Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030366 Camellia sinensis var. sinensis HOM05D003580 ORTHO05D004441 0.0e+00 1786.5 931 100.0
Actinidia22096 Actinidia chinensis HOM05D003580 ORTHO05D004441 0.0e+00 1430.2 942 79.5
Actinidia30566 Actinidia chinensis HOM05D003580 ORTHO05D004441 0.0e+00 1352.0 936 77.1
vmacro09152 Vaccinium macrocarpon HOM05D003580 ORTHO05D004441 0.0e+00 1339.7 1065 68.4
Rhsim04G0086300 Rhododendron simsii HOM05D003580 ORTHO05D004441 0.0e+00 1331.6 1010 70.9
PGSC0003DMG400002624 Solanum tuberosum HOM05D003580 ORTHO05D004441 0.0e+00 1252.3 949 68.8
Solyc03g120700.3 Solanum lycopersicum HOM05D003580 ORTHO05D004441 0.0e+00 1250.0 949 68.5
Sopen03g039520 Solanum pennellii HOM05D003580 ORTHO05D004441 0.0e+00 1249.2 949 68.4
Lj2A356T45 Lonicera japonica HOM05D003580 ORTHO05D004441 0.0e+00 1236.5 939 69.5
TAR362G0544 Trochodendron aralioides HOM05D003580 ORTHO05D004441 0.0e+00 1216.8 954 67.2
Ciclev10014110m.g Citrus clementina HOM05D003580 ORTHO05D004441 0.0e+00 1212.6 953 68.9
CiPaw.04G180400 Carya illinoinensis HOM05D003580 ORTHO05D004441 0.0e+00 1206.4 947 67.8
QL01p005312 Quercus lobata HOM05D003580 ORTHO05D004441 0.0e+00 1195.3 953 66.2
Cc06_g21420 Coffea canephora HOM05D003580 ORTHO05D004441 0.0e+00 1194.5 953 67.5
Dinv20243 Davidia involucrata HOM05D003580 ORTHO05D004441 0.0e+00 1192.9 949 68.8
TAR633G0565 Trochodendron aralioides HOM05D003580 ORTHO05D004441 0.0e+00 1186.4 948 66.7
Cfa002307 Carpinus fangiana HOM05D003580 ORTHO05D004441 0.0e+00 1184.1 946 67.2
Migut.J00662 Erythranthe guttata HOM05D003580 ORTHO05D004441 0.0e+00 1180.6 955 64.8
Potri.010G177200 Populus trichocarpa HOM05D003580 ORTHO05D004441 0.0e+00 1179.1 949 66.4
Sabra10G0136200 Salix brachista HOM05D003580 ORTHO05D004441 0.0e+00 1177.9 951 66.6
Potri.008G079700 Populus trichocarpa HOM05D003580 ORTHO05D004441 0.0e+00 1171.0 949 65.6
HanXRQChr01g0024861 Helianthus annuus HOM05D003580 ORTHO05D004441 0.0e+00 1167.9 940 65.7
Haze_24513 Corylus avellana HOM05D003580 ORTHO05D004441 0.0e+00 1164.4 993 64.1
TWI53G0960 Tripterygium wilfordii HOM05D003580 ORTHO05D004441 0.0e+00 1158.7 954 65.4
Nn5g28173 Nelumbo nucifera HOM05D003580 ORTHO05D004441 0.0e+00 1155.6 942 65.0
CsaV3_2G009280 Cucumis sativus L. HOM05D003580 ORTHO05D004441 0.0e+00 1155.2 947 64.5
MELO3C008782.2 Cucumis melo HOM05D003580 ORTHO05D004441 0.0e+00 1154.8 947 64.3
MSTRG.19281 Avicennia marina HOM05D003580 ORTHO05D004441 0.0e+00 1154.4 951 63.2
CAN.G438.18 Capsicum annuum HOM05D003580 ORTHO05D004441 0.0e+00 1154.0 888 67.5
Nn1g09424 Nelumbo nucifera HOM05D003580 ORTHO05D004441 0.0e+00 1152.1 941 64.1
ClCG11G011150 Citrullus lanatus HOM05D003580 ORTHO05D004441 0.0e+00 1147.9 944 64.3
Gohir.A05G405500 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1147.1 952 64.7
Oeu011931.1 Olea europaea HOM05D003580 ORTHO05D004441 0.0e+00 1146.7 952 64.7
Gohir.D04G010100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1146.0 951 64.7
Gorai.012G011900 Gossypium raimondii HOM05D003580 ORTHO05D004441 0.0e+00 1145.6 951 64.6
Lsat_1_v5_gn_1_58860 Lactuca sativa HOM05D003580 ORTHO05D004441 0.0e+00 1145.6 949 65.3
