Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030261 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D009096 4.2e-36 154.1 72 100.0
CSS0041586 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D009096 3.2e-20 101.3 60 80.0
Rhsim12G0050200 Rhododendron simsii HOM05D001690 ORTHO05D009096 3.2e-20 101.3 60 78.3
vmacro01197 Vaccinium macrocarpon HOM05D001690 ORTHO05D009096 3.2e-20 101.3 60 78.3
SalBow2G0686 Salvia bowleyana HOM05D001690 ORTHO05D009096 7.1e-20 100.1 60 75.0
SalBow2G2592 Salvia bowleyana HOM05D001690 ORTHO05D009096 7.1e-20 100.1 60 75.0
GSVIVG01020171001 Vitis vinifera HOM05D001690 ORTHO05D009096 7.1e-20 100.1 60 75.0
Cfa009103 Carpinus fangiana HOM05D001690 ORTHO05D009096 9.3e-20 99.8 60 80.0
COL.COLO4_37898 Corchorus olitorius HOM05D001690 ORTHO05D002627 9.3e-20 99.8 60 76.7
Haze_12139 Corylus avellana HOM05D001690 ORTHO05D009096 1.6e-19 99.0 60 80.0
Migut.L01445 Erythranthe guttata HOM05D001690 ORTHO05D009096 1.6e-19 99.0 60 73.3
MBI14_g12607_MAGBIO Magnolia biondii HOM05D001690 ORTHO05D009096 1.6e-19 99.0 60 68.3
SGA_v2.0_scaffold8G04246 Striga asiatica HOM05D001690 ORTHO05D009096 2.1e-19 98.6 60 71.7
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 4.6e-19 97.4 60 76.7
Dinv30998 Davidia involucrata HOM05D001690 ORTHO05D009096 4.6e-19 97.4 60 76.7
Dinv31105 Davidia involucrata HOM05D001690 ORTHO05D009096 4.6e-19 97.4 60 76.7
Hma1.2p1_0160F.1_g070590 Hydrangea macrophylla HOM05D001690 ORTHO05D009096 4.6e-19 97.4 60 76.7
CiPaw.06G074800 Carya illinoinensis HOM05D001690 ORTHO05D009096 6.1e-19 97.1 60 75.0
QL03p062480 Quercus lobata HOM05D001690 ORTHO05D009096 6.1e-19 97.1 60 75.0
unitig_699.g19928 Utricularia gibba HOM05D001690 ORTHO05D009096 6.1e-19 97.1 60 71.7
Sabra08G0111900 Salix brachista HOM05D001690 ORTHO05D009096 7.9e-19 96.7 58 77.6
Cc11_g14250 Coffea canephora HOM05D001690 ORTHO05D009096 1.0e-18 96.3 60 71.7
Cpa.g.sc5.350 Carica papaya HOM05D001690 ORTHO05D009096 1.3e-18 95.9 58 75.9
RcHm_v2.0_Chr4g0444521 Rosa chinensis HOM05D001690 ORTHO05D009096 1.3e-18 95.9 60 75.0
Aa31LG7G7870 Aethionema arabicum HOM05D001690 ORTHO05D009096 1.8e-18 95.5 58 77.6
Lj2g0027896 Lotus japonicus HOM05D001690 ORTHO05D009096 1.8e-18 95.5 60 75.0
vmacro12906 Vaccinium macrocarpon HOM05D001690 ORTHO05D009096 1.8e-18 95.5 67 68.7
Atru.chr11.1963 Acer truncatum HOM05D001690 ORTHO05D009096 2.3e-18 95.1 58 74.1
Aqoxy3G03080 Aquilegia oxysepala HOM05D001690 ORTHO05D009096 3.0e-18 94.7 60 71.7
Manes.01G196800 Manihot esculenta HOM05D001690 ORTHO05D009096 3.0e-18 94.7 58 74.1
Lj3C1049G3 Lonicera japonica HOM05D001690 ORTHO05D009096 3.9e-18 94.4 60 73.3
TAR629G0556 Trochodendron aralioides HOM05D001690 ORTHO05D009096 3.9e-18 94.4 60 68.3
Ciclev10033984m.g Citrus clementina HOM05D001690 ORTHO05D009096 6.7e-18 93.6 58 72.4
Gohir.A03G142400 Gossypium hirsutum HOM05D001690 ORTHO05D009096 6.7e-18 93.6 60 70.0
Gohir.D02G165700 Gossypium hirsutum HOM05D001690 ORTHO05D009096 6.7e-18 93.6 60 70.0
