Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030269 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D004772 1.5e-203 712.6 357 100.0
CSS0028520 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D013260 7.1e-28 129.0 123 57.7
CSS0017908 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D013260 3.7e-24 116.7 109 56.0
Actinidia29790 Actinidia chinensis HOM05D004047 ORTHO05D004772 4.8e-24 116.3 104 62.5
Actinidia37973 Actinidia chinensis HOM05D004047 ORTHO05D004772 1.8e-23 114.4 104 62.5
CSS0029692 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 1.8e-23 114.4 110 61.8
Dinv31823 Davidia involucrata HOM05D004047 ORTHO05D004772 4.0e-23 113.2 104 62.5
CSS0000863 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D013260 1.0e-21 108.6 80 65.0
Rhsim07G0245700 Rhododendron simsii HOM05D004047 ORTHO05D004772 1.3e-21 108.2 124 54.8
CSS0011131 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 1.7e-21 107.8 128 57.0
CSS0031901 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D013260 2.5e-20 104.0 80 65.0
vmacro04336 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 9.3e-20 102.1 83 67.5
Rhsim02G0184000 Rhododendron simsii HOM05D010463 ORTHO05D017724 3.5e-19 100.1 230 30.4
CSS0028152 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D013260 4.6e-19 99.8 93 57.0
CSS0028511 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D000001 3.9e-18 96.7 104 54.8
Duzib041G0005 Durio zibethinus HOM05D004047 ORTHO05D004772 5.1e-18 96.3 99 54.5
CSS0028650 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D013260 1.1e-17 95.1 79 62.0
CSS0041521 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D017724 2.5e-17 94.0 174 36.8
Dinv39496 Davidia involucrata HOM05D004047 ORTHO05D004772 2.5e-17 94.0 81 65.4
Ciclev10000295m.g Citrus clementina HOM05D004047 ORTHO05D004772 3.3e-17 93.6 85 60.0
Thecc.08G040700 Theobroma cacao HOM05D004047 ORTHO05D004772 9.7e-17 92.0 119 46.2
Gorai.009G196200 Gossypium raimondii HOM05D004047 ORTHO05D004772 2.8e-16 90.5 94 53.2
CSS0006020 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.8e-16 89.7 204 29.4
Cpa.g.sc26.21 Carica papaya HOM05D004047 ORTHO05D004772 8.2e-16 89.0 84 60.7
Gohir.A05G188000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 8.2e-16 89.0 94 53.2
Lj4C28G12 Lonicera japonica HOM05D004047 ORTHO05D003043 1.4e-15 88.2 84 58.3
Actinidia15402 Actinidia chinensis HOM05D004047 ORTHO05D004772 2.4e-15 87.4 77 64.9
Lj4A794G38 Lonicera japonica HOM05D004047 ORTHO05D004772 2.4e-15 87.4 87 55.2
vmacro04323 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 2.4e-15 87.4 73 68.5
GSVIVG01009858001 Vitis vinifera HOM05D004047 ORTHO05D004772 4.1e-15 86.7 72 65.3
CSS0020709 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D013260 5.3e-15 86.3 80 51.2
Gohir.D05G191000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 6.9e-15 85.9 94 51.1
Nn6g32284 Nelumbo nucifera HOM05D004047 ORTHO05D004772 9.0e-15 85.5 85 57.6
TAR376G1182 Trochodendron aralioides HOM05D004047 ORTHO05D004772 1.2e-14 85.1 96 53.1
TAR381G0884 Trochodendron aralioides HOM05D004047 ORTHO05D004772 1.2e-14 85.1 100 53.0
Gohir.D01G099500 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.5e-14 84.7 94 51.1
Gorai.002G124800 Gossypium raimondii HOM05D004047 ORTHO05D004772 1.5e-14 84.7 94 51.1
Duzib116G0032 Durio zibethinus HOM05D004047 ORTHO05D004772 2.6e-14 84.0 76 60.5
Oeu054711.1 Olea europaea HOM05D004047 ORTHO05D004772 3.4e-14 83.6 127 42.5
PSO675G6151 Papaver somniferum HOM05D004047 ORTHO05D004772 5.9e-14 82.8 81 56.8
Rhsim04G0123900 Rhododendron simsii HOM05D000182 ORTHO05D000112 5.9e-14 82.8 257 26.8
RhsimUnG0237200 Rhododendron simsii HOM05D000002 ORTHO05D013260 7.6e-14 82.4 254 26.0
CSS0043805 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.7e-13 81.3 199 29.1