GSVIVG01006267001 Vitis vinifera HOM05D003580 ORTHO05D004441 0.0e+00 1141.7 943 66.0
PGR042G2902 Punica granatum HOM05D003580 ORTHO05D004441 0.0e+00 1140.9 949 64.3
Sabra08G0059400 Salix brachista HOM05D003580 ORTHO05D004441 0.0e+00 1140.6 950 64.5
Eucgr.G00871 Eucalyptus grandis HOM05D003580 ORTHO05D004441 0.0e+00 1139.8 955 63.8
Psat6g176280 Pisum sativum HOM05D003580 ORTHO05D004441 0.0e+00 1137.9 950 65.5
arahy.Tifrunner.gnm1.ann1.U0AKQE Arachis hypogaea HOM05D003580 ORTHO05D004441 0.0e+00 1135.6 961 64.0
Lj5g0021899 Lotus japonicus HOM05D003580 ORTHO05D004441 0.0e+00 1135.2 943 65.1
Manes.13G155600 Manihot esculenta HOM05D003580 ORTHO05D004441 0.0e+00 1134.8 959 63.2
arahy.Tifrunner.gnm1.ann1.TPGZ8P Arachis hypogaea HOM05D003580 ORTHO05D004441 0.0e+00 1134.0 961 64.0
COL.COLO4_02821 Corchorus olitorius HOM05D003580 ORTHO05D004441 0.0e+00 1134.0 990 62.5
Gohir.A04G049300 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1132.1 945 64.4
Gorai.009G355000 Gossypium raimondii HOM05D003580 ORTHO05D004441 0.0e+00 1131.7 938 65.1
DCAR_019887 Daucus carota HOM05D003580 ORTHO05D004441 0.0e+00 1130.5 953 63.8
HanXRQChr12g0356901 Helianthus annuus HOM05D003580 ORTHO05D004441 0.0e+00 1126.7 952 63.3
Gohir.D05G331100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1125.5 938 64.8
Peaxi162Scf00076g00824 Petunia axillaris HOM05D003580 ORTHO05D004441 0.0e+00 1125.2 940 64.1
Ca_10488_v3 Cicer arietinum L. HOM05D003580 ORTHO05D004441 0.0e+00 1124.0 950 64.5
THA.LOC104820933 Tarenaya hassleriana HOM05D003580 ORTHO05D004441 0.0e+00 1122.1 961 62.7
Lalb_Chr02g0151301 Lupinus albus HOM05D003580 ORTHO05D004441 0.0e+00 1121.3 948 64.6
Hund21939 Selenicereus undatus HOM05D003580 ORTHO05D004441 0.0e+00 1118.2 949 62.6
Lalb_Chr21g0313231 Lupinus albus HOM05D003580 ORTHO05D004441 0.0e+00 1115.9 944 64.1
Glyma.20G188500 Glycine max HOM05D003580 ORTHO05D004441 0.0e+00 1112.1 942 64.3
Carub.0006s1449 Capsella rubella HOM05D003580 ORTHO05D004441 0.0e+00 1110.9 959 61.3
AUR62000253 Chenopodium quinoa HOM05D003580 ORTHO05D004441 0.0e+00 1108.2 953 63.0
ECA248G2481 Erigeron canadensis HOM05D003580 ORTHO05D004441 0.0e+00 1107.0 946 62.2
Sed0017385 Sechium edule HOM05D003580 ORTHO05D004441 0.0e+00 1106.3 952 62.4
CARHR197010 Cardamine hirsuta HOM05D003580 ORTHO05D004441 0.0e+00 1105.9 961 61.0
Sed0022441 Sechium edule HOM05D003580 ORTHO05D004441 0.0e+00 1103.6 945 61.4
CANSAT64G0454 Cannabis sativa HOM05D003580 ORTHO05D004441 0.0e+00 1103.2 952 62.4
VMungo0720G1645 Vigna mungo HOM05D003580 ORTHO05D004441 0.0e+00 1101.7 943 63.5
Phvul.007G105200 Phaseolus vulgaris HOM05D003580 ORTHO05D004441 0.0e+00 1100.9 937 63.6
Thecc.05G131900 Theobroma cacao HOM05D003580 ORTHO05D004441 0.0e+00 1100.9 953 63.1
EL10Ac4g10045 Beta vulgaris HOM05D003580 ORTHO05D004441 0.0e+00 1100.5 953 63.0
Thhalv10012518m.g Eutrema salsugineum HOM05D003580 ORTHO05D004441 0.0e+00 1100.5 957 60.8
Glyma.10G201900 Glycine max HOM05D003580 ORTHO05D004441 0.0e+00 1099.7 942 63.7
AL6G27200 Arabidopsis lyrata HOM05D003580 ORTHO05D004441 0.0e+00 1098.6 955 60.9
BcaB01g04993 Brassica carinata HOM05D003580 ORTHO05D004441 0.0e+00 1097.0 957 61.0
