus albus HOM05D002350 ORTHO05D000091 2.1e-14 82.8 103 42.7
Gohir.A07G008300 Gossypium hirsutum HOM05D002350 ORTHO05D000091 2.8e-14 82.4 112 43.8
AL3G48270 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 4.8e-14 81.6 112 39.3
arahy.Tifrunner.gnm1.ann1.7X0VYH Arachis hypogaea HOM05D002350 ORTHO05D000091 4.8e-14 81.6 122 41.8
CANSAT56G1437 Cannabis sativa HOM05D002350 ORTHO05D000091 4.8e-14 81.6 123 38.2
BcaC06g36656 Brassica carinata HOM05D002350 ORTHO05D000091 6.2e-14 81.3 75 53.3
BolC7t40580H Brassica oleracea HOM05D002350 ORTHO05D000091 6.2e-14 81.3 75 53.3
PSO210G7085 Papaver somniferum HOM05D002350 ORTHO05D000091 8.1e-14 80.9 79 49.4
BcaB03g16779 Brassica carinata HOM05D002350 ORTHO05D000091 1.1e-13 80.5 112 42.0
BcaC07g41231 Brassica carinata HOM05D002350 ORTHO05D000091 1.1e-13 80.5 110 40.9
C08p42360 Brassica napus HOM05D002350 ORTHO05D000091 1.1e-13 80.5 110 40.9
BraA07t27871Z Brassica rapa HOM05D002350 ORTHO05D000091 1.1e-13 80.5 75 54.7
PSO210G2001 Papaver somniferum HOM05D002350 ORTHO05D000091 1.1e-13 80.5 79 49.4
AT2G19930 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 1.4e-13 80.1 112 40.2
EL10Ac8g18397 Beta vulgaris HOM05D002350 ORTHO05D000091 1.4e-13 80.1 68 54.4
BcaC06g36654 Brassica carinata HOM05D002350 ORTHO05D000091 1.4e-13 80.1 112 41.1
A07p00780 Brassica napus HOM05D002350 ORTHO05D000091 1.4e-13 80.1 112 41.1
C07p01790 Brassica napus HOM05D002350 ORTHO05D000091 1.4e-13 80.1 112 41.1
BolC7t40582H Brassica oleracea HOM05D002350 ORTHO05D000091 1.4e-13 80.1 112 41.1
BraA07t27876Z Brassica rapa HOM05D002350 ORTHO05D000091 1.4e-13 80.1 112 41.1
AL3G48290 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 1.8e-13 79.7 111 39.6
arahy.Tifrunner.gnm1.ann1.9LQV7C Arachis hypogaea HOM05D002350 ORTHO05D000091 1.8e-13 79.7 122 41.0
BraA07t27873Z Brassica rapa HOM05D002350 ORTHO05D000091 1.8e-13 79.7 75 52.0
AUR62021426 Chenopodium quinoa HOM05D002350 ORTHO05D000091 2.4e-13 79.3 66 53.0
Psat1g046880 Pisum sativum HOM05D002350 ORTHO05D000091 2.4e-13 79.3 117 38.5
BraA10t43806Z Brassica rapa HOM05D002350 ORTHO05D000091 3.1e-13 79.0 109 40.4
A09p59080 Brassica napus HOM05D002350 ORTHO05D000091 4.0e-13 78.6 73 50.7
Prupe.7G221200 Prunus persica HOM05D002350 ORTHO05D000091 4.0e-13 78.6 94 43.6
BcaB03g16778 Brassica carinata HOM05D002350 ORTHO05D000091 5.3e-13 78.2 112 39.3
A10p17220 Brassica napus HOM05D002350 ORTHO05D000091 5.3e-13 78.2 109 40.4
Medtr6g088660 Medicago truncatula HOM05D002350 ORTHO05D000091 5.3e-13 78.2 105 43.8
arahy.Tifrunner.gnm1.ann1.HAD3B9 Arachis hypogaea HOM05D002350 ORTHO05D000091 6.9e-13 77.8 122 40.2
BcaC06g36662 Brassica carinata HOM05D002350 ORTHO05D000091 9.0e-13 77.4 75 52.0
BolC7t40573H Brassica oleracea HOM05D002350 ORTHO05D000091 9.0e-13 77.4 75 52.0
BraA09t41291Z Brassica rapa HOM05D002350 ORTHO05D000091 9.0e-13 77.4 73 49.3
Eucgr.C03764 Eucalyptus grandis HOM05D002350 ORTHO05D000091 9.0e-13 77.4 94 41.5
Thhalv10001896m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 9.0e-13 77.4 75 49.3
BcaB08g34892 Brassica carinata HOM05D002350 ORTHO05D000091 1.2e-12 77.0 84 45.2
Sp3g33240 Schrenkiella parvula HOM05D002350 ORTHO05D000091 1.2e-12 77.0 75 50.7
CANSAT56G4254 Cannabis sativa HOM05D002350 ORTHO05D000091 1.5e-12 76.6 112 41.1
