Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030244 Camellia sinensis var. sinensis HOM05D006758 ORTHO05D008326 9.7e-45 183.0 83 100.0
Glyma.10G251800 Glycine max HOM05D006758 ORTHO05D008326 1.0e-41 172.9 81 96.3
Glyma.20G141700 Glycine max HOM05D006758 ORTHO05D008326 1.0e-41 172.9 81 96.3
Phvul.007G052700 Phaseolus vulgaris HOM05D006758 ORTHO05D008326 1.0e-41 172.9 81 96.3
arahy.Tifrunner.gnm1.ann1.ND4ZK6 Arachis hypogaea HOM05D006758 ORTHO05D008326 3.8e-41 171.0 81 95.1
EL10Ac8g19995 Beta vulgaris HOM05D006758 ORTHO05D008326 1.1e-40 169.5 81 93.8
PGR004G2441 Punica granatum HOM05D006758 ORTHO05D008326 1.4e-40 169.1 81 93.8
Ca_10997_v3 Cicer arietinum L. HOM05D006758 ORTHO05D008326 1.9e-40 168.7 81 92.6
Hma1.2p1_2714F.1_g327410 Hydrangea macrophylla HOM05D006758 ORTHO05D008326 2.5e-40 168.3 81 92.6
Hma1.2p1_2726F.1_g327620 Hydrangea macrophylla HOM05D006758 ORTHO05D008326 2.5e-40 168.3 81 92.6
THA.LOC104809516 Tarenaya hassleriana HOM05D006758 ORTHO05D008326 2.5e-40 168.3 81 93.8
Dinv20021 Davidia involucrata HOM05D006758 ORTHO05D008326 3.2e-40 167.9 81 92.6
Manes.17G035700 Manihot esculenta HOM05D006758 ORTHO05D008326 3.2e-40 167.9 81 92.6
TAR624G0544 Trochodendron aralioides HOM05D006758 ORTHO05D008326 3.2e-40 167.9 81 92.6
TAR626G1807 Trochodendron aralioides HOM05D006758 ORTHO05D008326 3.2e-40 167.9 81 92.6
Nitab4.5_0002347g0160 Nicotiana tabacum HOM05D006758 ORTHO05D008326 4.2e-40 167.5 81 92.6
Nitab4.5_0008530g0010 Nicotiana tabacum HOM05D006758 ORTHO05D008326 4.2e-40 167.5 81 92.6
CAN.G569.41 Capsicum annuum HOM05D006758 ORTHO05D008326 5.5e-40 167.2 81 91.4
Solyc02g080140.4 Solanum lycopersicum HOM05D006758 ORTHO05D008326 5.5e-40 167.2 81 91.4
Sopen02g024850 Solanum pennellii HOM05D006758 ORTHO05D008326 5.5e-40 167.2 81 91.4
Eucgr.D01293 Eucalyptus grandis HOM05D006758 ORTHO05D008326 7.2e-40 166.8 81 92.6
PSO210G7269 Papaver somniferum HOM05D006758 ORTHO05D008326 7.2e-40 166.8 81 92.6
PSO832G0089 Papaver somniferum HOM05D006758 ORTHO05D008326 7.2e-40 166.8 81 92.6
GSVIVG01012634001 Vitis vinifera HOM05D006758 ORTHO05D008326 7.2e-40 166.8 81 91.4
CiPaw.09G087600 Carya illinoinensis HOM05D006758 ORTHO05D008326 9.4e-40 166.4 81 91.4
Ciclev10017296m.g Citrus clementina HOM05D006758 ORTHO05D008326 9.4e-40 166.4 81 91.4
Lj5g0020351 Lotus japonicus HOM05D006758 ORTHO05D008326 9.4e-40 166.4 81 91.4
Rhsim02G0111700 Rhododendron simsii HOM05D006758 ORTHO05D008326 9.4e-40 166.4 81 92.6