Sp6g27860 Schrenkiella parvula HOM05D003580 ORTHO05D004441 0.0e+00 1095.5 958 60.2
AT5G16300 Arabidopsis thaliana HOM05D003580 ORTHO05D004441 0.0e+00 1094.0 954 60.8
C09p60740 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1091.3 952 60.4
BolC9t58909H Brassica oleracea HOM05D003580 ORTHO05D004441 0.0e+00 1090.9 952 60.2
A03p07660 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1089.7 949 60.7
A10p22770 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1087.8 952 60.1
Aa31LG11G13320 Aethionema arabicum HOM05D003580 ORTHO05D004441 0.0e+00 1087.0 985 59.7
MBI18_g04901_MAGBIO Magnolia biondii HOM05D003580 ORTHO05D004441 0.0e+00 1087.0 952 61.1
MD08G1237500 Malus domestica HOM05D003580 ORTHO05D004441 0.0e+00 1085.9 918 63.6
BraA10t44342Z Brassica rapa HOM05D003580 ORTHO05D004441 0.0e+00 1085.5 951 60.0
BraA03t10094Z Brassica rapa HOM05D003580 ORTHO05D004441 0.0e+00 1084.3 955 60.2
C03p08900 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1080.5 951 60.6
BolC3t13385H Brassica oleracea HOM05D003580 ORTHO05D004441 0.0e+00 1078.2 951 60.5
Prupe.1G575000 Prunus persica HOM05D003580 ORTHO05D004441 1.3e-311 1073.2 918 63.0
MD15G1429400 Malus domestica HOM05D003580 ORTHO05D004441 1.3e-311 1072.8 931 62.1
Medtr1g492710 Medicago truncatula HOM05D003580 ORTHO05D004441 2.2e-310 1068.9 1094 56.1
Oeu055491.1 Olea europaea HOM05D003580 ORTHO05D004441 7.7e-308 1060.4 889 63.8
Ah.04g159420 Amaranthus hybridus HOM05D003580 ORTHO05D004441 1.7e-307 1059.3 974 59.3
Aqoxy6G00271 Aquilegia oxysepala HOM05D003580 ORTHO05D004441 1.1e-306 1056.6 950 59.9
RcHm_v2.0_Chr7g0220971 Rosa chinensis HOM05D003580 ORTHO05D004441 1.1e-306 1056.6 925 62.1
PSO732G0238 Papaver somniferum HOM05D003580 ORTHO05D004441 3.6e-305 1051.6 948 59.6
PSO675G0774 Papaver somniferum HOM05D003580 ORTHO05D004441 6.7e-304 1047.3 948 59.2
PSO063G3475 Papaver somniferum HOM05D003580 ORTHO05D004441 6.3e-302 1040.8 947 58.6
AUR62006600 Chenopodium quinoa HOM05D003580 ORTHO05D004441 3.1e-301 1038.5 953 60.3
unitig_749.g14304 Utricularia gibba HOM05D003580 ORTHO05D004441 1.9e-298 1029.2 975 56.3
FvH4_5g28760 Fragaria vesca HOM05D003580 ORTHO05D004441 3.6e-297 1025.0 919 60.3
Duzib140G0001 Durio zibethinus HOM05D003580 ORTHO05D004441 6.8e-296 1020.8 953 60.0
FAN08G0025 Fragaria x ananassa HOM05D003580 ORTHO05D004441 1.5e-295 1019.6 924 60.3
FAN18G2191 Fragaria x ananassa HOM05D003580 ORTHO05D004441 3.4e-295 1018.5 920 60.2
Sc16g0010760 Simmondsia chinensis HOM05D003580 ORTHO05D004441 2.2e-294 1015.8 889 62.0
FAN13G3018 Fragaria x ananassa HOM05D003580 ORTHO05D004441 2.4e-293 1012.3 926 59.9
FAN04G1111 Fragaria x ananassa HOM05D003580 ORTHO05D004441 8.5e-291 1003.8 924 59.4
SGA_v2.0_scaffold13G06689 Striga asiatica HOM05D003580 ORTHO05D004441 1.6e-289 999.6 877 61.1
TPR.G2546 Trifolium pratense HOM05D003580 ORTHO05D004441 2.2e-286 989.2 950 59.6
SGA_v2.0_scaffold31G12889 Striga asiatica HOM05D003580 ORTHO05D004441 9.1e-285 983.8 941 58.7
ATR0743G251 Amborella trichopoda HOM05D003580 ORTHO05D004441 9.2e-261 904.0 947 52.7
CDE04G2219 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 9.2e-261 904.0 891 53.4