Gohir.A01G112700 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.7e-13 81.3 94 50.0
PSO541G1521 Papaver somniferum HOM05D004047 ORTHO05D004772 1.7e-13 81.3 81 55.6
Prupe.1G369000 Prunus persica HOM05D004047 ORTHO05D004772 1.7e-13 81.3 90 54.4
DCAR_022438 Daucus carota HOM05D004047 ORTHO05D004772 2.9e-13 80.5 105 45.7
Nn5g29267 Nelumbo nucifera HOM05D004047 ORTHO05D004772 2.9e-13 80.5 81 58.0
RcHm_v2.0_Chr6g0302451 Rosa chinensis HOM05D004047 ORTHO05D004772 3.8e-13 80.1 85 56.5
CiPaw.08G064100 Carya illinoinensis HOM05D004047 ORTHO05D004772 5.0e-13 79.7 98 48.0
Haze_22603 Corylus avellana HOM05D004047 ORTHO05D004772 5.0e-13 79.7 98 49.0
Rhsim01G0085300 Rhododendron simsii HOM05D000002 ORTHO05D000047 5.0e-13 79.7 243 27.6
Eucgr.F01629 Eucalyptus grandis HOM05D004047 ORTHO05D004772 6.5e-13 79.3 82 56.1
Duzib093G0674 Durio zibethinus HOM05D004047 ORTHO05D004772 8.5e-13 79.0 94 50.0
MBI05_g26515_MAGBIO Magnolia biondii HOM05D004047 ORTHO05D004772 1.4e-12 78.2 84 53.6
Cfa013920 Carpinus fangiana HOM05D004047 ORTHO05D004772 4.2e-12 76.6 104 46.2
Ca_13402_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 5.5e-12 76.3 109 45.0
Ca_13415_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 5.5e-12 76.3 109 45.0
Ca_29786_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 5.5e-12 76.3 109 45.0
MD08G1015800 Malus domestica HOM05D004047 ORTHO05D004772 5.5e-12 76.3 90 52.2
arahy.Tifrunner.gnm1.ann1.261ZZU Arachis hypogaea HOM05D004047 ORTHO05D004772 9.3e-12 75.5 74 54.1
Atru.chr13.329 Acer truncatum HOM05D004047 ORTHO05D004772 1.2e-11 75.1 85 50.6
CSS0020839 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D013260 1.2e-11 75.1 77 49.4
Manes.18G016100 Manihot esculenta HOM05D004047 ORTHO05D004772 1.2e-11 75.1 102 52.9
CSS0023034 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D013260 2.7e-11 73.9 62 54.8
Potri.002G025200 Populus trichocarpa HOM05D004047 ORTHO05D004772 3.6e-11 73.6 117 44.4
arahy.Tifrunner.gnm1.ann1.GHU3Y0 Arachis hypogaea HOM05D004047 ORTHO05D004772 4.6e-11 73.2 74 52.7
CSS0004988 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.6e-11 73.2 93 39.8
DCAR_009937 Daucus carota HOM05D004047 ORTHO05D004772 4.6e-11 73.2 91 46.2
CSS0017443 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D013260 7.9e-11 72.4 104 46.2
Glyma.06G025800 Glycine max HOM05D004047 ORTHO05D004772 1.0e-10 72.0 71 56.3
Actinidia16963 Actinidia chinensis HOM05D004047 ORTHO05D004772 2.3e-10 70.9 77 59.7
Lj5g0017583 Lotus japonicus HOM05D004047 ORTHO05D004772 2.3e-10 70.9 98 44.9
Hund05219 Selenicereus undatus HOM05D004047 ORTHO05D004772 2.3e-10 70.9 82 51.2
TWI12G0119 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 2.3e-10 70.9 81 54.3
QL02p010984 Quercus lobata HOM05D004047 ORTHO05D004772 3.0e-10 70.5 84 46.4
arahy.Tifrunner.gnm1.ann1.D2JYDS Arachis hypogaea HOM05D004047 ORTHO05D004772 3.9e-10 70.1 98 40.8
Cc10_g01950 Coffea canephora HOM05D004047 ORTHO05D004772 5.1e-10 69.7 74 54.1
CsaV3_2G029380 Cucumis sativus L. HOM05D004047 ORTHO05D004772 5.1e-10 69.7 111 43.2
CSS0008375 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D013260 6.7e-10 69.3 148 37.2
CSS0030045 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D013260 6.7e-10 69.3 148 37.2
FvH4_2g38820 Fragaria vesca HOM05D004047 ORTHO05D004772 6.7e-10 69.3 85 50.6
VMungo1309G2404 Vigna mungo HOM05D004047 ORTHO05D004772 6.7e-10 69.3 67 56.7
Medtr1g023760 Medicago truncatula HOM05D004047 ORTHO05D004772 1.5e-09 68.2 81 48.1
arahy.Tifrunner.gnm1.ann1.7CTW4M Arachis hypogaea HOM05D004047 ORTHO05D004772 1.9e-09 67.8 98 40.8
TPR.G34366 Trifolium pratense HOM05D004047 ORTHO05D004772 1.9e-09 67.8 59 59.3
FAN15G3510 Fragaria x ananassa HOM05D004047 ORTHO05D004772 2.5e-09 67.4 84 48.8