TPR.G5478 Trifolium pratense HOM05D006758 ORTHO05D008326 9.4e-40 166.4 81 91.4
Duzib235G1228 Durio zibethinus HOM05D006758 ORTHO05D008326 1.2e-39 166.0 81 91.4
Lalb_Chr06g0164881 Lupinus albus HOM05D006758 ORTHO05D008326 1.2e-39 166.0 81 92.6
Potri.004G021200 Populus trichocarpa HOM05D006758 ORTHO05D008326 1.2e-39 166.0 81 91.4
Gohir.A06G207900 Gossypium hirsutum HOM05D006758 ORTHO05D008326 1.6e-39 165.6 81 90.1
Gorai.010G252900 Gossypium raimondii HOM05D006758 ORTHO05D008326 1.6e-39 165.6 81 90.1
Sabra04G0011700 Salix brachista HOM05D006758 ORTHO05D008326 1.6e-39 165.6 81 91.4
Nn1g03624 Nelumbo nucifera HOM05D006758 ORTHO05D008326 2.1e-39 165.2 81 91.4
Prupe.4G025700 Prunus persica HOM05D006758 ORTHO05D008326 2.1e-39 165.2 81 91.4
SGA_v2.0_scaffold7G03879 Striga asiatica HOM05D006758 ORTHO05D008326 2.7e-39 164.9 81 91.4
CANSAT56G2354 Cannabis sativa HOM05D006758 ORTHO05D008326 3.6e-39 164.5 81 90.1
COL.COLO4_31733 Corchorus olitorius HOM05D006758 ORTHO05D008326 3.6e-39 164.5 81 90.1
Sed0024295 Sechium edule HOM05D006758 ORTHO05D008326 3.6e-39 164.5 81 91.4
CDE05G3555 Ceratophyllum demersum HOM05D006758 ORTHO05D008326 4.6e-39 164.1 81 91.4
AUR62022003 Chenopodium quinoa HOM05D006758 ORTHO05D008326 4.6e-39 164.1 81 91.4
DCAR_008127 Daucus carota HOM05D006758 ORTHO05D008326 4.6e-39 164.1 81 91.4
MD05G1341600 Malus domestica HOM05D006758 ORTHO05D008326 4.6e-39 164.1 81 90.1
Os08g0190800 Oryza sativa ssp. japonica HOM05D006758 ORTHO05D008326 4.6e-39 164.1 81 91.4
Duzib192G0534 Durio zibethinus HOM05D006758 ORTHO05D008326 6.1e-39 163.7 81 88.9
Thecc.06G214600 Theobroma cacao HOM05D006758 ORTHO05D008326 6.1e-39 163.7 81 88.9
Zm00001eb413280 Zea mays HOM05D006758 ORTHO05D008326 6.1e-39 163.7 81 91.4
Ah.09g235270 Amaranthus hybridus HOM05D006758 ORTHO05D008326 7.9e-39 163.3 81 91.4
MELO3C007373.2 Cucumis melo HOM05D006758 ORTHO05D008326 1.0e-38 162.9 81 90.1
CsaV3_6G049220 Cucumis sativus L. HOM05D006758 ORTHO05D008326 1.0e-38 162.9 81 90.1
Psat0s2691g0120 Pisum sativum HOM05D006758 ORTHO05D008326 1.0e-38 162.9 81 88.9
arahy.Tifrunner.gnm1.ann1.GJ8XD1 Arachis hypogaea HOM05D006758 ORTHO05D008326 1.4e-38 162.5 92 83.7
Migut.M01286 Erythranthe guttata HOM05D006758 ORTHO05D008326 1.4e-38 162.5 81 90.1
Gohir.A09G069700 Gossypium hirsutum HOM05D006758 ORTHO05D008326 1.8e-38 162.2 81 88.9
Gohir.D09G069600 Gossypium hirsutum HOM05D006758 ORTHO05D008326 1.8e-38 162.2 81 88.9
Lsat_1_v5_gn_4_59120 Lactuca sativa HOM05D006758 ORTHO05D008326 1.8e-38 162.2 81 90.1
