Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.1e-156 556.6 290 100.0
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 8.4e-144 513.8 290 92.1
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.8e-130 469.5 290 86.9
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 1.0e-101 374.0 290 69.3
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.8e-99 365.9 296 68.2
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 3.4e-97 359.0 290 66.9
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.4e-95 353.6 291 64.6
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 5.3e-90 335.1 296 64.9
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 5.0e-88 328.6 311 57.6
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.0e-85 320.9 293 58.7
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 1.0e-85 320.9 293 58.7
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 2.0e-84 316.6 288 61.1
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 8.2e-83 311.2 290 58.6
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.8e-82 310.1 311 57.2
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.3e-82 308.5 174 90.2
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 7.0e-82 308.1 174 89.7
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 1.0e-80 304.3 295 59.0
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 2.3e-77 293.1 294 57.8
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 6.7e-77 291.6 296 57.4
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.5e-76 290.4 293 55.3
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 2.6e-76 289.7 365 49.3
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 4.8e-75 285.4 302 55.6
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 8.2e-75 284.6 317 51.4
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 2.4e-74 283.1 296 56.4
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 7.0e-74 281.6 384 46.4
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 1.7e-72 276.9 274 54.4
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 3.2e-71 272.7 396 44.2
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 4.2e-71 272.3 389 45.5
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 9.4e-71 271.2 320 50.0
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 2.1e-70 270.0 276 57.2
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 2.1e-70 270.0 293 52.9
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 3.6e-70 269.2 315 53.3
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 6.1e-70 268.5 292 55.8
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 6.8e-69 265.0 255 57.6
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 2.0e-68 263.5 306 51.6
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 2.0e-68 263.5 288 50.0
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 2.6e-68 263.1 310 50.6
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 3.1e-66 256.1 290 51.4
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 4.1e-66 255.8 288 52.1
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 1.2e-65 254.2 339 48.1
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 4.5e-65 252.3 293 50.2
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 5.9e-65 251.9 277 56.0
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 7.7e-65 251.5 277 56.0
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 1.3e-64 250.8 277 56.0
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.5e-64 248.4 303 49.5
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 2.5e-63 246.5 276 51.1
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.2e-63 246.1 342 46.5
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 4.2e-63 245.7 293 48.8
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 9.5e-63 244.6 293 48.8
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 2.1e-62 243.4 341 44.9
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 2.8e-62 243.0 301 49.8
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 2.8e-62 243.0 293 50.5
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.6e-62 242.7 343 48.7
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.3e-61 240.0 300 48.0
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 3.0e-61 239.6 292 50.0
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 1.2e-60 237.7 293 50.2
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 3.4e-60 236.1 376 43.1
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 4.4e-60 235.7 341 44.0
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 5.7e-60 235.3 293 47.1
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.5e-60 235.0 286 49.0
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 9.8e-60 234.6 353 44.8
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.7e-59 233.8 292 45.9
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 2.2e-59 233.4 286 46.9
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.8e-59 233.0 298 47.7
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 3.7e-59 232.6 294 48.0
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 8.3e-59 231.5 301 50.2
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.4e-58 229.9 281 52.0
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 3.1e-58 229.6 323 44.3
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 9.2e-58 228.0 330 44.8
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 9.2e-58 228.0 371 42.9
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 1.6e-57 227.3 288 49.3
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 2.7e-57 226.5 302 45.7
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 2.7e-57 226.5 232 52.2
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.7e-56 223.8 376 41.5
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 2.9e-56 223.0 288 49.3
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 6.6e-56 221.9 289 46.0
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 6.6e-56 221.9 339 43.4
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 6.6e-56 221.9 291 48.1
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 8.6e-56 221.5 343 43.4
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.5e-55 220.7 347 43.5
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 7.3e-55 218.4 331 42.6
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 1.6e-54 217.2 310 45.2
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 2.1e-54 216.9 313 43.8