HPP92_017521 Vanilla planifolia HOM05D003580 ORTHO05D004441 2.6e-247 859.4 970 49.7
Zm00001eb369950 Zea mays HOM05D003580 ORTHO05D004441 1.6e-244 850.1 966 49.9
Nitab4.5_0000001g0420 Nicotiana tabacum HOM05D003580 ORTHO05D004441 2.7e-244 849.4 935 52.7
Os01g0777000 Oryza sativa ssp. japonica HOM05D003580 ORTHO05D004441 3.9e-243 845.5 974 49.3
Zm00001eb151630 Zea mays HOM05D003580 ORTHO05D004441 1.5e-242 843.6 976 49.3
Cpa.g.sc440.1 Carica papaya HOM05D003580 ORTHO05D004441 5.8e-239 831.6 723 62.2
SHI02481 Sapria himalayana HOM05D003580 ORTHO05D004441 3.0e-235 819.3 1010 46.7
SEGI_21118 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.3e-233 813.9 966 47.3
Nitab4.5_0000693g0020 Nicotiana tabacum HOM05D003580 ORTHO05D004441 8.4e-230 801.2 935 50.8
SGA_v2.0_scaffold31G12887 Striga asiatica HOM05D003580 ORTHO05D004441 1.2e-223 780.8 888 51.9
Atru.chr10.106 Acer truncatum HOM05D003580 ORTHO05D004441 1.5e-215 753.8 596 66.4
Atru.chr10.124 Acer truncatum HOM05D003580 ORTHO05D004441 3.0e-211 739.6 583 66.4
Dinv14589 Davidia involucrata HOM05D003580 ORTHO05D004441 5.1e-195 685.6 469 77.6
Dinv14590 Davidia involucrata HOM05D003580 ORTHO05D004441 1.9e-189 667.2 478 73.0
Mapoly0006s0304 Marchantia polymorpha HOM05D003580 ORTHO05D004441 2.8e-185 653.3 1019 39.0
AagrBONN_evm.TU.Sc2ySwM_228.612 Anthoceros agrestis HOM05D003580 ORTHO05D004441 8.8e-171 605.1 1010 37.8
Pp3c21_18130 Physcomitrium patens HOM05D003580 ORTHO05D004441 1.2e-170 604.7 989 38.2
Cfa002308 Carpinus fangiana HOM05D003580 ORTHO05D004441 4.4e-170 602.8 498 66.3
SMO116G0219 Selaginella moellendorffii HOM05D003580 ORTHO05D004441 1.4e-152 544.7 940 37.7
SEGI_09994 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.6e-146 523.9 659 45.5
Atru.chr10.123 Acer truncatum HOM05D003580 ORTHO05D004441 5.8e-122 443.0 353 69.4
Pp3c18_6580 Physcomitrium patens HOM05D003580 ORTHO05D004441 1.1e-109 402.1 730 35.9
Atru.chr10.105 Acer truncatum HOM05D003580 ORTHO05D004441 2.2e-105 387.9 298 72.5
Eucgr.A01176 Eucalyptus grandis HOM05D003580 ORTHO05D004441 1.5e-101 375.2 491 46.0
CDE02G3888 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 8.5e-97 359.4 351 52.1
SEGI_02361 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.2e-80 303.9 290 53.8
CBR_g38826 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-79 301.2 478 39.5
Pp3c22_14630 Physcomitrium patens HOM05D003580 ORTHO05D004441 8.2e-68 263.1 824 27.8
BcaNung02234 Brassica carinata HOM05D003580 ORTHO05D004441 1.6e-66 258.8 215 62.8
SEGI_02603 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.5e-61 242.3 369 39.0
arahy.Tifrunner.gnm1.ann1.0G6L2R Arachis hypogaea HOM05D003580 ORTHO05D004441 4.7e-55 220.7 160 68.8
arahy.Tifrunner.gnm1.ann1.G7UC7Z Arachis hypogaea HOM05D003580 ORTHO05D004441 6.1e-55 220.3 160 69.4
CBR_g38824 Chara braunii HOM05D003580 ORTHO05D000002 1.3e-49 202.6 237 46.0
MCO16G457 Micromonas commoda HOM05D003580 ORTHO05D004441 5.6e-48 197.2 988 22.6
PRCOL_00004619 Prasinoderma coloniale HOM05D003580 ORTHO05D004441 5.6e-48 197.2 968 22.7
SEGI_41100 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.7e-47 194.1 350 36.0
