Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030250 Camellia sinensis var. sinensis HOM05D007512 ORTHO05D009524 5.5e-107 391.0 195 100.0
CSS0045166 Camellia sinensis var. sinensis HOM05D007512 ORTHO05D009524 1.7e-92 342.8 195 91.3
Rhsim12G0013200 Rhododendron simsii HOM05D007512 ORTHO05D009524 1.0e-76 290.4 191 74.9
GSVIVG01020824001 Vitis vinifera HOM05D007512 ORTHO05D009524 2.0e-69 266.2 187 69.0
Cfa005459 Carpinus fangiana HOM05D007512 ORTHO05D009524 5.6e-67 258.1 193 68.9
LjContig00049g0018887 Lotus japonicus HOM05D007512 ORTHO05D009524 5.6e-67 258.1 192 65.6
Haze_01852 Corylus avellana HOM05D007512 ORTHO05D009524 7.3e-67 257.7 193 69.9
RcHm_v2.0_Chr2g0152451 Rosa chinensis HOM05D007512 ORTHO05D009524 1.6e-66 256.5 190 68.4
Nn7g38060 Nelumbo nucifera HOM05D007512 ORTHO05D009524 2.1e-66 256.1 195 67.7
Manes.12G132100 Manihot esculenta HOM05D007512 ORTHO05D009524 6.1e-66 254.6 186 66.7
QL08p045474 Quercus lobata HOM05D007512 ORTHO05D009524 1.4e-65 253.4 182 69.2
Potri.002G056400 Populus trichocarpa HOM05D007512 ORTHO05D009524 1.8e-65 253.1 188 66.5
Sabra02G0045700 Salix brachista HOM05D007512 ORTHO05D009524 1.8e-65 253.1 183 67.8
Lj1C588G3 Lonicera japonica HOM05D007512 ORTHO05D009524 2.3e-65 252.7 185 68.1
CAN.G946.8 Capsicum annuum HOM05D007512 ORTHO05D009524 5.2e-65 251.5 193 62.2
CiPaw.09G218400 Carya illinoinensis HOM05D007512 ORTHO05D009524 6.8e-65 251.1 191 66.0
Nn7g38052 Nelumbo nucifera HOM05D007512 ORTHO05D009524 8.9e-65 250.8 186 67.2
Prupe.3G178900 Prunus persica HOM05D007512 ORTHO05D009524 3.4e-64 248.8 196 62.8
Peaxi162Scf00359g00113 Petunia axillaris HOM05D007512 ORTHO05D009524 7.5e-64 247.7 188 64.4
Migut.J01325 Erythranthe guttata HOM05D007512 ORTHO05D009524 2.2e-63 246.1 190 64.7
TAR626G1484 Trochodendron aralioides HOM05D007512 ORTHO05D009524 4.9e-63 245.0 191 63.9
Glyma.02G283200 Glycine max HOM05D007512 ORTHO05D009524 6.4e-63 244.6 185 66.5
Nitab4.5_0001552g0120 Nicotiana tabacum HOM05D007512 ORTHO05D009524 6.4e-63 244.6 185 62.2
arahy.Tifrunner.gnm1.ann1.EFEG4J Arachis hypogaea HOM05D007512 ORTHO05D009524 2.4e-62 242.7 192 62.5
ECA246G3016 Erigeron canadensis HOM05D007512 ORTHO05D009524 7.0e-62 241.1 195 62.6
Nitab4.5_0007814g0010 Nicotiana tabacum HOM05D007512 ORTHO05D009524 7.0e-62 241.1 184 62.0
ClCG11G016580 Citrullus lanatus HOM05D007512 ORTHO05D009524 9.2e-62 240.7 190 63.2
Thecc.01G167000 Theobroma cacao HOM05D007512 ORTHO05D009524 2.0e-61 239.6 191 62.3
Cpa.g.sc53.33 Carica papaya HOM05D007512 ORTHO05D009524 2.7e-61 239.2 183 63.9
Gohir.A11G061700 Gossypium hirsutum HOM05D007512 ORTHO05D009524 2.7e-61 239.2 186 62.9
MBI18_g45404_MAGBIO Magnolia biondii HOM05D007512 ORTHO05D009524 2.7e-61 239.2 186 62.4
Gorai.007G071100 Gossypium raimondii HOM05D007512 ORTHO05D009524 3.5e-61 238.8 186 62.9
CsaV3_4G032050 Cucumis sativus L. HOM05D007512 ORTHO05D009524 4.6e-61 238.4 190 61.6
FvH4_6g38852 Fragaria vesca HOM05D007512 ORTHO05D009524 4.6e-61 238.4 180 65.6
VMungo0647G1345 Vigna mungo HOM05D007512 ORTHO05D009524 4.6e-61 238.4 183 64.5