MD10G1315000 Malus domestica HOM05D006758 ORTHO05D008326 2.3e-38 161.8 81 87.7
Oeu037351.1 Olea europaea HOM05D006758 ORTHO05D008326 2.3e-38 161.8 81 88.9
RcHm_v2.0_Chr5g0003931 Rosa chinensis HOM05D006758 ORTHO05D008326 3.0e-38 161.4 84 89.3
TWI38G0518 Tripterygium wilfordii HOM05D006758 ORTHO05D008326 3.0e-38 161.4 81 90.1
ATR0661G232 Amborella trichopoda HOM05D006758 ORTHO05D008326 6.7e-38 160.2 81 86.4
BcaB07g31284 Brassica carinata HOM05D006758 ORTHO05D008326 1.1e-37 159.5 83 88.0
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 1.1e-37 159.5 83 88.0
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 1.1e-37 159.5 83 88.0
CARHR050560 Cardamine hirsuta HOM05D006758 ORTHO05D008326 1.1e-37 159.5 83 88.0
Cc02_g11670 Coffea canephora HOM05D006758 ORTHO05D008326 1.1e-37 159.5 85 87.1
FvH4_3g02640 Fragaria vesca HOM05D006758 ORTHO05D008326 1.1e-37 159.5 84 88.1
Pp3c2_14210 Physcomitrium patens HOM05D006758 ORTHO05D008326 1.1e-37 159.5 81 88.9
Mapoly0102s0010 Marchantia polymorpha HOM05D006758 ORTHO05D008326 1.5e-37 159.1 81 87.7
ECA234G0861 Erigeron canadensis HOM05D006758 ORTHO05D008326 2.0e-37 158.7 81 87.7
Actinidia11840 Actinidia chinensis HOM05D006758 ORTHO05D008326 2.5e-37 158.3 81 88.9
DCAR_004197 Daucus carota HOM05D006758 ORTHO05D008326 3.3e-37 157.9 83 86.7
HanXRQChr16g0515881 Helianthus annuus HOM05D006758 ORTHO05D008326 3.3e-37 157.9 81 87.7
BcaC04g22349 Brassica carinata HOM05D006758 ORTHO05D008326 5.7e-37 157.1 83 86.7
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 5.7e-37 157.1 83 86.7
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 5.7e-37 157.1 83 86.7
Carub.0002s0329 Capsella rubella HOM05D006758 ORTHO05D008326 5.7e-37 157.1 83 86.7
Thhalv10023778m.g Eutrema salsugineum HOM05D006758 ORTHO05D008326 5.7e-37 157.1 83 86.7
Sabra11G0016800 Salix brachista HOM05D006758 ORTHO05D008326 1.3e-36 156.0 81 86.4
Sp2g02770 Schrenkiella parvula HOM05D006758 ORTHO05D008326 1.3e-36 156.0 83 85.5
Aa31LG1G3210 Aethionema arabicum HOM05D006758 ORTHO05D008326 1.7e-36 155.6 83 85.5
AagrBONN_evm.TU.Sc2ySwM_344.4905 Anthoceros agrestis HOM05D006758 ORTHO05D008326 3.7e-36 154.5 81 84.0
BcaB04g20373 Brassica carinata HOM05D006758 ORTHO05D008326 3.7e-36 154.5 83 84.3
ClCG01G022160 Citrullus lanatus HOM05D006758 ORTHO05D008326 3.7e-36 154.5 85 85.9
Dinv17829 Davidia involucrata HOM05D006758 ORTHO05D008326 4.8e-36 154.1 75 92.0
AL2G14330 Arabidopsis lyrata HOM05D006758 ORTHO05D008326 8.2e-36 153.3 83 84.3