Gorai.005G185800 Gossypium raimondii HOM05D001690 ORTHO05D009096 6.7e-18 93.6 60 70.0
Potri.008G147000 Populus trichocarpa HOM05D001690 ORTHO05D009096 6.7e-18 93.6 58 72.4
arahy.Tifrunner.gnm1.ann1.00SZA6 Arachis hypogaea HOM05D001690 ORTHO05D009096 8.7e-18 93.2 60 73.3
TPR.G13490 Trifolium pratense HOM05D001690 ORTHO05D009096 8.7e-18 93.2 58 74.1
MSTRG.621 Avicennia marina HOM05D001690 ORTHO05D009096 1.1e-17 92.8 60 70.0
CARHR024380 Cardamine hirsuta HOM05D001690 ORTHO05D009096 1.1e-17 92.8 58 74.1
Psat2g111480 Pisum sativum HOM05D001690 ORTHO05D009096 1.1e-17 92.8 58 74.1
FvH4_4g35000 Fragaria vesca HOM05D001690 ORTHO05D009096 1.5e-17 92.4 60 71.7
FAN07G2318 Fragaria x ananassa HOM05D001690 ORTHO05D009096 1.5e-17 92.4 60 71.7
FAN12G1851 Fragaria x ananassa HOM05D001690 ORTHO05D009096 1.5e-17 92.4 60 71.7
FAN22G0616 Fragaria x ananassa HOM05D001690 ORTHO05D009096 1.5e-17 92.4 60 71.7
Medtr5g035310 Medicago truncatula HOM05D001690 ORTHO05D009096 1.5e-17 92.4 58 72.4
Sc14g0008550 Simmondsia chinensis HOM05D001690 ORTHO05D009096 1.5e-17 92.4 58 70.7
Actinidia08182 Actinidia chinensis HOM05D001690 ORTHO05D009096 1.9e-17 92.0 60 71.7
Lalb_Chr09g0326501 Lupinus albus HOM05D001690 ORTHO05D009096 1.9e-17 92.0 60 73.3
Thecc.02G242600 Theobroma cacao HOM05D001690 ORTHO05D009096 1.9e-17 92.0 60 70.0
Zm00001eb371950 Zea mays HOM05D001690 ORTHO05D009096 1.9e-17 92.0 60 66.7
AT1G24095 Arabidopsis thaliana HOM05D001690 ORTHO05D009096 2.5e-17 91.7 58 72.4
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 2.5e-17 91.7 58 67.2
PGR119G1314 Punica granatum HOM05D001690 ORTHO05D009096 2.5e-17 91.7 58 70.7
TWI18G1158 Tripterygium wilfordii HOM05D001690 ORTHO05D002627 2.5e-17 91.7 58 67.2
Duzib248G1036 Durio zibethinus HOM05D001690 ORTHO05D009096 3.3e-17 91.3 60 70.0
Thhalv10008745m.g Eutrema salsugineum HOM05D001690 ORTHO05D009096 3.3e-17 91.3 60 70.0
TWI36G1443 Tripterygium wilfordii HOM05D001690 ORTHO05D002627 3.3e-17 91.3 58 65.5
Peaxi162Scf00421g00710 Petunia axillaris HOM05D001690 ORTHO05D009096 4.3e-17 90.9 60 68.3
AL1G37900 Arabidopsis lyrata HOM05D001690 ORTHO05D009096 5.7e-17 90.5 58 70.7
EL10Ac5g10984 Beta vulgaris HOM05D001690 ORTHO05D009096 7.4e-17 90.1 60 66.7
BcaB07g32380 Brassica carinata HOM05D001690 ORTHO05D009096 7.4e-17 90.1 58 70.7
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 9.7e-17 89.7 58 70.7
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 9.7e-17 89.7 58 70.7
BraA09t39574Z Brassica rapa HOM05D001690 ORTHO05D009096 9.7e-17 89.7 58 70.7
Carub.0001s2353 Capsella rubella HOM05D001690 ORTHO05D009096 9.7e-17 89.7 58 69.0
CDE04G3384 Ceratophyllum demersum HOM05D001690 ORTHO05D009096 1.3e-16 89.4 60 70.0
Lsat_1_v5_gn_4_6521 Lactuca sativa HOM05D001690 ORTHO05D009096 1.3e-16 89.4 58 69.0
Sp1g21410 Schrenkiella parvula HOM05D001690 ORTHO05D009096 1.3e-16 89.4 58 70.7
CANSAT25G2126 Cannabis sativa HOM05D001690 ORTHO05D009096 1.6e-16 89.0 58 70.7
HanXRQChr04g0103621 Helianthus annuus HOM05D001690 ORTHO05D009096 1.6e-16 89.0 58 65.5
