Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030251 Camellia sinensis var. sinensis HOM05D006867 ORTHO05D008676 2.4e-309 1064.7 549 100.0
Actinidia08011 Actinidia chinensis HOM05D006867 ORTHO05D008676 4.7e-220 768.1 545 73.4
Dinv32661 Davidia involucrata HOM05D006867 ORTHO05D008676 3.0e-211 738.8 561 71.1
vmacro08516 Vaccinium macrocarpon HOM05D006867 ORTHO05D008676 5.5e-205 718.0 588 66.3
Rhsim04G0175800 Rhododendron simsii HOM05D006867 ORTHO05D008676 2.3e-195 686.0 576 62.2
Lj9A610G56 Lonicera japonica HOM05D006867 ORTHO05D008676 1.1e-192 677.2 547 64.4
Thecc.01G329400 Theobroma cacao HOM05D006867 ORTHO05D008676 1.2e-186 657.1 550 61.6
COL.COLO4_23081 Corchorus olitorius HOM05D006867 ORTHO05D008676 2.0e-186 656.4 549 63.0
CiPaw.02G046400 Carya illinoinensis HOM05D006867 ORTHO05D008676 3.4e-186 655.6 560 62.5
QL08p048171 Quercus lobata HOM05D006867 ORTHO05D008676 3.4e-186 655.6 553 64.2
Potri.002G183500 Populus trichocarpa HOM05D006867 ORTHO05D008676 9.8e-186 654.1 546 64.8
GSVIVG01027485001 Vitis vinifera HOM05D006867 ORTHO05D008676 2.7e-183 646.0 485 66.8
Sabra14G0080800 Salix brachista HOM05D006867 ORTHO05D008676 4.5e-183 645.2 544 64.2
TAR629G2918 Trochodendron aralioides HOM05D006867 ORTHO05D008676 4.5e-183 645.2 547 62.7
Manes.01G237400 Manihot esculenta HOM05D006867 ORTHO05D008676 1.7e-182 643.3 544 64.9
Atru.chr5.813 Acer truncatum HOM05D006867 ORTHO05D008676 6.6e-182 641.3 545 63.9
Potri.014G109500 Populus trichocarpa HOM05D006867 ORTHO05D008676 8.6e-182 641.0 544 63.4
Cc00_g15760 Coffea canephora HOM05D006867 ORTHO05D008676 1.9e-181 639.8 550 62.9
Sabra02G0132100 Salix brachista HOM05D006867 ORTHO05D008676 8.0e-180 634.4 545 63.3
Gohir.A12G118400 Gossypium hirsutum HOM05D006867 ORTHO05D008676 1.4e-179 633.6 552 62.7
Ciclev10019260m.g Citrus clementina HOM05D006867 ORTHO05D008676 1.8e-179 633.3 544 60.8
Oeu032684.1 Olea europaea HOM05D006867 ORTHO05D008676 6.4e-177 624.8 553 60.2
Gohir.D12G122200 Gossypium hirsutum HOM05D006867 ORTHO05D008676 4.1e-176 622.1 552 61.2
Gorai.008G133000 Gossypium raimondii HOM05D006867 ORTHO05D008676 1.2e-175 620.5 552 61.2
Haze_15774 Corylus avellana HOM05D006867 ORTHO05D008676 7.8e-175 617.8 546 59.5
Hma1.2p1_0074F.1_g039020 Hydrangea macrophylla HOM05D006867 ORTHO05D008676 8.6e-174 614.4 457 67.2
CANSAT56G0208 Cannabis sativa HOM05D006867 ORTHO05D008676 7.3e-173 611.3 549 58.3
CANSAT56G2490 Cannabis sativa HOM05D006867 ORTHO05D008676 1.8e-171 606.7 549 57.9
