Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.6e-91 339.3 161 100.0
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.9e-89 332.4 161 98.8
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 2.0e-54 216.1 161 63.4
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 3.4e-54 215.3 157 67.5
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 3.7e-48 195.3 162 61.7
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 9.3e-44 180.6 136 63.2
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 3.0e-42 175.6 139 59.0
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 2.8e-40 169.1 139 61.2
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 5.3e-39 164.9 145 53.8
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 6.9e-39 164.5 137 56.2
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 1.7e-37 159.8 136 54.4
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 3.8e-37 158.7 134 56.0
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 3.8e-37 158.7 134 57.5
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 6.5e-37 157.9 137 54.0
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 6.5e-37 157.9 134 57.5
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 7.1e-36 154.5 146 50.0
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 2.7e-35 152.5 150 53.3
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 1.0e-34 150.6 134 53.0
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.0e-34 150.6 135 48.9
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.0e-34 149.1 130 50.0
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.9e-34 148.7 136 48.5
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 5.1e-34 148.3 145 46.2
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 5.1e-34 148.3 130 50.0
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 1.9e-33 146.4 130 49.2
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 5.7e-33 144.8 149 51.0
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 7.4e-33 144.4 129 51.9
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 9.7e-33 144.1 139 49.6
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 9.7e-33 144.1 134 50.0
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 1.6e-32 143.3 136 52.9
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 1.6e-32 143.3 129 52.7
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 3.7e-32 142.1 136 50.0
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.1e-31 140.6 135 48.1
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 1.8e-31 139.8 128 47.7
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.8e-31 139.8 128 47.7
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 2.4e-31 139.4 136 52.2
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 2.4e-31 139.4 130 49.2
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 4.1e-31 138.7 136 51.5
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 6.9e-31 137.9 164 45.7
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 1.2e-30 137.1 157 44.6
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 2.0e-30 136.3 161 46.6
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 3.4e-30 135.6 147 44.2
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 3.4e-30 135.6 147 44.2
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 7.6e-30 134.4 141 47.5
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 1.0e-29 134.0 144 49.3
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 1.3e-29 133.7 160 43.8
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 1.7e-29 133.3 160 45.0
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.9e-29 132.5 166 41.0
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 2.9e-29 132.5 142 48.6
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 2.9e-29 132.5 140 47.1
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 6.5e-29 131.3 138 47.8
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 1.1e-28 130.6 162 46.9
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 2.5e-28 129.4 145 43.4
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.2e-28 129.0 160 46.2
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 3.2e-28 129.0 132 48.5
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 3.2e-28 129.0 135 43.7
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 4.2e-28 128.6 146 46.6
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 4.2e-28 128.6 130 46.9
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 4.2e-28 128.6 130 49.2
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 4.2e-28 128.6 143 44.1
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 4.2e-28 128.6 140 50.0
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 5.5e-28 128.3 134 45.5
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 7.2e-28 127.9 131 52.7
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 9.3e-28 127.5 160 40.6
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 1.2e-27 127.1 131 45.0
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 3.6e-27 125.6 132 48.5
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 4.6e-27 125.2 133 46.6
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 6.1e-27 124.8 128 46.9
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 1.8e-26 123.2 160 40.0
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 3.9e-26 122.1 140 45.7
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 8.8e-26 120.9 142 40.8
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 8.8e-26 120.9 142 43.0
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.1e-25 120.6 135 47.4
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 2.5e-25 119.4 125 44.8
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 3.3e-25 119.0 121 47.1
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 4.3e-25 118.6 142 43.7
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 9.7e-25 117.5 139 44.6
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 2.2e-24 116.3 139 40.3
