Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030291 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 3.9e-179 631.3 315 100.0
Dinv38641 Davidia involucrata HOM05D003025 ORTHO05D003305 3.2e-56 223.0 391 41.2
GSVIVG01008155001 Vitis vinifera HOM05D003025 ORTHO05D003305 1.1e-40 171.4 326 37.7
TAR374G0527 Trochodendron aralioides HOM05D003025 ORTHO05D003305 5.5e-32 142.5 328 35.1
TAR622G0187 Trochodendron aralioides HOM05D003025 ORTHO05D003305 1.1e-29 134.8 405 28.9
Nn4g23540 Nelumbo nucifera HOM05D003025 ORTHO05D003305 3.3e-21 106.7 314 31.5
QL10p020762 Quercus lobata HOM05D011573 ORTHO05D003305 9.1e-19 98.6 339 31.0
Potri.015G048400 Populus trichocarpa HOM05D003025 ORTHO05D003305 1.6e-18 97.8 343 31.2
Dinv15582 Davidia involucrata HOM05D003025 ORTHO05D003305 6.5e-17 92.4 411 26.8
Prupe.5G210100 Prunus persica HOM05D003025 ORTHO05D003305 1.5e-16 91.3 248 34.7
Actinidia19904 Actinidia chinensis HOM05D003025 ORTHO05D003305 5.5e-16 89.4 299 30.4
Actinidia04793 Actinidia chinensis HOM05D002368 ORTHO05D003305 7.2e-16 89.0 175 34.9
Sabra15G0078800 Salix brachista HOM05D003025 ORTHO05D003305 1.2e-15 88.2 259 33.6
CSS0010260 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 2.1e-15 87.4 422 25.8
TWI31G1177 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 6.1e-15 85.9 221 31.7
Actinidia31928 Actinidia chinensis HOM05D003025 ORTHO05D003305 8.8e-14 82.0 273 31.5
GSVIVG01010102001 Vitis vinifera HOM05D003025 ORTHO05D003305 2.0e-13 80.9 131 45.8
arahy.Tifrunner.gnm1.ann1.161SS5 Arachis hypogaea HOM05D003025 ORTHO05D003305 3.3e-13 80.1 308 29.5
RcHm_v2.0_Chr7g0183741 Rosa chinensis HOM05D003025 ORTHO05D003305 4.4e-13 79.7 256 29.7
Dinv34020 Davidia involucrata HOM05D003025 ORTHO05D003305 9.7e-13 78.6 394 24.6
Ciclev10021731m.g Citrus clementina HOM05D003025 ORTHO05D003305 1.3e-12 78.2 241 31.5
PSO063G1603 Papaver somniferum HOM05D003025 ORTHO05D003305 4.8e-12 76.3 377 25.2
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 6.3e-12 75.9 121 44.6
MD06G1205800 Malus domestica HOM05D003025 ORTHO05D003305 1.1e-11 75.1 327 28.4
Rhsim12G0071300 Rhododendron simsii HOM05D003025 ORTHO05D003305 1.4e-11 74.7 335 25.4
Hma1.2p1_0428F.1_g150820 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 4.1e-11 73.2 114 41.2
Duzib248G1661 Durio zibethinus HOM05D003025 ORTHO05D003305 5.3e-11 72.8 114 43.0
Phvul.009G203900 Phaseolus vulgaris HOM05D011573 ORTHO05D014451 5.3e-11 72.8 231 27.7
MELO3C011401.2 Cucumis melo HOM05D003025 ORTHO05D003305 9.1e-11 72.0 296 27.0
CsaV3_6G033910 Cucumis sativus L. HOM05D003025 ORTHO05D003305 1.2e-10 71.6 357 24.9
C02p51790 Brassica napus HOM05D003025 ORTHO05D003305 2.7e-10 70.5 223 29.1
CSS0010060 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 3.5e-10 70.1 377 24.4
TWI79G0747 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 4.5e-10 69.7 114 44.7
Aqoxy3G03750 Aquilegia oxysepala HOM05D003025 ORTHO05D003305 1.0e-09 68.6 118 39.0
CiPaw.05G121600 Carya illinoinensis HOM05D003025 ORTHO05D003305 1.0e-09 68.6 122 46.7
Potri.008G111800 Populus trichocarpa HOM05D003025 ORTHO05D003305 1.3e-09 68.2 110 44.5
Glyma.02G122700 Glycine max HOM05D003025 ORTHO05D003305 1.7e-09 67.8 189 32.3
Gohir.A13G088100 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.7e-09 67.8 349 25.5
Haze_11858 Corylus avellana HOM05D003025 ORTHO05D003305 2.2e-09 67.4 122 42.6
arahy.Tifrunner.gnm1.ann1.8UFH9N Arachis hypogaea HOM05D003025 ORTHO05D003305 2.9e-09 67.0 304 28.0
Glyma.01G064900 Glycine max HOM05D003025 ORTHO05D003305 2.9e-09 67.0 189 32.3
Actinidia07767 Actinidia chinensis HOM05D003025 ORTHO05D003305 3.8e-09 66.6 116 37.1
CANSAT64G2528 Cannabis sativa HOM05D003025 ORTHO05D003305 3.8e-09 66.6 48 72.9
Duzib205G1035 Durio zibethinus HOM05D003025 ORTHO05D003305 5.0e-09 66.2 267 27.3
Phvul.003G038300 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 5.0e-09 66.2 267 28.5
Gohir.D13G085500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 6.5e-09 65.9 102 46.1