AT1G61780 Arabidopsis thaliana HOM05D006758 ORTHO05D008326 8.2e-36 153.3 83 84.3
unitig_61.g26114 Utricularia gibba HOM05D006758 ORTHO05D008326 4.1e-35 151.0 107 69.2
SHI02162 Sapria himalayana HOM05D006758 ORTHO05D008326 6.9e-35 150.2 79 86.1
Oeu051222.1 Olea europaea HOM05D006758 ORTHO05D008326 1.5e-34 149.1 75 88.0
Gorai.006G083800 Gossypium raimondii HOM05D006758 ORTHO05D008326 2.6e-34 148.3 75 88.0
Sc17g0007080 Simmondsia chinensis HOM05D006758 ORTHO05D008326 2.6e-34 148.3 75 89.3
CBR_g45280 Chara braunii HOM05D006758 ORTHO05D008326 3.0e-30 134.8 77 77.9
SMO351G0293 Selaginella moellendorffii HOM05D006758 ORTHO05D008326 5.1e-30 134.0 74 78.4
Peaxi162Scf00082g10217 Petunia axillaris HOM05D006758 ORTHO05D008326 9.7e-29 129.8 83 77.1
Hund23506 Selenicereus undatus HOM05D006758 ORTHO05D008326 5.0e-25 117.5 62 87.1
MCO09G771 Micromonas commoda HOM05D006758 ORTHO05D008326 2.3e-22 108.6 85 57.6
Cre16.g670200 Chlamydomonas reinhardtii HOM05D006758 ORTHO05D008326 2.0e-18 95.5 82 52.4
QL05p074940 Quercus lobata HOM05D006758 ORTHO05D008326 1.0e-17 93.2 46 95.7
QL93p0073_0472 Quercus lobata HOM05D006758 ORTHO05D008326 1.0e-17 93.2 46 95.7
Haze_06744 Corylus avellana HOM05D006758 ORTHO05D008326 2.9e-17 91.7 68 70.6
Ah.14g088140 Amaranthus hybridus HOM05D000097 ORTHO05D000041 1.9e-16 89.0 45 93.3
MBI02_g21861_MAGBIO Magnolia biondii HOM05D006758 ORTHO05D008326 1.9e-16 89.0 44 95.5
FAN25G0357 Fragaria x ananassa HOM05D006758 ORTHO05D008326 3.2e-16 88.2 45 93.3
vmacro15829 Vaccinium macrocarpon HOM05D006758 ORTHO05D008326 4.2e-16 87.8 44 95.5
FAN21G3907 Fragaria x ananassa HOM05D006758 ORTHO05D008326 5.5e-16 87.4 53 83.0
HPP92_000849 Vanilla planifolia HOM05D006758 ORTHO05D008326 7.2e-16 87.0 43 95.3
Cre16.g689376 Chlamydomonas reinhardtii HOM05D006758 ORTHO05D008326 9.4e-16 86.7 77 51.9
SalBow1G3298 Salvia bowleyana HOM05D006758 ORTHO05D008326 1.6e-15 85.9 45 91.1
Gohir.D06G213300 Gossypium hirsutum HOM05D006758 ORTHO05D008326 3.4e-13 78.2 40 87.5
Atru.BG.309.p Acer truncatum HOM05D006758 ORTHO05D008326 3.7e-12 74.7 39 92.3
PGSC0003DMG400002083 Solanum tuberosum HOM05D006758 ORTHO05D008326 1.7e-09 65.9 32 90.6
A01p30660 Brassica napus HOM05D006758 ORTHO05D008326 1.2e-07 59.7 26 88.5
A01p30680 Brassica napus HOM05D006758 ORTHO05D008326 4.7e-07 57.8 26 84.6
BraA01t03197Z Brassica rapa HOM05D006758 ORTHO05D008326 4.7e-07 57.8 26 84.6


User provided reference genes

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