Ciclev10032522m.g Citrus clementina HOM05D007512 ORTHO05D009524 5.9e-61 238.0 202 60.9
Solyc07g044970.1 Solanum lycopersicum HOM05D007512 ORTHO05D009524 1.3e-60 236.9 196 60.7
Duzib147G0049 Durio zibethinus HOM05D007512 ORTHO05D009524 1.7e-60 236.5 188 63.8
Sopen07g023500 Solanum pennellii HOM05D007512 ORTHO05D009524 1.7e-60 236.5 196 61.2
MELO3C022965.2 Cucumis melo HOM05D007512 ORTHO05D009524 2.3e-60 236.1 190 61.1
Psat2g017680 Pisum sativum HOM05D007512 ORTHO05D009524 3.0e-60 235.7 184 64.1
Dinv27197 Davidia involucrata HOM05D007512 ORTHO05D009524 3.9e-60 235.3 168 70.8
PGSC0003DMG400045865 Solanum tuberosum HOM05D007512 ORTHO05D009524 3.9e-60 235.3 196 60.2
PGSC0003DMG402000923 Solanum tuberosum HOM05D007512 ORTHO05D009524 3.9e-60 235.3 196 60.2
Sc23g0003420 Simmondsia chinensis HOM05D007512 ORTHO05D009524 5.0e-60 235.0 183 63.4
TWI14G0908 Tripterygium wilfordii HOM05D007512 ORTHO05D009524 5.0e-60 235.0 194 59.8
Lalb_Chr11g0069491 Lupinus albus HOM05D007512 ORTHO05D009524 6.6e-60 234.6 188 61.7
Gohir.D11G065600 Gossypium hirsutum HOM05D007512 ORTHO05D009524 1.1e-59 233.8 186 62.4
Phvul.008G196000 Phaseolus vulgaris HOM05D007512 ORTHO05D009524 1.5e-59 233.4 182 63.7
HanXRQChr05g0157121 Helianthus annuus HOM05D007512 ORTHO05D009524 2.5e-59 232.6 189 64.0
Aqoxy1G01494 Aquilegia oxysepala HOM05D007512 ORTHO05D009524 7.3e-59 231.1 186 60.2
Oeu021245.2 Olea europaea HOM05D007512 ORTHO05D009524 9.5e-59 230.7 183 62.8
Sed0022455 Sechium edule HOM05D007512 ORTHO05D009524 1.2e-58 230.3 188 59.6
COL.COLO4_29884 Corchorus olitorius HOM05D007512 ORTHO05D009524 5.2e-57 224.9 191 60.7
Gohir.D11G065833 Gossypium hirsutum HOM05D007512 ORTHO05D009524 6.8e-57 224.6 169 63.3
Ca_06252_v3 Cicer arietinum L. HOM05D007512 ORTHO05D009524 2.0e-56 223.0 178 63.5
Gohir.A11G061633 Gossypium hirsutum HOM05D007512 ORTHO05D009524 2.6e-56 222.6 186 59.1
Eucgr.A02034 Eucalyptus grandis HOM05D007512 ORTHO05D009524 5.8e-56 221.5 171 64.3
TPR.G8778 Trifolium pratense HOM05D007512 ORTHO05D009524 5.8e-56 221.5 177 60.5
SGA_v2.0_scaffold45G17047 Striga asiatica HOM05D007512 ORTHO05D009524 1.3e-55 220.3 196 59.2
AUR62004262 Chenopodium quinoa HOM05D007512 ORTHO05D009524 2.2e-55 219.5 190 56.8
Medtr5g090740 Medicago truncatula HOM05D007512 ORTHO05D009524 3.7e-55 218.8 179 58.7
HPP92_026664 Vanilla planifolia HOM05D007512 ORTHO05D009524 5.4e-54 214.9 187 58.3
MBI18_g43440_MAGBIO Magnolia biondii HOM05D007512 ORTHO05D009524 7.0e-54 214.5 186 58.1
AUR62042750 Chenopodium quinoa HOM05D007512 ORTHO05D009524 7.8e-53 211.1 181 57.5
ATR0763G176 Amborella trichopoda HOM05D007512 ORTHO05D009524 6.6e-52 208.0 196 52.6
Ah.05g175540 Amaranthus hybridus HOM05D007512 ORTHO05D009524 1.5e-51 206.8 183 56.3
Zm00001eb300410 Zea mays HOM05D007512 ORTHO05D009524 1.5e-51 206.8 186 57.0
unitig_747.g21446 Utricularia gibba HOM05D007512 ORTHO05D009524 1.9e-51 206.5 178 55.6
Os07g0160300 Oryza sativa ssp. japonica HOM05D007512 ORTHO05D009524 1.2e-50 203.8 194 54.1
CAN.G358.11 Capsicum annuum HOM05D007512 ORTHO05D009524 4.4e-48 195.3 184 57.1
