Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030359 Camellia sinensis var. sinensis HOM05D000158 ORTHO05D000197 1.6e-58 229.2 110 100.0
CSS0023614 Camellia sinensis var. sinensis HOM05D000158 ORTHO05D000197 1.6e-42 176.0 90 92.2
CSS0006965 Camellia sinensis var. sinensis HOM05D000158 ORTHO05D000197 1.5e-40 169.5 90 91.1
CSS0041096 Camellia sinensis var. sinensis HOM05D000158 ORTHO05D000197 1.9e-40 169.1 95 85.3
CSS0038098 Camellia sinensis var. sinensis HOM05D000158 ORTHO05D000197 3.1e-38 161.8 90 86.7
CSS0023995 Camellia sinensis var. sinensis HOM05D000158 ORTHO05D000197 4.0e-38 161.4 92 82.6
CSS0004849 Camellia sinensis var. sinensis HOM05D000158 ORTHO05D000197 2.6e-37 158.7 90 85.6
TPR.G27198 Trifolium pratense HOM05D000158 ORTHO05D000197 1.4e-11 73.2 92 45.7
TPR.G7439 Trifolium pratense HOM05D000158 ORTHO05D000197 9.3e-11 70.5 90 42.2
Manes.05G131901 Manihot esculenta HOM05D000158 ORTHO05D000197 1.2e-10 70.1 94 37.2
Manes.S095214 Manihot esculenta HOM05D000158 ORTHO05D000197 1.6e-10 69.7 98 37.8
TPR.G34405 Trifolium pratense HOM05D000158 ORTHO05D000197 2.1e-10 69.3 90 41.1
PGSC0003DMG400039612 Solanum tuberosum HOM05D016461 ORTHO05D017121 2.7e-10 68.9 89 40.4
TPR.G39902 Trifolium pratense HOM05D000158 ORTHO05D000197 4.6e-10 68.2 89 44.9
TPR.G16515 Trifolium pratense HOM05D000158 ORTHO05D000197 6.0e-10 67.8 79 41.8
HanXRQChr02g0042331 Helianthus annuus HOM05D000158 ORTHO05D000197 1.0e-09 67.0 81 43.2
HanXRQChr02g0042351 Helianthus annuus HOM05D000158 ORTHO05D000197 1.0e-09 67.0 81 43.2
TPR.G40697 Trifolium pratense HOM05D000158 ORTHO05D000197 1.0e-09 67.0 98 37.8
PGSC0003DMG400013070 Solanum tuberosum HOM05D000158 ORTHO05D017121 1.3e-09 66.6 73 45.2
Manes.16G057426 Manihot esculenta HOM05D000158 ORTHO05D000197 1.7e-09 66.2 82 37.8
TPR.G33065 Trifolium pratense HOM05D000158 ORTHO05D000197 2.3e-09 65.9 102 39.2
PGSC0003DMG400045519 Solanum tuberosum HOM05D000158 ORTHO05D000197 6.6e-09 64.3 78 44.9
Manes.17G018812 Manihot esculenta HOM05D000158 ORTHO05D000197 8.7e-09 63.9 55 45.5
Manes.06G001751 Manihot esculenta HOM05D000158 ORTHO05D000197 1.5e-08 63.2 103 32.0
Manes.10G055732 Manihot esculenta HOM05D000158 ORTHO05D000197 1.5e-08 63.2 55 45.5
Migut.O00084 Erythranthe guttata HOM05D000158 ORTHO05D000197 2.5e-08 62.4 82 39.0
Migut.O00085 Erythranthe guttata HOM05D000158 ORTHO05D000197 2.5e-08 62.4 82 39.0
Migut.O00086 Erythranthe guttata HOM05D000158 ORTHO05D000197 2.5e-08 62.4 82 39.0
arahy.Tifrunner.gnm1.ann1.XN6NS8 Arachis hypogaea HOM05D000158 ORTHO05D000197 3.3e-08 62.0 73 39.7
Migut.H01165 Erythranthe guttata HOM05D000158 ORTHO05D000197 3.3e-08 62.0 89 34.8
Migut.O00081 Erythranthe guttata HOM05D000158 ORTHO05D000197 3.3e-08 62.0 88 37.5