MBI11_g13783_MAGBIO Magnolia biondii HOM05D006867 ORTHO05D008676 1.8e-171 606.7 549 58.3
Nitab4.5_0004754g0040 Nicotiana tabacum HOM05D006867 ORTHO05D008676 2.3e-171 606.3 541 57.1
Cfa003709 Carpinus fangiana HOM05D006867 ORTHO05D008676 6.8e-171 604.7 554 60.1
MD07G1165200 Malus domestica HOM05D006867 ORTHO05D008676 6.8e-171 604.7 546 58.8
arahy.Tifrunner.gnm1.ann1.L7530T Arachis hypogaea HOM05D006867 ORTHO05D008676 7.5e-170 601.3 553 58.2
arahy.Tifrunner.gnm1.ann1.Y7T28V Arachis hypogaea HOM05D006867 ORTHO05D008676 2.2e-169 599.7 553 58.0
Aqoxy5G04385 Aquilegia oxysepala HOM05D006867 ORTHO05D008676 3.2e-168 595.9 503 60.8
Prupe.2G203900 Prunus persica HOM05D006867 ORTHO05D008676 5.4e-168 595.1 545 58.9
Lalb_Chr17g0343131 Lupinus albus HOM05D006867 ORTHO05D008676 7.0e-168 594.7 546 58.6
Nitab4.5_0000348g0180 Nicotiana tabacum HOM05D006867 ORTHO05D008676 1.3e-166 590.5 544 58.1
THA.LOC104817409 Tarenaya hassleriana HOM05D006867 ORTHO05D008676 1.3e-166 590.5 552 57.4
EL10Ac9g22256 Beta vulgaris HOM05D006867 ORTHO05D008676 8.6e-166 587.8 549 56.6
CAN.G90.6 Capsicum annuum HOM05D006867 ORTHO05D008676 2.8e-164 582.8 547 56.1
Lalb_Chr10g0101011 Lupinus albus HOM05D006867 ORTHO05D008676 2.8e-164 582.8 535 60.0
Sed0008932 Sechium edule HOM05D006867 ORTHO05D008676 2.8e-164 582.8 546 57.1
Glyma.16G015800 Glycine max HOM05D006867 ORTHO05D008676 8.1e-164 581.3 544 59.0
Migut.I01214 Erythranthe guttata HOM05D006867 ORTHO05D008676 1.8e-163 580.1 562 56.4
Sopen08g006420 Solanum pennellii HOM05D006867 ORTHO05D008676 5.2e-163 578.6 531 56.3
CsaV3_3G007140 Cucumis sativus L. HOM05D006867 ORTHO05D008676 5.8e-162 575.1 555 55.7
Lj3g0022605 Lotus japonicus HOM05D006867 ORTHO05D008676 7.5e-162 574.7 544 58.3
MD01G1098500 Malus domestica HOM05D006867 ORTHO05D008676 7.5e-162 574.7 544 57.0
VMungo0331G1883 Vigna mungo HOM05D006867 ORTHO05D008676 9.9e-162 574.3 547 59.6
Phvul.010G121700 Phaseolus vulgaris HOM05D006867 ORTHO05D008676 2.2e-161 573.2 548 58.6
Glyma.07G047300 Glycine max HOM05D006867 ORTHO05D008676 5.4e-160 568.5 546 57.9
ClCG05G000080 Citrullus lanatus HOM05D006867 ORTHO05D008676 2.7e-159 566.2 492 58.9
PSO782G1247 Papaver somniferum HOM05D006867 ORTHO05D008676 1.7e-158 563.5 543 56.7
Ah.01g010880 Amaranthus hybridus HOM05D006867 ORTHO05D008676 5.1e-158 562.0 546 54.6
Psat0s2980g0160 Pisum sativum HOM05D006867 ORTHO05D008676 1.1e-157 560.8 548 56.9
Hund00158 Selenicereus undatus HOM05D006867 ORTHO05D008676 1.5e-157 560.5 546 53.3
HanXRQChr17g0542101 Helianthus annuus HOM05D006867 ORTHO05D008676 1.9e-157 560.1 544 55.9
