Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016182 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D000431 5.0e-82 307.8 160 100.0
CSS0030238 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D043314 5.0e-82 307.8 160 100.0
Thecc.08G100700 Theobroma cacao HOM05D000086 ORTHO05D000431 4.3e-25 118.6 175 46.9
CSS0001119 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D000431 2.8e-24 115.9 153 50.3
Manes.02G148600 Manihot esculenta HOM05D000086 ORTHO05D000431 4.5e-22 108.6 171 44.4
Duzib041G0657 Durio zibethinus HOM05D000086 ORTHO05D000431 6.4e-21 104.8 175 41.7
TAR625G0609 Trochodendron aralioides HOM05D000086 ORTHO05D000431 1.9e-20 103.2 179 43.0
TAR628G0774 Trochodendron aralioides HOM05D000086 ORTHO05D000431 3.0e-18 95.9 177 45.2
Duzib093G1162 Durio zibethinus HOM05D000086 ORTHO05D000431 6.7e-18 94.7 175 40.6
Dinv09001 Davidia involucrata HOM05D000113 ORTHO05D005496 3.7e-16 89.0 123 44.7
Ciclev10001098m.g Citrus clementina HOM05D000086 ORTHO05D000431 6.2e-16 88.2 178 43.8
Sabra02G0079800 Salix brachista HOM05D000086 ORTHO05D000431 2.4e-15 86.3 167 40.1
TAR381G1377 Trochodendron aralioides HOM05D000086 ORTHO05D000431 3.1e-15 85.9 183 40.4
Nn1g05473 Nelumbo nucifera HOM05D000086 ORTHO05D000431 2.6e-14 82.8 116 50.0
Hma1.2p1_0784F.1_g217310 Hydrangea macrophylla HOM05D000086 ORTHO05D000431 1.7e-13 80.1 151 39.7
Nn5g29979 Nelumbo nucifera HOM05D000086 ORTHO05D000431 1.7e-13 80.1 185 34.6
Potri.002G101800 Populus trichocarpa HOM05D000086 ORTHO05D000431 1.7e-13 80.1 175 38.3
Prupe.6G194300 Prunus persica HOM05D000086 ORTHO05D000431 4.2e-12 75.5 176 36.4
PSO675G5884 Papaver somniferum HOM05D000086 ORTHO05D000431 9.3e-12 74.3 173 41.0
COL.COLO4_11991 Corchorus olitorius HOM05D000086 ORTHO05D000431 3.5e-11 72.4 163 41.1
Cpa.g.sc36.190 Carica papaya HOM05D000086 ORTHO05D000431 4.6e-11 72.0 173 34.7
FAN26G2743 Fragaria x ananassa HOM05D000086 ORTHO05D000431 6.1e-11 71.6 127 41.7
Nitab4.5_0003374g0060 Nicotiana tabacum HOM05D000086 ORTHO05D000431 6.1e-11 71.6 163 39.3
Manes.07G037700 Manihot esculenta HOM05D000086 ORTHO05D000431 1.0e-10 70.9 139 39.6
RcHm_v2.0_Chr2g0112241 Rosa chinensis HOM05D000086 ORTHO05D000431 1.0e-10 70.9 144 38.2
Hma1.2p1_0522F.1_g171890 Hydrangea macrophylla HOM05D000086 ORTHO05D000431 2.3e-10 69.7 106 41.5
Nitab4.5_0013885g0010 Nicotiana tabacum HOM05D000086 ORTHO05D043314 3.0e-10 69.3 154 36.4
FAN19G0666 Fragaria x ananassa HOM05D000086 ORTHO05D000431 3.9e-10 68.9 127 40.9
FvH4_1g20164 Fragaria vesca HOM05D000086 ORTHO05D000431 5.1e-10 68.6 127 40.9
Lj4P279T8 Lonicera japonica HOM05D000086 ORTHO05D000431 5.1e-10 68.6 166 35.5
MD01G1036900 Malus domestica HOM05D000086 ORTHO05D000431 6.7e-10 68.2 154 38.3
TAR376G0764 Trochodendron aralioides HOM05D000086 ORTHO05D000431 8.7e-10 67.8 163 36.2