arahy.Tifrunner.gnm1.ann1.8UCL89 Arachis hypogaea HOM05D000158 ORTHO05D000197 4.3e-08 61.6 84 36.9
arahy.Tifrunner.gnm1.ann1.CIR6XW Arachis hypogaea HOM05D000158 ORTHO05D003614 5.6e-08 61.2 87 36.8
Manes.07G056008 Manihot esculenta HOM05D000158 ORTHO05D000197 5.6e-08 61.2 90 35.6
Manes.10G080301 Manihot esculenta HOM05D000158 ORTHO05D000197 5.6e-08 61.2 85 36.5
Gorai.011G157800 Gossypium raimondii HOM05D000158 ORTHO05D000197 7.3e-08 60.8 93 38.7
Sopen04g014260 Solanum pennellii HOM05D000158 ORTHO05D003926 7.3e-08 60.8 68 44.1
arahy.Tifrunner.gnm1.ann1.BYBE5B Arachis hypogaea HOM05D000158 ORTHO05D000197 9.6e-08 60.5 84 35.7
arahy.Tifrunner.gnm1.ann1.M97NZA Arachis hypogaea HOM05D000158 ORTHO05D000197 1.3e-07 60.1 84 35.7
arahy.Tifrunner.gnm1.ann1.X0U8Y0 Arachis hypogaea HOM05D000158 ORTHO05D000197 1.3e-07 60.1 84 36.9
Gorai.N000300 Gossypium raimondii HOM05D000158 ORTHO05D000197 1.3e-07 60.1 93 39.8
Manes.17G002683 Manihot esculenta HOM05D000158 ORTHO05D000197 1.6e-07 59.7 104 28.8
arahy.Tifrunner.gnm1.ann1.6U09DB Arachis hypogaea HOM05D000158 ORTHO05D000197 2.1e-07 59.3 92 34.8
arahy.Tifrunner.gnm1.ann1.7I5EIZ Arachis hypogaea HOM05D000158 ORTHO05D000197 2.1e-07 59.3 92 34.8
arahy.Tifrunner.gnm1.ann1.BL2XE1 Arachis hypogaea HOM05D000158 ORTHO05D000197 2.1e-07 59.3 84 35.7
arahy.Tifrunner.gnm1.ann1.FHI9NT Arachis hypogaea HOM05D000158 ORTHO05D000197 2.1e-07 59.3 92 34.8
arahy.Tifrunner.gnm1.ann1.I3V9I7 Arachis hypogaea HOM05D000158 ORTHO05D000197 2.1e-07 59.3 84 35.7
arahy.Tifrunner.gnm1.ann1.JCQ008 Arachis hypogaea HOM05D000158 ORTHO05D000197 2.1e-07 59.3 92 34.8
arahy.Tifrunner.gnm1.ann1.N3555V Arachis hypogaea HOM05D000158 ORTHO05D000197 2.1e-07 59.3 92 34.8
arahy.Tifrunner.gnm1.ann1.ZIM2T0 Arachis hypogaea HOM05D000158 ORTHO05D000197 2.1e-07 59.3 103 32.0
Manes.07G055686 Manihot esculenta HOM05D000158 ORTHO05D000197 2.1e-07 59.3 96 31.2
arahy.Tifrunner.gnm1.ann1.18PYUZ Arachis hypogaea HOM05D000158 ORTHO05D000197 2.8e-07 58.9 84 35.7
arahy.Tifrunner.gnm1.ann1.39JP8F Arachis hypogaea HOM05D000158 ORTHO05D000197 2.8e-07 58.9 84 35.7
arahy.Tifrunner.gnm1.ann1.4EM99Z Arachis hypogaea HOM05D000158 ORTHO05D000197 2.8e-07 58.9 84 35.7
arahy.Tifrunner.gnm1.ann1.8102HM Arachis hypogaea HOM05D000158 ORTHO05D000197 2.8e-07 58.9 84 35.7
arahy.Tifrunner.gnm1.ann1.82YQT6 Arachis hypogaea HOM05D000158 ORTHO05D000197 2.8e-07 58.9 84 35.7
arahy.Tifrunner.gnm1.ann1.9F14AA Arachis hypogaea HOM05D000158 ORTHO05D000197 2.8e-07 58.9 84 35.7
arahy.Tifrunner.gnm1.ann1.HTN0Y5 Arachis hypogaea HOM05D000158 ORTHO05D000197 2.8e-07 58.9 84 35.7
arahy.Tifrunner.gnm1.ann1.I3DMP8 Arachis hypogaea HOM05D000158 ORTHO05D003614 2.8e-07 58.9 84 35.7
