Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030364 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 2.6e-115 418.7 206 100.0
CSS0015867 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 1.9e-110 402.5 213 95.8
Rhsim06G0136200 Rhododendron simsii HOM05D006668 ORTHO05D008252 2.7e-43 179.5 130 75.4
Actinidia10993 Actinidia chinensis HOM05D006668 ORTHO05D008252 5.9e-43 178.3 130 74.6
vmacro12351 Vaccinium macrocarpon HOM05D006668 ORTHO05D008252 2.7e-40 169.5 131 73.3
Hma1.2p1_0002F.1_g002320 Hydrangea macrophylla HOM05D006668 ORTHO05D008252 2.8e-37 159.5 144 61.8
Hma1.2p1_0002F.1_g002330 Hydrangea macrophylla HOM05D006668 ORTHO05D008252 2.8e-37 159.5 144 61.8
GSVIVG01020613001 Vitis vinifera HOM05D006668 ORTHO05D008252 4.7e-32 142.1 131 62.6
Nn1g06398 Nelumbo nucifera HOM05D006668 ORTHO05D008252 1.0e-31 141.0 130 64.6
QL08p040692 Quercus lobata HOM05D006668 ORTHO05D008252 5.2e-31 138.7 136 61.8
Oeu036086.1 Olea europaea HOM05D006668 ORTHO05D008252 8.9e-31 137.9 130 59.2
TAR627G0647 Trochodendron aralioides HOM05D006668 ORTHO05D008252 8.9e-31 137.9 145 56.6
Thecc.02G187500 Theobroma cacao HOM05D006668 ORTHO05D008252 2.0e-30 136.7 119 63.9
COL.COLO4_07343 Corchorus olitorius HOM05D006668 ORTHO05D008252 4.4e-30 135.6 129 61.2
Prupe.2G094200 Prunus persica HOM05D006668 ORTHO05D008252 4.1e-28 129.0 132 57.6
Duzib132G0616 Durio zibethinus HOM05D006668 ORTHO05D008252 2.7e-27 126.3 129 57.4
Cpa.g.sc165.1 Carica papaya HOM05D006668 ORTHO05D008252 3.8e-26 122.5 134 54.5
CANSAT54G0862 Cannabis sativa HOM05D006668 ORTHO05D008252 6.6e-26 121.7 132 59.8
Gohir.A08G243900 Gossypium hirsutum HOM05D006668 ORTHO05D008252 6.6e-26 121.7 128 57.8
MD15G1126800 Malus domestica HOM05D006668 ORTHO05D008252 6.6e-26 121.7 152 53.3
Gohir.D08G264800 Gossypium hirsutum HOM05D006668 ORTHO05D008252 1.5e-25 120.6 128 57.0
Gorai.004G282700 Gossypium raimondii HOM05D006668 ORTHO05D008252 1.5e-25 120.6 128 57.0
Manes.12G086300 Manihot esculenta HOM05D006668 ORTHO05D008252 2.1e-24 116.7 134 53.7
Aqoxy1G02297 Aquilegia oxysepala HOM05D006668 ORTHO05D008252 2.8e-24 116.3 133 57.1
Cfa014669 Carpinus fangiana HOM05D006668 ORTHO05D008252 6.8e-23 111.7 136 54.4
Ciclev10015198m.g Citrus clementina HOM05D006668 ORTHO05D008252 6.8e-23 111.7 131 52.7
Haze_13261 Corylus avellana HOM05D006668 ORTHO05D008252 6.8e-23 111.7 136 54.4
Nitab4.5_0000621g0040 Nicotiana tabacum HOM05D006668 ORTHO05D008252 2.0e-22 110.2 130 55.4
Cc05_g07800 Coffea canephora HOM05D006668 ORTHO05D008252 3.4e-22 109.4 129 54.3
SalBow7G4646 Salvia bowleyana HOM05D006668 ORTHO05D008252 3.4e-22 109.4 126 52.4
Nitab4.5_0006091g0020 Nicotiana tabacum HOM05D006668 ORTHO05D008252 5.8e-22 108.6 130 53.1