SGA_v2.0_scaffold1489G53965 Striga asiatica HOM05D003580 ORTHO05D004441 3.0e-46 191.4 159 63.5
SEGI_10162 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.1e-43 183.0 291 38.8
TPR.G7717 Trifolium pratense HOM05D003580 ORTHO05D004441 1.2e-42 179.5 126 70.6
SEGI_26119 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.0e-41 174.1 270 37.8
QL01p051634 Quercus lobata HOM05D003580 ORTHO05D004441 1.5e-40 172.6 285 38.2
Cpa.g.sc272.6 Carica papaya HOM05D003580 ORTHO05D004441 6.2e-39 167.2 105 76.2
Actinidia22485 Actinidia chinensis HOM05D003580 ORTHO05D004441 1.4e-38 166.0 186 53.8
FvH4_3g34230 Fragaria vesca HOM05D003580 ORTHO05D004441 5.2e-38 164.1 154 56.5
Cre14.g628050 Chlamydomonas reinhardtii HOM05D003580 ORTHO05D004441 4.1e-35 154.5 1247 21.2
SEGI_40357 Sequoiadendron giganteum HOM05D003580 ORTHO05D000003 3.0e-33 148.3 274 33.9
SEGI_18317 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.1e-31 142.1 300 32.0
SEGI_20620 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 6.2e-31 140.6 168 42.3
SEGI_17593 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.3e-30 138.7 157 44.6
SEGI_21703 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 6.4e-28 130.6 162 42.0
SEGI_10836 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.9e-27 129.0 238 32.4
SEGI_01451 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.4e-27 128.6 152 43.4
SEGI_22494 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.1e-27 127.1 134 46.3
QL01p051624 Quercus lobata HOM05D003580 ORTHO05D004441 3.5e-26 124.8 94 69.1
QL01p051611 Quercus lobata HOM05D003580 ORTHO05D004441 6.0e-26 124.0 65 87.7
SEGI_12986 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.3e-24 117.1 146 41.8
Cpa.g.c39794 Carica papaya HOM05D003580 ORTHO05D004441 2.8e-23 115.2 65 84.6
SEGI_24255 Sequoiadendron giganteum HOM05D000018 ORTHO05D003948 3.1e-22 111.7 123 43.1
BcaB04g17891 Brassica carinata HOM05D003580 ORTHO05D004441 5.2e-22 110.9 65 80.0
SEGI_00259 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.6e-21 108.6 120 44.2
SEGI_23236 Sequoiadendron giganteum HOM05D003580 ORTHO05D000001 2.6e-21 108.6 123 42.3
SEGI_37860 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 6.4e-20 104.0 126 38.9
SEGI_37648 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.9e-19 102.4 122 44.3
SEGI_40013 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.1e-19 100.5 96 49.0
SEGI_07846 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.2e-18 99.8 98 48.0
SEGI_32072 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 6.6e-17 94.0 95 43.2
PSO063G6607 Papaver somniferum HOM05D003580 ORTHO05D004441 1.1e-16 93.2 97 51.5
Actinidia35884 Actinidia chinensis HOM05D000084 ORTHO05D014724 3.4e-13 81.6 81 56.8
SEGI_00546 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.4e-13 81.3 75 48.0
SEGI_13143 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.8e-12 78.2 103 39.8
VMungo1383G0656 Vigna mungo HOM05D003580 ORTHO05D004441 1.9e-11 75.9 49 77.6
SEGI_06299 Sequoiadendron giganteum HOM05D003580 ORTHO05D019257 3.1e-06 58.5 55 52.7


User provided reference genes

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