SEGI_32907 Sequoiadendron giganteum HOM05D007512 ORTHO05D009524 3.6e-42 175.6 161 56.5
AagrBONN_evm.TU.Sc2ySwM_368.3309 Anthoceros agrestis HOM05D007512 ORTHO05D009524 6.2e-42 174.9 196 48.0
Lsat_1_v5_gn_5_21320 Lactuca sativa HOM05D007512 ORTHO05D009524 7.6e-40 167.9 183 50.3
Actinidia18710 Actinidia chinensis HOM05D007512 ORTHO05D009524 4.6e-37 158.7 200 42.0
Mapoly0032s0087 Marchantia polymorpha HOM05D007512 ORTHO05D009524 3.0e-36 156.0 225 40.9
Actinidia25705 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.2e-34 150.6 169 51.5
Actinidia25706 Actinidia chinensis HOM05D007512 ORTHO05D009524 2.2e-31 139.8 178 47.8
Nitab4.5_0000241g0240 Nicotiana tabacum HOM05D007512 ORTHO05D009524 2.2e-31 139.8 185 45.9
Pp3c26_9780 Physcomitrium patens HOM05D007512 ORTHO05D009524 5.4e-30 135.2 265 30.6
PGR142G3775 Punica granatum HOM05D007512 ORTHO05D009524 1.2e-29 134.0 191 41.4
Actinidia24467 Actinidia chinensis HOM05D007512 ORTHO05D009524 6.6e-28 128.3 127 51.2
Actinidia24468 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.5e-27 127.1 176 44.9
Atru.chr6.2019 Acer truncatum HOM05D007512 ORTHO05D009524 1.6e-26 123.6 89 65.2
Actinidia02491 Actinidia chinensis HOM05D007512 ORTHO05D009524 3.6e-26 122.5 186 40.3
Actinidia40448 Actinidia chinensis HOM05D007512 ORTHO05D009524 4.8e-26 122.1 181 44.2
Actinidia02493 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.1e-25 120.9 182 43.4
Actinidia18709 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.8e-25 120.2 190 37.9
CSS0013803 Camellia sinensis var. sinensis HOM05D007512 ORTHO05D009524 3.1e-25 119.4 216 36.1
Pp3c3_10350 Physcomitrium patens HOM05D007512 ORTHO05D009524 5.3e-25 118.6 140 45.0
SMO367G0698 Selaginella moellendorffii HOM05D007512 ORTHO05D009524 1.2e-24 117.5 208 35.1
Actinidia22804 Actinidia chinensis HOM05D007512 ORTHO05D009524 2.6e-24 116.3 193 36.3
TWI36G1125 Tripterygium wilfordii HOM05D007512 ORTHO05D009524 2.1e-21 106.7 171 35.7
FAN14G4311 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.6e-19 98.6 119 49.6
FvH4_6g38850 Fragaria vesca HOM05D000876 ORTHO05D000285 9.6e-19 97.8 88 60.2
Ca_06242_v3 Cicer arietinum L. HOM05D007512 ORTHO05D009524 1.2e-16 90.9 98 50.0
Sabra01G0030800 Salix brachista HOM05D007512 ORTHO05D009524 3.8e-15 85.9 179 31.8
CSS0000822 Camellia sinensis var. sinensis HOM05D000125 ORTHO05D009524 7.1e-14 81.6 125 39.2
Actinidia14260 Actinidia chinensis HOM05D007512 ORTHO05D009524 6.0e-13 78.6 172 33.7
Duzib177G0331 Durio zibethinus HOM05D000125 ORTHO05D020513 2.3e-12 76.6 122 36.1
Sabra09G0120600 Salix brachista HOM05D000125 ORTHO05D020513 4.8e-10 68.9 116 32.8
Actinidia09356 Actinidia chinensis HOM05D007512 ORTHO05D009524 3.1e-09 66.2 87 41.4
COL.COLO4_13576 Corchorus olitorius HOM05D007512 ORTHO05D020513 5.8e-08 62.0 110 37.3
Manes.10G123525 Manihot esculenta HOM05D007512 ORTHO05D020513 5.8e-08 62.0 113 31.0
Potri.001G044601 Populus trichocarpa HOM05D007512 ORTHO05D009524 1.4e-06 57.4 120 28.3
Gohir.A04G031400 Gossypium hirsutum HOM05D000125 ORTHO05D020513 2.5e-06 56.6 127 33.1


User provided reference genes

Program Settings