Migut.M00152 Erythranthe guttata HOM05D006668 ORTHO05D008252 9.8e-22 107.8 127 54.3
DCAR_009761 Daucus carota HOM05D006668 ORTHO05D008252 4.9e-21 105.5 146 47.9
Peaxi162Scf00189g00018 Petunia axillaris HOM05D006668 ORTHO05D008252 1.1e-20 104.4 130 51.5
SGA_v2.0_scaffold70G23480 Striga asiatica HOM05D006668 ORTHO05D008252 1.4e-20 104.0 131 51.1
Lalb_Chr03g0029681 Lupinus albus HOM05D006668 ORTHO05D008252 2.4e-20 103.2 139 51.1
Atru.chr6.2861 Acer truncatum HOM05D006668 ORTHO05D008252 3.2e-20 102.8 113 53.1
BolC9t55549H Brassica oleracea HOM05D006668 ORTHO05D008252 3.2e-20 102.8 135 49.6
Carub.0008s0437 Capsella rubella HOM05D006668 ORTHO05D008252 4.1e-20 102.4 135 47.4
Sp2g08980 Schrenkiella parvula HOM05D006668 ORTHO05D008252 7.0e-20 101.7 139 46.8
C09p26530 Brassica napus HOM05D006668 ORTHO05D008252 1.2e-19 100.9 135 48.9
BcaC04g21861 Brassica carinata HOM05D006668 ORTHO05D008252 1.6e-19 100.5 135 49.6
PSO675G8266 Papaver somniferum HOM05D006668 ORTHO05D008252 3.5e-19 99.4 144 45.8
Thhalv10003234m.g Eutrema salsugineum HOM05D006668 ORTHO05D008252 4.6e-19 99.0 138 46.4
THA.LOC104801157 Tarenaya hassleriana HOM05D006668 ORTHO05D008252 4.6e-19 99.0 140 46.4
BcaC04g21859 Brassica carinata HOM05D006668 ORTHO05D008252 6.0e-19 98.6 129 50.4
Lsat_1_v5_gn_8_69500 Lactuca sativa HOM05D006668 ORTHO05D008252 1.0e-18 97.8 149 48.3
AL8G15870 Arabidopsis lyrata HOM05D006668 ORTHO05D008252 1.3e-18 97.4 135 48.1
PGR142G0029 Punica granatum HOM05D006668 ORTHO05D008252 2.3e-18 96.7 131 46.6
Duzib248G1400 Durio zibethinus HOM05D006668 ORTHO05D008252 3.9e-18 95.9 87 62.1
PSO541G3384 Papaver somniferum HOM05D006668 ORTHO05D008252 3.9e-18 95.9 150 47.3
A09p20930 Brassica napus HOM05D006668 ORTHO05D008252 1.1e-17 94.4 135 47.4
BraA09t37693Z Brassica rapa HOM05D006668 ORTHO05D008252 1.1e-17 94.4 135 47.4
CiPaw.03G182600 Carya illinoinensis HOM05D006668 ORTHO05D008252 1.5e-17 94.0 136 47.1
AT5G44150 Arabidopsis thaliana HOM05D006668 ORTHO05D008252 1.9e-17 93.6 134 45.5
Glyma.12G119000 Glycine max HOM05D006668 ORTHO05D008252 3.3e-17 92.8 140 49.3
FvH4_5g30510 Fragaria vesca HOM05D006668 ORTHO05D008252 7.3e-17 91.7 119 51.3
FAN08G3049 Fragaria x ananassa HOM05D006668 ORTHO05D008252 7.3e-17 91.7 119 51.3
Sopen07g027510 Solanum pennellii HOM05D006668 ORTHO05D008252 7.3e-17 91.7 132 49.2
BcaC06g31649 Brassica carinata HOM05D006668 ORTHO05D008252 1.2e-16 90.9 136 47.8
HanXRQChr17g0555041 Helianthus annuus HOM05D006668 ORTHO05D008252 1.2e-16 90.9 144 46.5
PGSC0003DMG400009383 Solanum tuberosum HOM05D006668 ORTHO05D008252 1.2e-16 90.9 132 49.2
FAN18G2410 Fragaria x ananassa HOM05D006668 ORTHO05D008252 1.6e-16 90.5 119 50.4
Solyc07g053560.3 Solanum lycopersicum HOM05D006668 ORTHO05D008252 1.6e-16 90.5 132 48.5