HanXRQChr15g0480381 Helianthus annuus HOM05D006867 ORTHO05D008676 1.6e-156 557.0 543 55.6
RcHm_v2.0_Chr1g0361851 Rosa chinensis HOM05D006867 ORTHO05D008676 2.1e-156 556.6 548 56.2
Sc08g0001320 Simmondsia chinensis HOM05D006867 ORTHO05D008676 2.1e-156 556.6 544 54.0
TPR.G32787 Trifolium pratense HOM05D006867 ORTHO05D008676 2.8e-156 556.2 546 56.6
Sp4g28920 Schrenkiella parvula HOM05D006867 ORTHO05D008676 6.2e-156 555.1 552 55.3
Medtr8g023750 Medicago truncatula HOM05D006867 ORTHO05D008676 8.1e-156 554.7 554 57.4
AUR62010330 Chenopodium quinoa HOM05D006867 ORTHO05D008676 1.1e-155 554.3 548 53.6
Ca_23461_v3 Cicer arietinum L. HOM05D006867 ORTHO05D008676 1.4e-155 553.9 549 57.6
Ca_23474_v3 Cicer arietinum L. HOM05D006867 ORTHO05D008676 1.4e-155 553.9 549 57.6
Lsat_1_v5_gn_3_39660 Lactuca sativa HOM05D006867 ORTHO05D008676 3.1e-155 552.7 554 55.6
FAN06G0390 Fragaria x ananassa HOM05D006867 ORTHO05D008676 2.0e-154 550.1 547 54.1
SalBow6G1414 Salvia bowleyana HOM05D006867 ORTHO05D008676 4.4e-154 548.9 555 53.7
Aa31LG1G28260 Aethionema arabicum HOM05D006867 ORTHO05D008676 5.8e-154 548.5 514 55.8
MSTRG.10869 Avicennia marina HOM05D006867 ORTHO05D008676 5.8e-154 548.5 569 52.4
AUR62039056 Chenopodium quinoa HOM05D006867 ORTHO05D008676 9.9e-154 547.7 548 52.9
FvH4_7g18270 Fragaria vesca HOM05D006867 ORTHO05D008676 1.7e-153 547.0 543 55.4
FAN06G3784 Fragaria x ananassa HOM05D006867 ORTHO05D008676 2.9e-153 546.2 543 55.4
ATR0824G236 Amborella trichopoda HOM05D006867 ORTHO05D008676 4.9e-153 545.4 550 53.3
Eucgr.L00743 Eucalyptus grandis HOM05D006867 ORTHO05D008676 6.4e-153 545.0 550 56.2
Thhalv10001357m.g Eutrema salsugineum HOM05D006867 ORTHO05D008676 4.2e-152 542.3 558 56.1
AL4G46360 Arabidopsis lyrata HOM05D006867 ORTHO05D008676 1.6e-151 540.4 550 55.1
FAN10G3600 Fragaria x ananassa HOM05D006867 ORTHO05D008676 2.7e-151 539.7 550 54.5
FAN10G4369 Fragaria x ananassa HOM05D006867 ORTHO05D008676 5.1e-150 535.4 547 54.3
CARHR142250 Cardamine hirsuta HOM05D006867 ORTHO05D008676 1.1e-149 534.3 548 55.3
FAN01G1143 Fragaria x ananassa HOM05D006867 ORTHO05D008676 1.1e-149 534.3 543 54.3
FAN03G0961 Fragaria x ananassa HOM05D006867 ORTHO05D008676 1.1e-149 534.3 543 54.3
TWI59G0124 Tripterygium wilfordii HOM05D006867 ORTHO05D008676 1.1e-149 534.3 555 52.3
HPP92_013529 Vanilla planifolia HOM05D006867 ORTHO05D008676 6.2e-148 528.5 546 50.7
Carub.0004s2962 Capsella rubella HOM05D006867 ORTHO05D008676 2.4e-147 526.6 547 54.8