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 6.1e-54 215.3 175 67.4
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.0e-54 214.9 286 44.8
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.0e-53 214.5 243 48.1
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.4e-53 214.2 313 43.1
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 8.9e-53 211.5 293 43.3
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 8.9e-53 211.5 318 45.0
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 3.4e-52 209.5 316 43.4
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 3.4e-52 209.5 293 42.7
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 9.8e-52 208.0 398 37.7
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 1.7e-51 207.2 274 44.5
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 4.9e-51 205.7 355 41.4
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 1.8e-50 203.8 296 44.6
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 2.4e-50 203.4 293 42.3
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 4.1e-50 202.6 173 62.4
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.6e-49 200.7 297 42.8
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 1.0e-48 198.0 376 38.6
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.0e-48 198.0 279 44.4
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.3e-48 197.6 280 44.6
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 3.0e-48 196.4 338 41.1
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 6.6e-48 195.3 278 43.9
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 3.3e-47 193.0 242 47.5
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 2.1e-46 190.3 176 53.4
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 3.6e-46 189.5 278 42.4
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 1.4e-45 187.6 355 40.3
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 3.1e-45 186.4 171 58.5
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.2e-45 185.7 295 41.7
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 2.0e-44 183.7 208 49.0
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 1.4e-42 177.6 215 46.0
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 3.5e-41 172.9 276 40.9
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 7.8e-41 171.8 296 43.2
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 1.1e-39 167.9 295 41.0
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.2e-38 164.5 335 37.0
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 4.0e-37 159.5 236 42.8
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 4.0e-37 159.5 297 41.1
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 4.0e-37 159.5 175 50.3
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 8.9e-37 158.3 287 40.1
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.2e-36 157.9 290 37.2
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 1.2e-36 157.9 287 36.9
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 2.0e-36 157.1 294 38.8
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 2.6e-36 156.8 300 36.7
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 2.6e-36 156.8 300 36.7
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 7.5e-36 155.2 245 42.9
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 7.5e-36 155.2 299 37.1
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 7.5e-36 155.2 368 35.3
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 9.8e-36 154.8 246 41.9
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 9.8e-36 154.8 296 39.9
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 9.8e-36 154.8 296 39.9
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 1.9e-34 150.6 191 46.6
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 2.4e-34 150.2 240 38.8
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 9.2e-34 148.3 114 65.8
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 2.1e-33 147.1 290 37.9
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 4.6e-33 146.0 298 37.6
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.9e-31 140.6 297 36.0
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 3.3e-31 139.8 238 41.6
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 7.3e-31 138.7 259 39.0
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 4.7e-30 136.0 267 36.3
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 8.1e-30 135.2 251 38.6
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 1.1e-29 134.8 165 45.5
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 7.6e-28 128.6 193 43.0
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 9.9e-28 128.3 250 36.8
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.9e-27 125.9 122 54.1
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.4e-26 123.6 223 38.6
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.2e-25 121.3 292 32.2
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 4.6e-25 119.4 351 28.2
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.5e-23 114.4 91 58.2
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 2.8e-22 110.2 284 32.4
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 6.9e-21 105.5 152 41.4
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.9e-19 100.1 93 61.3
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.3e-16 90.5 233 31.8
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 5.1e-16 89.4 277 31.4
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 6.2e-14 82.4 154 40.3
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 4.0e-13 79.7 116 42.2
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 1.5e-12 77.8 173 34.7
arahy.Tifrunner.gnm1.ann1.ZI9W5R Arachis hypogaea HOM05D004296 ORTHO05D005045 5.8e-12 75.9 147 37.4
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 9.9e-12 75.1 55 61.8
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 2.4e-10 70.5 167 32.9
Nitab4.5_0001315g0090 Nicotiana tabacum HOM05D004296 ORTHO05D005045 6.0e-09 65.9 93 48.4
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 1.0e-08 65.1 88 44.3
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 1.3e-08 64.7 78 47.4
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 8.7e-08 62.0 235 26.0
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 1.1e-07 61.6 122 31.1
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.1e-06 57.4 128 30.5


User provided reference genes

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