FAN13G2061 Fragaria x ananassa HOM05D006668 ORTHO05D008252 3.6e-16 89.4 119 50.4
RcHm_v2.0_Chr7g0225261 Rosa chinensis HOM05D006668 ORTHO05D008252 6.2e-16 88.6 129 46.5
CARHR179120 Cardamine hirsuta HOM05D006668 ORTHO05D008252 1.1e-15 87.8 138 50.7
CAN.G1808.7 Capsicum annuum HOM05D006668 ORTHO05D008252 1.8e-15 87.0 128 48.4
Lj3g0004052 Lotus japonicus HOM05D006668 ORTHO05D008252 2.3e-15 86.7 136 46.3
TWI59G1373 Tripterygium wilfordii HOM05D006668 ORTHO05D008252 3.1e-15 86.3 129 47.3
Aa31LG5G3090 Aethionema arabicum HOM05D006668 ORTHO05D008252 5.2e-15 85.5 144 44.4
MSTRG.5024 Avicennia marina HOM05D006668 ORTHO05D008252 5.2e-15 85.5 118 47.5
Glyma.06G287100 Glycine max HOM05D006668 ORTHO05D008252 8.9e-15 84.7 143 46.9
SGA_v2.0_scaffold58G20553 Striga asiatica HOM05D006668 ORTHO05D008252 8.9e-15 84.7 120 47.5
Phvul.010G089800 Phaseolus vulgaris HOM05D006668 ORTHO05D008252 2.6e-14 83.2 134 44.8
TPR.G14253 Trifolium pratense HOM05D006668 ORTHO05D008252 4.4e-14 82.4 134 43.3
ClCG03G006150 Citrullus lanatus HOM05D006668 ORTHO05D008252 2.2e-13 80.1 142 43.0
Ca_18916_v3 Cicer arietinum L. HOM05D006668 ORTHO05D008252 3.7e-13 79.3 131 45.0
Sed0009608 Sechium edule HOM05D006668 ORTHO05D008252 3.7e-13 79.3 133 45.1
VMungo0037G0001 Vigna mungo HOM05D006668 ORTHO05D008252 3.7e-13 79.3 135 45.2
ClCG00G003780 Citrullus lanatus HOM05D006668 ORTHO05D008252 4.9e-13 79.0 132 44.7
ClCG02G002300 Citrullus lanatus HOM05D006668 ORTHO05D008252 4.9e-13 79.0 132 44.7
CDE10G0622 Ceratophyllum demersum HOM05D006668 ORTHO05D008252 1.1e-12 77.8 129 44.2
Medtr4g079100 Medicago truncatula HOM05D006668 ORTHO05D008252 1.1e-12 77.8 130 43.8
Psat7g136840 Pisum sativum HOM05D006668 ORTHO05D008252 1.1e-12 77.8 134 41.0
arahy.Tifrunner.gnm1.ann1.Y4MWM5 Arachis hypogaea HOM05D006668 ORTHO05D008252 2.4e-12 76.6 145 37.9
MBI06_g42697_MAGBIO Magnolia biondii HOM05D006668 ORTHO05D008252 2.4e-12 76.6 133 42.1
Oeu016899.1 Olea europaea HOM05D006668 ORTHO05D008252 6.0e-11 72.0 73 56.2
MELO3C018863.2 Cucumis melo HOM05D006668 ORTHO05D008252 1.3e-10 70.9 131 41.2
BcaB07g30967 Brassica carinata HOM05D006668 ORTHO05D008252 1.7e-10 70.5 171 37.4
Potri.017G017200 Populus trichocarpa HOM05D006668 ORTHO05D008252 3.9e-10 69.3 145 40.0
ECA232G0319 Erigeron canadensis HOM05D006668 ORTHO05D008252 8.6e-10 68.2 204 33.3
Hund01006 Selenicereus undatus HOM05D006668 ORTHO05D008252 1.5e-09 67.4 147 35.4
ATR0602G285 Amborella trichopoda HOM05D006668 ORTHO05D008252 4.3e-09 65.9 118 39.8
HPP92_023281 Vanilla planifolia HOM05D006668 ORTHO05D008252 1.2e-08 64.3 115 40.0
CsaV3_7G003140 Cucumis sativus L. HOM05D006668 ORTHO05D008252 2.8e-08 63.2 142 37.3


User provided reference genes

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