arahy.Tifrunner.gnm1.ann1.N6DBBJ Arachis hypogaea HOM05D000158 ORTHO05D000197 2.8e-07 58.9 84 35.7
arahy.Tifrunner.gnm1.ann1.Q72NH6 Arachis hypogaea HOM05D000158 ORTHO05D000197 2.8e-07 58.9 84 35.7
arahy.Tifrunner.gnm1.ann1.QGF57N Arachis hypogaea HOM05D000158 ORTHO05D000197 2.8e-07 58.9 84 35.7
arahy.Tifrunner.gnm1.ann1.S1Q5XH Arachis hypogaea HOM05D000158 ORTHO05D000197 2.8e-07 58.9 84 35.7
arahy.Tifrunner.gnm1.ann1.V0BAMU Arachis hypogaea HOM05D000158 ORTHO05D000197 2.8e-07 58.9 92 33.7
arahy.Tifrunner.gnm1.ann1.W04P42 Arachis hypogaea HOM05D000158 ORTHO05D000197 2.8e-07 58.9 84 35.7
arahy.Tifrunner.gnm1.ann1.558G8J Arachis hypogaea HOM05D000158 ORTHO05D000197 3.6e-07 58.5 87 35.6
arahy.Tifrunner.gnm1.ann1.96HYEI Arachis hypogaea HOM05D000158 ORTHO05D000197 3.6e-07 58.5 84 35.7
arahy.Tifrunner.gnm1.ann1.WI178G Arachis hypogaea HOM05D000158 ORTHO05D000197 3.6e-07 58.5 95 29.5
arahy.Tifrunner.gnm1.ann1.X7VQJY Arachis hypogaea HOM05D000158 ORTHO05D002858 3.6e-07 58.5 84 34.5
arahy.Tifrunner.gnm1.ann1.A5BTLM Arachis hypogaea HOM05D000158 ORTHO05D000197 4.8e-07 58.2 72 36.1
arahy.Tifrunner.gnm1.ann1.N7R8CX Arachis hypogaea HOM05D000158 ORTHO05D000197 4.8e-07 58.2 84 34.5
Oeu042197.1 Olea europaea HOM05D000158 ORTHO05D000197 4.8e-07 58.2 83 33.7
PGSC0003DMG400036915 Solanum tuberosum HOM05D000158 ORTHO05D000197 4.8e-07 58.2 78 41.0
arahy.Tifrunner.gnm1.ann1.MH5L6C Arachis hypogaea HOM05D000158 ORTHO05D000197 6.2e-07 57.8 84 35.7
arahy.Tifrunner.gnm1.ann1.PC7CW8 Arachis hypogaea HOM05D000158 ORTHO05D000197 6.2e-07 57.8 84 35.7
arahy.Tifrunner.gnm1.ann1.W4MS58 Arachis hypogaea HOM05D000158 ORTHO05D000197 6.2e-07 57.8 84 34.5
Gorai.003G148400 Gossypium raimondii HOM05D000158 ORTHO05D000197 6.2e-07 57.8 80 42.5
Gorai.004G224200 Gossypium raimondii HOM05D000158 ORTHO05D000197 6.2e-07 57.8 50 52.0
Sopen03g018570 Solanum pennellii HOM05D000158 ORTHO05D000197 6.2e-07 57.8 102 37.3
PGSC0003DMG400042767 Solanum tuberosum HOM05D000158 ORTHO05D000197 6.2e-07 57.8 94 34.0
arahy.Tifrunner.gnm1.ann1.CX12M5 Arachis hypogaea HOM05D000158 ORTHO05D000197 8.1e-07 57.4 73 38.4
arahy.Tifrunner.gnm1.ann1.DQ3ZQE Arachis hypogaea HOM05D000158 ORTHO05D000197 8.1e-07 57.4 80 37.5
arahy.Tifrunner.gnm1.ann1.RSIS5G Arachis hypogaea HOM05D000158 ORTHO05D000197 8.1e-07 57.4 80 37.5
arahy.Tifrunner.gnm1.ann1.S2VNR2 Arachis hypogaea HOM05D000158 ORTHO05D000197 8.1e-07 57.4 80 37.5
Manes.11G096250 Manihot esculenta HOM05D000158 ORTHO05D000197 8.1e-07 57.4 50 46.0
PGSC0003DMG400022758 Solanum tuberosum HOM05D000158 ORTHO05D010408 8.1e-07 57.4 55 45.5
arahy.Tifrunner.gnm1.ann1.4E97LE Arachis hypogaea HOM05D000158 ORTHO05D000197 1.1e-06 57.0 54 42.6
arahy.Tifrunner.gnm1.ann1.BYKP53 Arachis hypogaea HOM05D000158 ORTHO05D000197 1.1e-06 57.0 84 35.7