Gorai.009G233100 Gossypium raimondii HOM05D000086 ORTHO05D000431 1.9e-09 66.6 147 39.5
Cc10_g06590 Coffea canephora HOM05D000086 ORTHO05D000431 2.5e-09 66.2 170 39.4
Gohir.D05G225600 Gossypium hirsutum HOM05D000086 ORTHO05D000431 2.5e-09 66.2 147 39.5
Actinidia24011 Actinidia chinensis HOM05D000086 ORTHO05D000431 7.4e-09 64.7 140 36.4
FAN28G1256 Fragaria x ananassa HOM05D000086 ORTHO05D000431 7.4e-09 64.7 175 34.9
QL06p047938 Quercus lobata HOM05D000086 ORTHO05D000431 7.4e-09 64.7 115 45.2
CiPaw.06G156200 Carya illinoinensis HOM05D000086 ORTHO05D000431 2.8e-08 62.8 158 35.4
Haze_24826 Corylus avellana HOM05D000086 ORTHO05D000431 2.8e-08 62.8 174 35.6
Cfa018076 Carpinus fangiana HOM05D000086 ORTHO05D000431 3.7e-08 62.4 116 41.4
Haze_24831 Corylus avellana HOM05D000086 ORTHO05D000431 3.7e-08 62.4 174 35.1
Cfa002589 Carpinus fangiana HOM05D000086 ORTHO05D000431 4.8e-08 62.0 174 35.1
Nitab4.5_0000241g0150 Nicotiana tabacum HOM05D000086 ORTHO05D000431 6.3e-08 61.6 157 37.6
Actinidia26571 Actinidia chinensis HOM05D000086 ORTHO05D000431 1.4e-07 60.5 136 36.0
Cc02_g21130 Coffea canephora HOM05D000086 ORTHO05D000431 1.4e-07 60.5 104 40.4
Dinv42665 Davidia involucrata HOM05D000086 ORTHO05D000431 1.8e-07 60.1 89 47.2
MBI06_g03313_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D000431 1.8e-07 60.1 109 43.1
Prupe.8G066400 Prunus persica HOM05D000086 ORTHO05D000431 5.3e-07 58.5 146 37.0
CANSAT01G0420 Cannabis sativa HOM05D000086 ORTHO05D000431 6.9e-07 58.2 109 42.2
Rhsim10G0169000 Rhododendron simsii HOM05D000086 ORTHO05D000431 9.0e-07 57.8 111 39.6
MSTRG.15706 Avicennia marina HOM05D000086 ORTHO05D000431 1.5e-06 57.0 105 39.0
CiPaw.05G032000 Carya illinoinensis HOM05D000086 ORTHO05D000431 1.5e-06 57.0 158 34.8
Peaxi162Scf00139g00031 Petunia axillaris HOM05D000086 ORTHO05D000431 1.5e-06 57.0 169 34.3
Dinv44812 Davidia involucrata HOM05D000086 ORTHO05D000431 2.0e-06 56.6 98 45.9
CSS0014726 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D000431 2.6e-06 56.2 105 38.1
Gorai.008G091200 Gossypium raimondii HOM05D000086 ORTHO05D000431 2.6e-06 56.2 143 37.8
Cfa017903 Carpinus fangiana HOM05D000086 ORTHO05D000431 3.4e-06 55.8 80 51.2
Gohir.A05G222900 Gossypium hirsutum HOM05D000086 ORTHO05D000431 3.4e-06 55.8 146 37.0
Potri.007G111900 Populus trichocarpa HOM05D000086 ORTHO05D000431 3.4e-06 55.8 145 37.9
Aqoxy6G00699 Aquilegia oxysepala HOM05D000086 ORTHO05D000431 4.5e-06 55.5 175 33.1
CiPaw.03G146500 Carya illinoinensis HOM05D000086 ORTHO05D000431 5.9e-06 55.1 117 37.6
Sc16g0000330 Simmondsia chinensis HOM05D000086 ORTHO05D000431 5.9e-06 55.1 105 38.1
Sabra17G0036500 Salix brachista HOM05D000086 ORTHO05D000431 7.7e-06 54.7 164 34.1
Gohir.D12G081900 Gossypium hirsutum HOM05D000086 ORTHO05D000431 1.0e-05 54.3 143 37.1


User provided reference genes

Program Settings