Cpa.g.sc40.69 Carica papaya HOM05D002350 ORTHO05D000091 1.5e-12 76.6 113 42.5
AT2G19920 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 2.0e-12 76.3 73 49.3
Glyma.01G008700 Glycine max HOM05D002350 ORTHO05D000091 2.0e-12 76.3 107 41.1
Sc08g0007950 Simmondsia chinensis HOM05D002350 ORTHO05D000091 2.0e-12 76.3 68 54.4
Aa31LG8G16870 Aethionema arabicum HOM05D002350 ORTHO05D000091 3.4e-12 75.5 69 53.6
Carub.0003s3417 Capsella rubella HOM05D002350 ORTHO05D000091 4.4e-12 75.1 81 45.7
Sabra06G0136400 Salix brachista HOM05D002350 ORTHO05D000091 4.4e-12 75.1 81 49.4
TPR.G21372 Trifolium pratense HOM05D002350 ORTHO05D000091 4.4e-12 75.1 103 42.7
FAN19G1217 Fragaria x ananassa HOM05D002350 ORTHO05D000091 5.8e-12 74.7 83 47.0
AL3G48310 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 7.6e-12 74.3 79 46.8
Ah.14g083290 Amaranthus hybridus HOM05D002350 ORTHO05D000091 9.9e-12 73.9 71 47.9
C07p01730 Brassica napus HOM05D002350 ORTHO05D000091 9.9e-12 73.9 77 46.8
RcHm_v2.0_Chr2g0091711 Rosa chinensis HOM05D002350 ORTHO05D000091 1.3e-11 73.6 101 43.6
FvH4_1g05980 Fragaria vesca HOM05D002350 ORTHO05D000091 1.7e-11 73.2 83 45.8
AT2G19910 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 2.2e-11 72.8 79 45.6
FAN23G2545 Fragaria x ananassa HOM05D002350 ORTHO05D000091 2.9e-11 72.4 83 47.0
FAN26G1444 Fragaria x ananassa HOM05D002350 ORTHO05D000091 2.9e-11 72.4 83 47.0
FAN26G3334 Fragaria x ananassa HOM05D002350 ORTHO05D000091 2.9e-11 72.4 83 47.0
SEGI_17992 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 6.4e-11 71.2 131 37.4
Ca_25564_v3 Cicer arietinum L. HOM05D002350 ORTHO05D000091 8.4e-11 70.9 77 44.2
FvH4_1g05990 Fragaria vesca HOM05D002350 ORTHO05D000091 8.4e-11 70.9 105 38.1
FAN19G2534 Fragaria x ananassa HOM05D002350 ORTHO05D000091 8.4e-11 70.9 105 38.1
SEGI_05646 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 1.1e-10 70.5 110 38.2
EL10Ac8g18396 Beta vulgaris HOM05D002350 ORTHO05D000091 1.4e-10 70.1 77 48.1
AUR62042309 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.4e-10 70.1 66 53.0
ClCG03G016200 Citrullus lanatus HOM05D002350 ORTHO05D000091 4.2e-10 68.6 104 43.3
Lsat_1_v5_gn_8_96860 Lactuca sativa HOM05D002350 ORTHO05D000091 5.4e-10 68.2 112 35.7
MD02G1064400 Malus domestica HOM05D002350 ORTHO05D000091 7.1e-10 67.8 129 37.2
MBI04_g30106_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 1.6e-09 66.6 100 39.0
CDE05G2422 Ceratophyllum demersum HOM05D002350 ORTHO05D000091 2.1e-09 66.2 54 55.6
AagrBONN_evm.TU.Sc2ySwM_368.2512 Anthoceros agrestis HOM05D002350 ORTHO05D000091 2.7e-09 65.9 73 47.9
AUR62010903 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.0e-08 63.9 77 44.2
THA.LOC104808318 Tarenaya hassleriana HOM05D002350 ORTHO05D000091 3.9e-08 62.0 114 33.3
Hund09132 Selenicereus undatus HOM05D002350 ORTHO05D000091 5.1e-08 61.6 84 41.7
BcaB03g16780 Brassica carinata HOM05D002350 ORTHO05D000091 1.1e-07 60.5 84 41.7
AUR62021424 Chenopodium quinoa HOM05D002350 ORTHO05D000091 9.6e-07 57.4 59 49.2
RcHm_v2.0_Chr5g0014401 Rosa chinensis HOM05D002350 ORTHO05D000091 9.6e-07 57.4 72 40.3
AUR62010902 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.3e-06 57.0 61 44.3
RcHm_v2.0_Chr2g0091681 Rosa chinensis HOM05D002350 ORTHO05D000091 2.8e-06 55.8 43 55.8


User provided reference genes

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