arahy.Tifrunner.gnm1.ann1.J01ZYU Arachis hypogaea HOM05D000158 ORTHO05D000197 1.1e-06 57.0 54 42.6
arahy.Tifrunner.gnm1.ann1.JP535L Arachis hypogaea HOM05D000158 ORTHO05D000197 1.1e-06 57.0 84 34.5
Gorai.002G201500 Gossypium raimondii HOM05D000158 ORTHO05D000197 1.1e-06 57.0 50 50.0
Oeu007102.1 Olea europaea HOM05D000158 ORTHO05D010634 1.1e-06 57.0 63 39.7
Atru.chr13.2613 Acer truncatum HOM05D000158 ORTHO05D000197 1.4e-06 56.6 79 36.7
arahy.Tifrunner.gnm1.ann1.GCX1C5 Arachis hypogaea HOM05D000158 ORTHO05D000197 1.4e-06 56.6 54 42.6
arahy.Tifrunner.gnm1.ann1.P57W7I Arachis hypogaea HOM05D000158 ORTHO05D000197 1.4e-06 56.6 84 33.3
arahy.Tifrunner.gnm1.ann1.QJW6VR Arachis hypogaea HOM05D000158 ORTHO05D000197 1.4e-06 56.6 54 42.6
arahy.Tifrunner.gnm1.ann1.UC4KU4 Arachis hypogaea HOM05D000158 ORTHO05D000197 1.4e-06 56.6 90 31.1
MSTRG.14068 Avicennia marina HOM05D000158 ORTHO05D000197 1.4e-06 56.6 88 38.6
MSTRG.8973 Avicennia marina HOM05D000158 ORTHO05D000197 1.4e-06 56.6 88 38.6
Manes.09G089621 Manihot esculenta HOM05D000158 ORTHO05D000002 1.4e-06 56.6 76 43.4
Atru.chr12.2446 Acer truncatum HOM05D000158 ORTHO05D002858 1.8e-06 56.2 110 32.7
arahy.Tifrunner.gnm1.ann1.756TEX Arachis hypogaea HOM05D000158 ORTHO05D000197 1.8e-06 56.2 92 34.8
arahy.Tifrunner.gnm1.ann1.9Y4FQ2 Arachis hypogaea HOM05D000158 ORTHO05D000197 1.8e-06 56.2 92 34.8
TWI56G0231 Tripterygium wilfordii HOM05D000158 ORTHO05D000197 1.8e-06 56.2 75 38.7
arahy.Tifrunner.gnm1.ann1.9QV7LN Arachis hypogaea HOM05D000158 ORTHO05D000197 2.4e-06 55.8 84 33.3
arahy.Tifrunner.gnm1.ann1.IW28EF Arachis hypogaea HOM05D000158 ORTHO05D000197 2.4e-06 55.8 54 42.6
arahy.Tifrunner.gnm1.ann1.IZ73GG Arachis hypogaea HOM05D000158 ORTHO05D000197 2.4e-06 55.8 73 37.0
arahy.Tifrunner.gnm1.ann1.SEYZ0I Arachis hypogaea HOM05D000158 ORTHO05D000197 2.4e-06 55.8 84 34.5
arahy.Tifrunner.gnm1.ann1.T0AVIE Arachis hypogaea HOM05D000158 ORTHO05D000197 2.4e-06 55.8 74 32.4
arahy.Tifrunner.gnm1.ann1.WK8KCR Arachis hypogaea HOM05D000158 ORTHO05D000197 2.4e-06 55.8 80 35.0
Gorai.004G105400 Gossypium raimondii HOM05D000158 ORTHO05D000197 2.4e-06 55.8 84 40.5
Gorai.005G169400 Gossypium raimondii HOM05D000158 ORTHO05D000197 2.4e-06 55.8 82 39.0
Gorai.010G157800 Gossypium raimondii HOM05D000158 ORTHO05D000197 2.4e-06 55.8 50 52.0
arahy.Tifrunner.gnm1.ann1.1P3WRE Arachis hypogaea HOM05D000158 ORTHO05D000197 3.1e-06 55.5 84 32.1
PGSC0003DMG400045496 Solanum tuberosum HOM05D010819 ORTHO05D010408 3.1e-06 55.5 72 38.9
Atru.chr4.268 Acer truncatum HOM05D000158 ORTHO05D000197 4.0e-06 55.1 53 43.4
arahy.Tifrunner.gnm1.ann1.I7E4L8 Arachis hypogaea HOM05D000158 ORTHO05D000197 4.0e-06 55.1 84 34.5