Aqoxy5G01461 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 3.3e-09 67.0 76 52.6
ClCG08G014420 Citrullus lanatus HOM05D004047 ORTHO05D004772 3.3e-09 67.0 114 35.1
Ah.11g039490 Amaranthus hybridus HOM05D004047 ORTHO05D004772 4.3e-09 66.6 93 47.3
Lalb_Chr11g0062011 Lupinus albus HOM05D004047 ORTHO05D004772 4.3e-09 66.6 77 49.4
CSS0027496 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D017724 5.7e-09 66.2 40 75.0
Glyma.04G026000 Glycine max HOM05D004047 ORTHO05D004772 5.7e-09 66.2 69 53.6
Phvul.009G015200 Phaseolus vulgaris HOM05D004047 ORTHO05D004772 5.7e-09 66.2 67 53.7
PGR083G1283 Punica granatum HOM05D004047 ORTHO05D004772 5.7e-09 66.2 59 61.0
Sc02g0008420 Simmondsia chinensis HOM05D004047 ORTHO05D004772 5.7e-09 66.2 76 47.4
CANSAT25G0097 Cannabis sativa HOM05D004047 ORTHO05D004772 9.7e-09 65.5 99 40.4
MELO3C010997.2 Cucumis melo HOM05D004047 ORTHO05D004772 9.7e-09 65.5 111 41.4
FAN27G1251 Fragaria x ananassa HOM05D004047 ORTHO05D004772 1.3e-08 65.1 82 48.8
Potri.005G236200 Populus trichocarpa HOM05D004047 ORTHO05D004772 1.7e-08 64.7 134 35.8
Sed0024056 Sechium edule HOM05D004047 ORTHO05D004772 1.7e-08 64.7 113 38.9
CDE04G1192 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 2.2e-08 64.3 84 45.2
HanXRQChr04g0101151 Helianthus annuus HOM05D004047 ORTHO05D004772 2.8e-08 63.9 75 46.7
FAN20G0280 Fragaria x ananassa HOM05D004047 ORTHO05D004772 3.7e-08 63.5 85 48.2
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 3.7e-08 63.5 117 42.7
CsaV3_3G045640 Cucumis sativus L. HOM05D004047 ORTHO05D004772 4.8e-08 63.2 91 44.0
CSS0009795 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.3e-08 62.8 100 33.0
Sabra05G0182600 Salix brachista HOM05D004047 ORTHO05D004772 6.3e-08 62.8 101 41.6
Lalb_Chr08g0246131 Lupinus albus HOM05D004047 ORTHO05D004772 8.2e-08 62.4 74 44.6
PSO210G3933 Papaver somniferum HOM05D004047 ORTHO05D004772 8.2e-08 62.4 92 48.9
TWI56G0272 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 8.2e-08 62.4 80 50.0
TWI77G0837 Tripterygium wilfordii HOM05D000002 ORTHO05D013260 8.2e-08 62.4 207 26.1
TWI77G0936 Tripterygium wilfordii HOM05D010463 ORTHO05D013260 1.1e-07 62.0 63 50.8
CSS0024820 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-07 61.6 83 36.1
CDE02G3574 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 1.4e-07 61.6 84 46.4
PSO170G4872 Papaver somniferum HOM05D004047 ORTHO05D004772 1.4e-07 61.6 92 48.9
Psat6g004160 Pisum sativum HOM05D004047 ORTHO05D004772 1.4e-07 61.6 52 63.5
Aqoxy6G00312 Aquilegia oxysepala HOM05D000051 ORTHO05D031295 1.8e-07 61.2 94 43.6
Nitab4.5_0001242g0060 Nicotiana tabacum HOM05D004047 ORTHO05D004772 1.8e-07 61.2 75 45.3
ECA238G1430 Erigeron canadensis HOM05D004047 ORTHO05D004772 3.1e-07 60.5 74 44.6
Lj1g0015956 Lotus japonicus HOM05D004047 ORTHO05D004772 3.1e-07 60.5 79 40.5
Lalb_Chr14g0369751 Lupinus albus HOM05D004047 ORTHO05D004772 3.1e-07 60.5 74 50.0
Aqoxy6G02326 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 4.1e-07 60.1 72 55.6
MELO3C003773.2 Cucumis melo HOM05D004047 ORTHO05D004772 4.1e-07 60.1 91 41.8
Sed0015788 Sechium edule HOM05D004047 ORTHO05D004772 6.9e-07 59.3 74 44.6
CSS0014506 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.1e-07 58.9 100 32.0
ClCG05G018530 Citrullus lanatus HOM05D004047 ORTHO05D004772 1.2e-06 58.5 133 31.6
ECA233G3940 Erigeron canadensis HOM05D004047 ORTHO05D004772 2.6e-06 57.4 59 50.8
Peaxi162Scf00186g00119 Petunia axillaris HOM05D004047 ORTHO05D004772 2.6e-06 57.4 71 47.9
HanXRQChr13g0387331 Helianthus annuus HOM05D004047 ORTHO05D004772 3.4e-06 57.0 55 50.9
EL10Ac1g02250 Beta vulgaris HOM05D004047 ORTHO05D004772 5.9e-06 56.2 68 47.1


User provided reference genes

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