Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.9e-274 948.0 487 100.0
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.5e-246 855.9 442 99.3
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 7.3e-225 783.9 428 94.6
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 4.7e-224 781.2 428 94.4
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 3.0e-109 399.8 378 60.1
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 3.9e-109 399.4 445 53.5
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 6.0e-102 375.6 436 53.4
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 4.6e-94 349.4 435 49.4
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 4.6e-94 349.4 564 43.1
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 7.3e-76 288.9 436 43.3
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 3.8e-64 250.0 449 39.2
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 8.4e-64 248.8 427 40.3
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 1.1e-63 248.4 433 39.3
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 1.4e-63 248.1 428 42.3
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 1.4e-63 248.1 441 39.0
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 2.4e-63 247.3 423 40.7
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 3.5e-62 243.4 433 40.6
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 4.6e-62 243.0 433 38.6
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 1.0e-61 241.9 428 40.9
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 2.5e-60 237.3 425 38.4
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 1.6e-59 234.6 436 37.2
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.2e-57 228.4 429 38.9
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 1.2e-57 228.4 429 38.9
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 1.2e-57 228.4 431 37.4
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 3.4e-57 226.9 397 40.1
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 4.9e-56 223.0 431 37.8
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 1.9e-55 221.1 431 37.8
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 1.9e-55 221.1 436 37.8
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 9.3e-55 218.8 438 36.5
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 1.0e-53 215.3 426 36.9
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 5.7e-52 209.5 435 36.6
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 5.7e-52 209.5 421 37.8
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 5.7e-52 209.5 365 40.0
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 7.4e-52 209.1 311 41.5
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 1.6e-51 208.0 427 36.3
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 2.8e-51 207.2 424 38.2
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 3.1e-50 203.8 472 38.1
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 4.1e-50 203.4 412 37.4
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 3.4e-49 200.3 432 37.5
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 4.5e-49 199.9 431 35.0
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 5.5e-47 193.0 315 39.0
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 7.2e-47 192.6 432 36.6
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 3.6e-46 190.3 431 33.2
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 3.6e-46 190.3 416 35.6
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 7.9e-46 189.1 432 34.0
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 1.0e-45 188.7 405 34.3
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 1.3e-45 188.3 428 37.4
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 1.8e-45 188.0 397 35.0
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.9e-44 184.5 431 33.2
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.9e-44 184.5 431 33.2
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 4.3e-44 183.3 416 34.9
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 1.7e-43 181.4 438 32.9
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 2.2e-43 181.0 448 34.4
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.8e-43 180.6 431 32.7
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 5.3e-42 176.4 398 35.4
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 2.0e-41 174.5 406 33.5
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 7.7e-41 172.6 412 35.2
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 2.2e-40 171.0 430 31.4
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 3.8e-40 170.2 431 33.4
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 5.0e-40 169.9 412 35.2
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 1.1e-39 168.7 426 34.0
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 1.1e-39 168.7 409 34.5
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 4.2e-39 166.8 401 34.9
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 1.2e-38 165.2 339 35.4
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 1.2e-38 165.2 408 33.3
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 1.6e-38 164.9 409 32.8
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 2.1e-38 164.5 409 33.7
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 4.7e-38 163.3 441 31.5
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 1.4e-37 161.8 441 33.8
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 2.3e-37 161.0 432 33.1
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 8.8e-37 159.1 425 33.4
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 8.8e-37 159.1 433 31.6
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 2.6e-36 157.5 414 32.1
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 3.3e-36 157.1 433 30.9
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 1.3e-35 155.2 401 34.9
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 2.2e-35 154.5 401 32.4
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 1.1e-34 152.1 424 31.8
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 1.1e-34 152.1 429 31.5
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 1.1e-34 152.1 453 32.2
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 1.4e-34 151.8 445 32.4
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 2.4e-34 151.0 399 35.6
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 5.3e-34 149.8 412 34.2
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 2.6e-33 147.5 429 30.5
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 1.3e-32 145.2 430 30.9
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 2.2e-32 144.4 457 31.7
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 3.8e-32 143.7 460 30.9
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 6.5e-32 142.9 432 31.0
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 1.9e-31 141.4 465 29.2
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 4.2e-31 140.2 436 32.8
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 9.4e-31 139.0 404 32.4
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 1.6e-30 138.3 399 32.6
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 3.6e-30 137.1 303 36.6
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 1.4e-29 135.2 423 30.7
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 3.9e-29 133.7 298 35.2
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 2.6e-28 131.0 405 31.1
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 7.4e-28 129.4 386 29.0
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 7.4e-28 129.4 344 31.1
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 9.7e-28 129.0 461 29.1
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 1.7e-27 128.3 314 32.8
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 6.3e-27 126.3 348 31.6
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 8.2e-27 125.9 389 29.6
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 7.7e-25 119.4 279 31.2
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 6.5e-24 116.3 453 26.3
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 2.5e-23 114.4 391 29.2
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 3.0e-21 107.5 425 27.8
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.5e-20 105.1 389 27.8
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 1.5e-20 105.1 420 27.9
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 3.7e-19 100.5 200 36.5
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 5.3e-18 96.7 349 29.8
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 7.0e-18 96.3 97 58.8
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 5.9e-17 93.2 440 24.8
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 9.4e-15 85.9 385 23.9
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 6.1e-14 83.2 80 50.0
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 1.3e-11 75.5 85 49.4
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.3e-08 65.5 45 73.3
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 8.6e-08 62.8 77 41.6
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 5.5e-07 60.1 46 58.7
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 1.2e-06 58.9 155 31.0
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 2.8e-06 57.8 436 24.5


User provided reference genes

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