arahy.Tifrunner.gnm1.ann1.M3KMZQ Arachis hypogaea HOM05D000158 ORTHO05D000197 4.0e-06 55.1 72 34.7
Manes.02G210201 Manihot esculenta HOM05D000158 ORTHO05D000197 4.0e-06 55.1 88 33.0
Oeu039579.1 Olea europaea HOM05D000158 ORTHO05D000197 4.0e-06 55.1 63 39.7
arahy.Tifrunner.gnm1.ann1.C39H2M Arachis hypogaea HOM05D000158 ORTHO05D000197 5.3e-06 54.7 84 34.5
Oeu006234.1 Olea europaea HOM05D000158 ORTHO05D000197 5.3e-06 54.7 63 38.1
Oeu060640.1 Olea europaea HOM05D000158 ORTHO05D000197 5.3e-06 54.7 66 36.4
Oeu061534.1 Olea europaea HOM05D000158 ORTHO05D000197 5.3e-06 54.7 66 36.4
PGSC0003DMG400040799 Solanum tuberosum HOM05D000158 ORTHO05D010408 5.3e-06 54.7 50 48.0
Atru.chr4.265 Acer truncatum HOM05D000158 ORTHO05D000197 6.9e-06 54.3 53 43.4
arahy.Tifrunner.gnm1.ann1.7FSK73 Arachis hypogaea HOM05D000158 ORTHO05D000197 6.9e-06 54.3 56 39.3
arahy.Tifrunner.gnm1.ann1.HEVL9E Arachis hypogaea HOM05D000158 ORTHO05D000197 6.9e-06 54.3 54 40.7
arahy.Tifrunner.gnm1.ann1.QG9Y2W Arachis hypogaea HOM05D000158 ORTHO05D000197 6.9e-06 54.3 90 28.9
Gorai.003G060500 Gossypium raimondii HOM05D000158 ORTHO05D000197 6.9e-06 54.3 89 34.8
Oeu028306.1 Olea europaea HOM05D000158 ORTHO05D000197 6.9e-06 54.3 67 35.8
Sopen12g001100 Solanum pennellii HOM05D000158 ORTHO05D000197 6.9e-06 54.3 53 45.3
Atru.chr4.934 Acer truncatum HOM05D000158 ORTHO05D000197 9.0e-06 53.9 53 43.4
arahy.Tifrunner.gnm1.ann1.0VPI4Y Arachis hypogaea HOM05D000158 ORTHO05D000197 9.0e-06 53.9 99 31.3
arahy.Tifrunner.gnm1.ann1.BYA8HJ Arachis hypogaea HOM05D000158 ORTHO05D000197 9.0e-06 53.9 54 40.7
arahy.Tifrunner.gnm1.ann1.GD7WFM Arachis hypogaea HOM05D000158 ORTHO05D000197 9.0e-06 53.9 84 33.3
arahy.Tifrunner.gnm1.ann1.KY4VPW Arachis hypogaea HOM05D000158 ORTHO05D000197 9.0e-06 53.9 87 33.3
arahy.Tifrunner.gnm1.ann1.X91M1R Arachis hypogaea HOM05D000158 ORTHO05D000197 9.0e-06 53.9 84 32.1
arahy.Tifrunner.gnm1.ann1.XLQ2LK Arachis hypogaea HOM05D000158 ORTHO05D000197 9.0e-06 53.9 92 33.7
arahy.Tifrunner.gnm1.ann1.ZZQG32 Arachis hypogaea HOM05D000158 ORTHO05D000197 9.0e-06 53.9 82 31.7
CiPaw.03G092700 Carya illinoinensis HOM05D000158 ORTHO05D002858 9.0e-06 53.9 73 38.4
Thhalv10022480m.g Eutrema salsugineum HOM05D000158 ORTHO05D000197 9.0e-06 53.9 55 43.6
Thhalv10023798m.g Eutrema salsugineum HOM05D000158 ORTHO05D000197 9.0e-06 53.9 55 43.6
Manes.09G074619 Manihot esculenta HOM05D000158 ORTHO05D000197 9.0e-06 53.9 74 32.4
Manes.10G066150 Manihot esculenta HOM05D000158 ORTHO05D000197 9.0e-06 53.9 80 38.8
Oeu020826.1 Olea europaea HOM05D000158 ORTHO05D000197 9.0e-06 53.9 66 36.4
Sopen09g015630 Solanum pennellii HOM05D000158 ORTHO05D002858 9.0e-06 53.9 82 37.8


User provided reference genes

Program Settings