SGA_v2.0_scaffold122G33256 Striga asiatica HOM05D006867 ORTHO05D008676 9.0e-147 524.6 495 57.0
AT2G46900 Arabidopsis thaliana HOM05D006867 ORTHO05D008676 1.2e-143 514.2 536 54.1
A05p00940 Brassica napus HOM05D006867 ORTHO05D008676 4.8e-140 502.3 552 53.4
BolC4t21761H Brassica oleracea HOM05D006867 ORTHO05D008676 1.1e-139 501.1 555 53.3
DCAR_022120 Daucus carota HOM05D006867 ORTHO05D008676 1.8e-139 500.4 548 51.5
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 1.2e-138 497.7 433 57.5
Os09g0514900 Oryza sativa ssp. japonica HOM05D006867 ORTHO05D008676 4.9e-137 492.3 549 49.7
Zm00001eb102740 Zea mays HOM05D006867 ORTHO05D008676 4.9e-137 492.3 546 49.3
ECA246G2438 Erigeron canadensis HOM05D006867 ORTHO05D008676 1.9e-136 490.3 547 51.2
FAN01G0521 Fragaria x ananassa HOM05D006867 ORTHO05D008676 3.9e-134 482.6 368 60.9
Peaxi162Scf01205g00180 Petunia axillaris HOM05D006867 ORTHO05D008676 4.3e-117 426.0 283 68.2
BcaC02g12633 Brassica carinata HOM05D006867 ORTHO05D008676 3.9e-110 402.9 552 46.7
CDE09G1372 Ceratophyllum demersum HOM05D006867 ORTHO05D008676 1.1e-107 394.8 466 45.5
Cpa.g.sc1043.2 Carica papaya HOM05D006867 ORTHO05D008676 2.0e-106 390.6 258 69.4
Pp3c11_2510 Physcomitrium patens HOM05D006867 ORTHO05D008676 1.1e-101 374.8 555 39.6
AagrBONN_evm.TU.Sc2ySwM_344.4360 Anthoceros agrestis HOM05D006867 ORTHO05D008676 2.6e-101 373.6 555 40.2
Pp3c1_12740 Physcomitrium patens HOM05D006867 ORTHO05D008676 3.1e-99 366.7 385 48.1
SMO331G0055 Selaginella moellendorffii HOM05D006867 ORTHO05D008676 1.5e-98 364.4 360 50.3
Mapoly0002s0219 Marchantia polymorpha HOM05D006867 ORTHO05D008676 7.2e-96 355.5 369 50.7
MELO3C005936.2 Cucumis melo HOM05D006867 ORTHO05D008676 2.6e-93 347.1 257 62.6
Cre11.g467639 Chlamydomonas reinhardtii HOM05D006867 ORTHO05D008676 1.8e-67 261.2 411 37.0
CBR_g36359 Chara braunii HOM05D006867 ORTHO05D008676 2.3e-62 244.2 548 29.0
PRCOL_00004033 Prasinoderma coloniale HOM05D006867 ORTHO05D008676 1.7e-52 211.5 450 31.6
MCO10G037 Micromonas commoda HOM05D006867 ORTHO05D008676 3.0e-41 174.1 445 25.4
Solyc08g016090.4 Solanum lycopersicum HOM05D006867 ORTHO05D008676 4.9e-36 156.8 105 66.7
C04p72500 Brassica napus HOM05D006867 ORTHO05D008676 7.3e-24 116.3 98 57.1
BolC4t28738H Brassica oleracea HOM05D006867 ORTHO05D008676 7.3e-24 116.3 98 57.1
A04p34720 Brassica napus HOM05D006867 ORTHO05D008676 4.0e-22 110.5 98 55.1
Cfa022788 Carpinus fangiana HOM05D006867 ORTHO05D008676 1.3e-15 89.0 387 23.8


User provided reference genes

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