Nitab4.5_0000257g0260 Nicotiana tabacum HOM05D001690 ORTHO05D009096 1.6e-16 89.0 60 68.3
Nitab4.5_0005722g0030 Nicotiana tabacum HOM05D001690 ORTHO05D009096 2.2e-16 88.6 60 68.3
BcaC05g26303 Brassica carinata HOM05D001690 ORTHO05D009096 2.8e-16 88.2 58 69.0
BolC5t31021H Brassica oleracea HOM05D001690 ORTHO05D009096 2.8e-16 88.2 58 69.0
AUR62026581 Chenopodium quinoa HOM05D001690 ORTHO05D009096 2.8e-16 88.2 60 66.7
DCAR_026553 Daucus carota HOM05D001690 ORTHO05D009096 2.8e-16 88.2 58 70.7
Hund25316 Selenicereus undatus HOM05D001690 ORTHO05D009096 2.8e-16 88.2 60 68.3
PGSC0003DMG400015577 Solanum tuberosum HOM05D001690 ORTHO05D009096 2.8e-16 88.2 60 65.0
Hund05955 Selenicereus undatus HOM05D001690 ORTHO05D009096 3.7e-16 87.8 60 66.7
CANSAT35G0663 Cannabis sativa HOM05D001690 ORTHO05D009096 4.8e-16 87.4 58 69.0
Solyc05g006100.4 Solanum lycopersicum HOM05D001690 ORTHO05D009096 4.8e-16 87.4 60 65.0
Sopen05g002120 Solanum pennellii HOM05D001690 ORTHO05D009096 4.8e-16 87.4 60 65.0
AUR62039406 Chenopodium quinoa HOM05D001690 ORTHO05D009096 6.3e-16 87.0 60 66.7
THA.LOC109116916 Tarenaya hassleriana HOM05D001690 ORTHO05D009096 6.3e-16 87.0 58 67.2
MD13G1087000 Malus domestica HOM05D001690 ORTHO05D009096 8.2e-16 86.7 60 68.3
Prupe.1G259700 Prunus persica HOM05D001690 ORTHO05D009096 8.2e-16 86.7 60 70.0
Glyma.02G037900 Glycine max HOM05D001690 ORTHO05D009096 1.8e-15 85.5 60 68.3
PSO063G0131 Papaver somniferum HOM05D001690 ORTHO05D009096 3.1e-15 84.7 58 62.1
PSO832G0212 Papaver somniferum HOM05D001690 ORTHO05D009096 3.1e-15 84.7 58 62.1
VMungo1215G1997 Vigna mungo HOM05D001690 ORTHO05D009096 3.1e-15 84.7 60 66.7
CAN.G1160.1 Capsicum annuum HOM05D001690 ORTHO05D009096 4.1e-15 84.3 60 63.3
ClCG05G025030 Citrullus lanatus HOM05D001690 ORTHO05D009096 1.5e-14 82.4 60 65.0
MD16G1087300 Malus domestica HOM05D001690 ORTHO05D009096 1.5e-14 82.4 60 65.0
HPP92_017336 Vanilla planifolia HOM05D001690 ORTHO05D009096 1.5e-14 82.4 68 55.9
Ah.03g132370 Amaranthus hybridus HOM05D000337 ORTHO05D000297 2.0e-14 82.0 60 61.7
EL10Ac6g14125 Beta vulgaris HOM05D001690 ORTHO05D009096 4.5e-14 80.9 60 63.3
Phvul.002G059700 Phaseolus vulgaris HOM05D001690 ORTHO05D009096 1.3e-13 79.3 60 63.3
SEGI_04544 Sequoiadendron giganteum HOM05D001690 ORTHO05D009096 1.7e-13 79.0 58 62.1
CsaV3_5G031860 Cucumis sativus L. HOM05D001690 ORTHO05D009096 2.2e-13 78.6 60 61.7
EL10Ac5g11364 Beta vulgaris HOM05D001690 ORTHO05D009096 3.2e-12 74.7 47 70.2
Sed0019838 Sechium edule HOM05D001690 ORTHO05D009096 4.2e-12 74.3 58 60.3
SMO147G0177 Selaginella moellendorffii HOM05D001690 ORTHO05D009096 4.2e-12 74.3 58 58.6
Pp3c10_1390 Physcomitrium patens HOM05D001690 ORTHO05D009096 3.6e-11 71.2 58 53.4
EL10Ac6g13729 Beta vulgaris HOM05D001690 ORTHO05D009096 1.0e-10 69.7 60 61.7
BcaC05g26305 Brassica carinata HOM05D001690 ORTHO05D009096 2.3e-10 68.6 37 78.4
CBR_g38731 Chara braunii HOM05D001690 ORTHO05D009096 3.3e-09 64.7 60 48.3


User provided reference genes

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