Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 7.8e-92 340.5 179 100.0
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.8e-51 206.5 218 55.0
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.4e-45 186.8 207 55.1
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 7.4e-42 174.5 203 55.2
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 4.5e-39 165.2 212 50.5
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 7.7e-39 164.5 178 58.4
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 7.7e-39 164.5 213 50.2
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 6.1e-36 154.8 213 48.4
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.0e-35 154.1 212 46.7
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 6.7e-35 151.4 209 45.9
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.1e-34 150.6 227 42.7
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 7.4e-34 147.9 215 43.3
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.3e-33 147.1 206 47.1
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.3e-33 147.1 209 46.9
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 2.8e-33 146.0 211 44.1
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 5.3e-32 141.7 212 45.8
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.5e-31 140.2 214 44.4
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.5e-31 140.2 214 44.4
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 4.5e-31 138.7 223 42.2
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 1.3e-30 137.1 217 42.4
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 1.3e-30 137.1 232 42.7
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 2.9e-30 136.0 209 44.0
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.1e-29 134.0 214 41.1
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 5.5e-29 131.7 213 39.9
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 1.2e-28 130.6 141 55.3
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 1.6e-28 130.2 203 40.4
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.6e-28 130.2 215 40.0
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 3.6e-28 129.0 202 44.1
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 6.1e-28 128.3 212 42.9
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 8.0e-28 127.9 212 44.3
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 1.0e-27 127.5 212 43.4
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 8.8e-27 124.4 200 41.5
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.5e-26 123.6 213 41.3
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 2.2e-25 119.8 211 40.3
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 3.7e-25 119.0 212 37.7
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 3.7e-25 119.0 275 36.0
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 4.1e-24 115.5 73 80.8
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 4.1e-24 115.5 191 38.2
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 7.0e-24 114.8 213 38.5
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 7.0e-24 114.8 74 77.0
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 9.1e-24 114.4 188 42.0
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 9.1e-24 114.4 198 38.9
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.2e-23 114.0 72 79.2
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 1.6e-23 113.6 202 38.6
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.6e-23 112.8 204 37.7
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 3.5e-23 112.5 157 49.0
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 5.9e-23 111.7 213 35.7
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 5.9e-23 111.7 188 43.1
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 1.0e-22 110.9 204 37.3
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 2.9e-22 109.4 220 37.7
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 6.5e-22 108.2 204 36.8
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 2.5e-21 106.3 220 36.4
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.2e-21 105.9 141 45.4
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 3.2e-21 105.9 195 39.0
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 4.2e-21 105.5 73 72.6
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 5.5e-21 105.1 72 72.2
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 7.2e-21 104.8 192 37.5
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 9.4e-21 104.4 196 38.3
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 1.2e-20 104.0 196 37.8
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 1.2e-20 104.0 201 38.8
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 1.6e-20 103.6 114 51.8
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 1.6e-20 103.6 232 34.1
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 2.1e-20 103.2 74 67.6
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 1.4e-19 100.5 197 36.5
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.3e-19 99.8 74 67.6
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 4.0e-19 99.0 223 34.5
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 4.0e-19 99.0 157 40.8
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.2e-19 98.6 190 41.1
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 6.8e-19 98.2 71 64.8
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 8.8e-19 97.8 195 35.9
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 1.2e-18 97.4 157 40.1
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 1.5e-18 97.1 72 66.7
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 7.5e-18 94.7 71 62.0
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 1.3e-17 94.0 125 46.4
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 7.0e-16 88.2 155 36.8
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 7.7e-15 84.7 70 57.1
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 1.7e-14 83.6 113 46.9
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.5e-13 80.5 71 56.3
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 6.8e-11 71.6 135 41.5
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.5e-10 70.5 73 43.8
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 4.4e-10 68.9 72 44.4
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 4.4e-10 68.9 72 38.9
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 9.8e-10 67.8 72 45.8
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 2.2e-09 66.6 80 35.0
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 2.8e-09 66.2 73 43.8
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 8.3e-09 64.7 72 38.9
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 8.3e-09 64.7 74 41.9
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 8.3e-09 64.7 74 43.2
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 1.1e-08 64.3 74 41.9
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 1.1e-08 64.3 74 40.5
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.1e-08 64.3 74 41.9
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.4e-08 63.9 97 35.1
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 1.4e-08 63.9 74 39.2
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 1.4e-08 63.9 71 43.7
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.8e-08 63.5 73 39.7
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.4e-08 63.2 104 42.3
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 2.4e-08 63.2 74 41.9
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 3.1e-08 62.8 74 39.2
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 3.1e-08 62.8 72 40.3
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 4.1e-08 62.4 73 41.1
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 7.0e-08 61.6 75 41.3
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 9.1e-08 61.2 74 37.8
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 9.1e-08 61.2 80 37.5
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 9.1e-08 61.2 75 41.3
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 9.1e-08 61.2 74 37.8
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 9.1e-08 61.2 73 38.4
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.2e-07 60.8 73 39.7
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 1.2e-07 60.8 73 38.4
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 1.6e-07 60.5 71 42.3
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.6e-07 60.5 72 37.5
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.6e-07 60.5 74 37.8
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 2.0e-07 60.1 71 42.3
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 2.7e-07 59.7 75 40.0
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 2.7e-07 59.7 71 40.8
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 2.7e-07 59.7 75 41.3
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 3.5e-07 59.3 72 40.3
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 3.5e-07 59.3 74 39.2
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 3.5e-07 59.3 74 39.2
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 4.5e-07 58.9 71 36.6
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 5.9e-07 58.5 74 41.9
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 5.9e-07 58.5 73 39.7
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 7.7e-07 58.2 74 36.5
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 7.7e-07 58.2 77 36.4
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.0e-06 57.8 74 36.5
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 1.0e-06 57.8 74 36.5
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.3e-06 57.4 72 34.7
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 1.7e-06 57.0 75 36.0
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.7e-06 57.0 71 38.0
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.7e-06 57.0 74 36.5
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 2.3e-06 56.6 83 41.0
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 2.3e-06 56.6 81 40.7
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 2.3e-06 56.6 75 38.7
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 2.3e-06 56.6 80 40.0
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 2.3e-06 56.6 74 43.2
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 2.3e-06 56.6 71 39.4
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.9e-06 56.2 94 43.6
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 5.0e-06 55.5 71 39.4
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 8.6e-06 54.7 94 42.6


User provided reference genes

Program Settings