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 2.2e-24 116.3 160 36.9
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 2.8e-24 115.9 137 43.1
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 4.8e-24 115.2 140 44.3
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 4.8e-24 115.2 140 44.3
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.1e-23 114.0 137 42.3
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.1e-23 114.0 140 43.6
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.1e-23 114.0 140 43.6
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 1.4e-23 113.6 127 43.3
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 1.8e-23 113.2 136 45.6
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 3.1e-23 112.5 141 41.8
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 5.3e-23 111.7 109 50.5
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 9.1e-23 110.9 142 43.7
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 9.1e-23 110.9 108 46.3
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 1.2e-22 110.5 126 46.0
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 2.6e-22 109.4 141 44.7
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 5.9e-22 108.2 148 38.5
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 5.9e-22 108.2 126 42.1
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 7.7e-22 107.8 149 41.6
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 2.2e-21 106.3 165 36.4
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 2.9e-21 105.9 164 36.0
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 3.8e-21 105.5 118 43.2
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.0e-21 105.1 142 42.3
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 5.0e-21 105.1 129 40.3
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 8.5e-21 104.4 111 44.1
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 1.1e-20 104.0 120 45.0
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 1.9e-20 103.2 118 43.2
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 4.2e-20 102.1 102 48.0
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 7.2e-20 101.3 100 43.0
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.2e-19 100.5 149 38.9
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.6e-19 100.1 92 45.7
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.6e-19 100.1 137 40.1
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.6e-19 100.1 137 40.1
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 2.1e-19 99.8 118 42.4
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 3.6e-19 99.0 161 38.5
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 1.4e-18 97.1 104 44.2
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 7.4e-17 91.3 172 33.7
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 9.7e-17 90.9 147 34.0
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 9.7e-17 90.9 172 33.7
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.3e-16 90.5 94 44.7
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 3.7e-16 89.0 131 36.6
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 3.7e-16 89.0 108 38.9
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 4.8e-16 88.6 102 45.1
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 1.4e-15 87.0 126 36.5
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 1.8e-15 86.7 75 48.0
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 1.8e-15 86.7 132 36.4
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 3.1e-15 85.9 113 41.6
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 3.1e-15 85.9 132 34.1
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 4.1e-15 85.5 113 41.6
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.9e-15 84.7 105 39.0
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 9.1e-15 84.3 91 42.9
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 5.9e-14 81.6 125 38.4
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.0e-13 80.9 91 48.4
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.2e-13 79.7 103 41.7
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 5.0e-13 78.6 95 45.3
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 1.9e-12 76.6 122 31.1
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.1e-11 73.2 77 42.9
FvH4_7g07710 Fragaria vesca HOM05D000462 ORTHO05D005846 6.7e-10 68.2 117 34.2
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 1.1e-09 67.4 105 31.4
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 4.4e-09 65.5 75 40.0
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 2.2e-08 63.2 90 35.6
Aqoxy5G02385 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 4.8e-08 62.0 122 30.3
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 8.2e-08 61.2 114 31.6
PSO063G3506 Papaver somniferum HOM05D000823 ORTHO05D000088 1.1e-07 60.8 122 30.3
SalBow6G3582 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.8e-07 60.1 115 29.6
PSO170G5993 Papaver somniferum HOM05D000823 ORTHO05D000088 4.1e-07 58.9 129 31.0
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 9.1e-07 57.8 58 50.0
Duzib264G0510 Durio zibethinus HOM05D000395 ORTHO05D000088 1.2e-06 57.4 119 31.9
SGA_v2.0_scaffold15G07218 Striga asiatica HOM05D000395 ORTHO05D000088 1.2e-06 57.4 85 31.8
DCAR_003838 Daucus carota HOM05D000395 ORTHO05D000088 1.6e-06 57.0 109 32.1
AUR62020516 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.6e-06 56.2 69 43.5
Nitab4.5_0006031g0060 Nicotiana tabacum HOM05D010896 ORTHO05D011162 2.6e-06 56.2 81 37.0
Eucgr.I01210 Eucalyptus grandis HOM05D000395 ORTHO05D000088 3.5e-06 55.8 129 30.2
PSO017G0811 Papaver somniferum HOM05D000823 ORTHO05D000088 3.5e-06 55.8 128 30.5
PSO017G5313 Papaver somniferum HOM05D000823 ORTHO05D000088 3.5e-06 55.8 122 28.7
SGA_v2.0_scaffold15G07217 Striga asiatica HOM05D000395 ORTHO05D000088 4.5e-06 55.5 85 30.6
Nitab4.5_0002937g0010 Nicotiana tabacum HOM05D010896 ORTHO05D011162 7.7e-06 54.7 105 33.3


User provided reference genes

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