VMungo1215G0401 Vigna mungo HOM05D003025 ORTHO05D003305 8.5e-09 65.5 272 27.2
COL.COLO4_27800 Corchorus olitorius HOM05D003025 ORTHO05D003305 1.1e-08 65.1 169 36.1
Eucgr.G02421 Eucalyptus grandis HOM05D003025 ORTHO05D003305 1.1e-08 65.1 192 30.2
Manes.14G090300 Manihot esculenta HOM05D003025 ORTHO05D003305 1.1e-08 65.1 117 41.0
vmacro10474 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 1.1e-08 65.1 116 40.5
Medtr2g461480 Medicago truncatula HOM05D011573 ORTHO05D014451 1.9e-08 64.3 229 28.4
Potri.010G138100 Populus trichocarpa HOM05D003025 ORTHO05D003305 2.5e-08 63.9 105 47.6
Sed0026748 Sechium edule HOM05D025218 ORTHO05D025068 2.5e-08 63.9 300 25.0
ClCG08G010610 Citrullus lanatus HOM05D003025 ORTHO05D003305 4.2e-08 63.2 123 37.4
Gorai.013G097400 Gossypium raimondii HOM05D003025 ORTHO05D003305 4.2e-08 63.2 346 23.4
THA.LOC104801838 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 4.2e-08 63.2 287 27.2
Thecc.02G322700 Theobroma cacao HOM05D003025 ORTHO05D003305 5.5e-08 62.8 114 39.5
HanXRQChr17g0568661 Helianthus annuus HOM05D003025 ORTHO05D003305 9.4e-08 62.0 264 26.5
CiPaw.06G095000 Carya illinoinensis HOM05D003025 ORTHO05D003305 1.2e-07 61.6 114 46.5
Duzib084G0521 Durio zibethinus HOM05D003025 ORTHO05D003305 1.6e-07 61.2 247 29.1
Eucgr.B03118 Eucalyptus grandis HOM05D003025 ORTHO05D003305 1.6e-07 61.2 174 32.8
Nitab4.5_0001071g0040 Nicotiana tabacum HOM05D003025 ORTHO05D003305 1.6e-07 61.2 72 51.4
Nitab4.5_0005994g0010 Nicotiana tabacum HOM05D017485 ORTHO05D020287 1.6e-07 61.2 238 29.4
ClCG06G015430 Citrullus lanatus HOM05D025218 ORTHO05D025068 2.1e-07 60.8 139 28.1
VMungo1309G0453 Vigna mungo HOM05D011573 ORTHO05D014451 2.1e-07 60.8 264 25.8
Cc11_g11550 Coffea canephora HOM05D003025 ORTHO05D003305 3.6e-07 60.1 70 52.9
Migut.L01161 Erythranthe guttata HOM05D003025 ORTHO05D003305 3.6e-07 60.1 342 23.7
Sc04g0007330 Simmondsia chinensis HOM05D003025 ORTHO05D003305 3.6e-07 60.1 114 37.7
Thecc.03G108500 Theobroma cacao HOM05D003025 ORTHO05D003305 3.6e-07 60.1 272 28.7
Peaxi162Scf00026g00314 Petunia axillaris HOM05D003025 ORTHO05D003305 8.0e-07 58.9 111 41.4
Rhsim09G0122100 Rhododendron simsii HOM05D003025 ORTHO05D003305 8.0e-07 58.9 116 39.7
Gorai.005G147700 Gossypium raimondii HOM05D003025 ORTHO05D003305 1.0e-06 58.5 115 37.4
PGR102G2660 Punica granatum HOM05D003025 ORTHO05D003305 1.0e-06 58.5 102 38.2
PGSC0003DMG404024620 Solanum tuberosum HOM05D017485 ORTHO05D020287 1.0e-06 58.5 227 25.6
Sed0001557 Sechium edule HOM05D003025 ORTHO05D003305 1.4e-06 58.2 203 29.6
THA.LOC104824052 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 1.4e-06 58.2 121 38.8
Lj6A773T133 Lonicera japonica HOM05D003025 ORTHO05D003305 1.8e-06 57.8 106 38.7
Manes.06G079500 Manihot esculenta HOM05D003025 ORTHO05D003305 1.8e-06 57.8 60 53.3
MBI15_g31908_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 2.3e-06 57.4 115 38.3
PGR119G1479 Punica granatum HOM05D003025 ORTHO05D003305 2.3e-06 57.4 216 30.1
Sabra08G0084400 Salix brachista HOM05D003025 ORTHO05D003305 3.0e-06 57.0 106 42.5
CAN.G982.40 Capsicum annuum HOM05D017485 ORTHO05D020287 4.0e-06 56.6 227 26.0
Duzib251G0179 Durio zibethinus HOM05D003025 ORTHO05D003305 4.0e-06 56.6 114 35.1
Gohir.A03G106600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 4.0e-06 56.6 115 36.5
Gohir.D02G131800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 4.0e-06 56.6 115 36.5
Gorai.001G067100 Gossypium raimondii HOM05D003025 ORTHO05D003305 4.0e-06 56.6 239 29.3
HanXRQChr12g0365071 Helianthus annuus HOM05D003025 ORTHO05D003305 5.2e-06 56.2 251 24.7
Lj2g0017874 Lotus japonicus HOM05D003025 ORTHO05D003305 5.2e-06 56.2 100 44.0
Lalb_Chr17g0341461 Lupinus albus HOM05D003025 ORTHO05D003305 5.2e-06 56.2 71 54.9
Nitab4.5_0002491g0030 Nicotiana tabacum HOM05D003025 ORTHO05D003305 5.2e-06 56.2 45 68.9


User provided reference genes

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